Wall clock time and date at job start Wed Apr 1 2020 01:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.36930 * 119.99841 * 275.00145 * 4 2 1 6 6 H 1.07999 * 120.00622 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99916 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00468 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99959 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47451 * 89.99447 * 9 7 5 11 11 H 1.48497 * 109.47471 * 210.00073 * 9 7 5 12 12 H 1.48503 * 109.47044 * 329.99876 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 C 1.53043 * 109.45734 * 180.02562 * 13 2 1 15 15 C 1.53201 * 109.30639 * 178.59803 * 14 13 2 16 16 N 1.46919 * 108.76708 * 54.65698 * 15 14 13 17 17 C 1.34779 * 120.63100 * 126.40150 * 16 15 14 18 18 O 1.21280 * 119.99856 * 179.97438 * 17 16 15 19 19 C 1.50692 * 120.00133 * 359.97438 * 17 16 15 20 20 C 1.52995 * 109.47467 * 180.02562 * 19 17 16 21 21 C 1.50696 * 109.47718 * 179.97438 * 20 19 17 22 22 C 1.35352 * 126.74989 * 124.70450 * 21 20 19 23 23 N 1.35316 * 106.17378 * 179.85743 * 22 21 20 24 24 C 1.46498 * 125.87241 * 180.12092 * 23 22 21 25 25 N 1.28723 * 108.26448 * 0.42171 * 23 22 21 26 26 N 1.28635 * 110.17194 * 359.73603 * 25 23 22 27 27 C 1.46927 * 118.73892 * 306.38616 * 16 15 14 28 28 C 1.53039 * 109.46170 * 59.96860 * 13 2 1 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 33 33 H 0.96993 * 120.00314 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.45834 * 299.99563 * 13 2 1 35 35 H 1.08998 * 109.49864 * 298.56065 * 14 13 2 36 36 H 1.08999 * 109.49867 * 58.66708 * 14 13 2 37 37 H 1.08998 * 109.59853 * 294.86718 * 15 14 13 38 38 H 1.09000 * 109.69631 * 174.50268 * 15 14 13 39 39 H 1.09000 * 109.47070 * 299.99738 * 19 17 16 40 40 H 1.08999 * 109.47140 * 59.99383 * 19 17 16 41 41 H 1.09002 * 109.47185 * 300.00487 * 20 19 17 42 42 H 1.09004 * 109.47057 * 59.99691 * 20 19 17 43 43 H 1.08001 * 126.91519 * 0.02562 * 22 21 20 44 44 H 1.09006 * 109.47074 * 270.33550 * 24 23 22 45 45 H 1.09004 * 109.46994 * 30.32181 * 24 23 22 46 46 H 1.08991 * 109.47819 * 150.32701 * 24 23 22 47 47 H 1.09010 * 109.58200 * 293.81608 * 27 16 15 48 48 H 1.08996 * 109.70864 * 173.46625 * 27 16 15 49 49 H 1.08997 * 109.50134 * 301.34035 * 28 13 2 50 50 H 1.09003 * 109.49162 * 61.43719 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3756 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6620 3.5092 8 7 2.7377 -0.0054 4.6429 9 14 3.0558 -2.4745 3.4252 10 1 4.4886 -2.6166 3.0618 11 1 2.8158 -3.1049 4.7482 12 1 2.2162 -3.1430 2.3988 13 6 2.0400 -0.7212 -1.2494 14 6 3.5704 -0.7215 -1.2487 15 6 4.0773 -1.4747 -2.4828 16 7 3.4748 -0.8768 -3.6819 17 6 4.2483 -0.4580 -4.7031 18 8 3.7387 0.0335 -5.6878 19 6 5.7462 -0.6004 -4.6213 20 6 6.3813 -0.0517 -5.9005 21 6 7.8794 -0.1935 -5.8185 22 6 8.6833 -0.8217 -6.7080 23 7 9.9435 -0.6961 -6.2314 24 6 11.1567 -1.2199 -6.8638 25 7 9.8925 -0.0428 -5.1234 26 7 8.6755 0.2714 -4.8493 27 6 2.0129 -0.7445 -3.7470 28 6 1.5291 0.0001 -2.4987 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 2.2491 -1.6318 1.1525 33 1 3.0611 -0.4627 5.4348 34 1 1.6766 -1.7488 -1.2492 35 1 3.9345 0.3055 -1.2741 36 1 3.9337 -1.2147 -0.3471 37 1 3.7903 -2.5240 -2.4141 38 1 5.1628 -1.3957 -2.5412 39 1 6.1180 -0.0411 -3.7628 40 1 6.0055 -1.6531 -4.5090 41 1 6.0096 -0.6106 -6.7594 42 1 6.1220 1.0011 -6.0123 43 1 8.3803 -1.3203 -7.6169 44 1 11.3453 -2.2319 -6.5054 45 1 11.0242 -1.2365 -7.9456 46 1 12.0029 -0.5812 -6.6111 47 1 1.5576 -1.7343 -3.7814 48 1 1.7340 -0.1828 -4.6385 49 1 0.4394 0.0207 -2.4869 50 1 1.9127 1.0203 -2.5121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753283790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:36 Heat of formation + Delta-G solvation = 67.117891 kcal Electronic energy + Delta-G solvation = -28892.740845 eV Core-core repulsion = 24957.323407 eV Total energy + Delta-G solvation = -3935.417438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -43.56499 -40.27273 -38.08405 -35.61857 -35.41425 -33.81493 -32.90049 -31.40663 -30.88844 -30.31090 -28.77022 -28.27494 -25.88893 -24.93425 -23.35627 -22.69684 -22.42865 -21.44859 -20.73972 -19.81360 -18.88748 -17.81015 -17.50484 -17.00938 -16.88750 -15.89901 -15.85083 -15.16776 -14.87154 -14.44957 -14.33081 -14.16762 -13.98011 -13.82665 -13.66568 -13.36377 -13.23998 -13.01051 -12.79476 -12.50084 -12.41717 -12.33715 -12.18410 -11.86869 -11.67052 -11.54643 -11.34654 -11.08688 -10.96240 -10.91429 -10.78212 -10.40824 -10.37011 -10.29447 -10.07937 -9.88497 -9.72944 -9.54286 -9.44236 -8.90745 -8.60365 -7.23142 -5.73913 -3.08736 1.24025 1.98623 2.21676 2.59990 2.99047 3.37849 3.39754 3.46172 3.90793 4.15538 4.34316 4.43832 4.60813 4.61883 4.69606 4.73315 4.81765 4.91470 4.97810 5.01754 5.07670 5.19021 5.28848 5.31964 5.39141 5.48614 5.52411 5.62718 5.67993 5.72478 5.80980 5.82723 5.87622 5.95035 5.98433 6.04862 6.17330 6.18353 6.23868 6.37553 6.39939 6.47514 6.57787 6.67200 6.88592 7.07082 7.38573 8.03296 8.13455 8.20257 8.45407 9.24271 9.96759 10.17054 11.44755 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.002478 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.294173 B =11295.972116 C =12986.966891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.182 3.818 3 H 0.054 0.946 4 N -0.747 5.747 5 C -0.238 4.238 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.882 3.118 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.278 1.278 13 C -0.093 4.093 14 C -0.125 4.125 15 C 0.103 3.897 16 N -0.608 5.608 17 C 0.517 3.483 18 O -0.551 6.551 19 C -0.135 4.135 20 C -0.015 4.015 21 C -0.017 4.017 22 C -0.050 4.050 23 N -0.297 5.297 24 C 0.081 3.919 25 N -0.085 5.085 26 N -0.261 5.261 27 C 0.112 3.888 28 C -0.127 4.127 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.359 0.641 33 H 0.258 0.742 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.191 0.809 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.089 0.911 49 H 0.078 0.922 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.243 -6.027 -28.038 30.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.073 3.927 3 H 0.072 0.928 4 N -0.390 5.390 5 C -0.368 4.368 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.584 5.584 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.113 4.113 14 C -0.163 4.163 15 C -0.019 4.019 16 N -0.341 5.341 17 C 0.306 3.694 18 O -0.429 6.429 19 C -0.175 4.175 20 C -0.054 4.054 21 C -0.155 4.155 22 C -0.201 4.201 23 N -0.091 5.091 24 C -0.060 4.060 25 N -0.065 5.065 26 N -0.128 5.128 27 C -0.010 4.010 28 C -0.166 4.166 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.192 0.808 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.208 0.792 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.082 0.918 48 H 0.108 0.892 49 H 0.097 0.903 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.850 -5.019 -27.204 30.095 hybrid contribution -0.085 -1.979 -0.650 2.084 sum 11.766 -6.998 -27.854 31.037 Atomic orbital electron populations 1.22463 0.99060 1.00721 1.00393 1.20195 0.91756 0.95673 0.85053 0.92777 1.42780 1.79786 1.09241 1.07174 1.19066 1.36510 0.95451 0.85732 0.89309 1.24667 1.01696 0.97348 0.95598 1.69697 1.52881 1.35508 1.00279 0.86579 0.78400 0.86970 0.76753 1.21097 1.21915 1.20386 1.21425 0.94991 0.99852 0.94990 1.21908 0.96022 1.01495 0.96906 1.21906 0.98320 0.97153 0.84533 1.48168 1.07208 1.60979 1.17753 1.20605 0.89308 0.77202 0.82285 1.90667 1.75574 1.45036 1.31663 1.21621 0.91652 1.03634 1.00585 1.19598 0.84566 1.03535 0.97749 1.22061 0.98030 1.01846 0.93543 1.23409 0.83993 1.08438 1.04231 1.47264 1.08353 1.36780 1.16666 1.22265 0.84030 1.01082 0.98609 1.78360 1.16317 1.11416 1.00392 1.75096 0.95520 1.19078 1.23111 1.21616 0.79204 1.00631 0.99565 1.22002 1.01203 0.99791 0.93607 0.92559 0.93757 0.93961 0.80800 0.93145 0.91550 0.91280 0.89638 0.91421 0.89754 0.87800 0.89040 0.89412 0.89194 0.79234 0.89038 0.88314 0.88001 0.91812 0.89240 0.90315 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.14 37.16 0.34 -2.50 16 2 C 0.18 3.34 2.47 -67.93 -0.17 3.17 16 3 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 4 N -0.75 -16.91 4.21 -53.43 -0.22 -17.14 16 5 C -0.24 -6.56 10.41 -15.06 -0.16 -6.72 16 6 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 7 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 8 N -0.94 -29.35 13.97 55.49 0.78 -28.57 16 9 Si 0.88 21.82 27.74 -169.99 -4.71 17.11 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 13 C -0.09 -1.35 1.79 -90.57 -0.16 -1.51 16 14 C -0.13 -1.77 5.22 -26.61 -0.14 -1.91 16 15 C 0.10 1.17 6.34 -3.71 -0.02 1.14 16 16 N -0.61 -7.27 2.97 -172.77 -0.51 -7.78 16 17 C 0.52 6.42 7.70 -10.99 -0.08 6.34 16 18 O -0.55 -8.34 15.40 5.56 0.09 -8.25 16 19 C -0.13 -1.34 4.02 -27.89 -0.11 -1.46 16 20 C -0.01 -0.14 5.08 -27.89 -0.14 -0.28 16 21 C -0.02 -0.17 6.50 -82.78 -0.54 -0.71 16 22 C -0.05 -0.36 11.54 -17.04 -0.20 -0.56 16 23 N -0.30 -2.28 3.74 -68.06 -0.25 -2.54 16 24 C 0.08 0.19 11.39 59.85 0.68 0.87 16 25 N -0.09 -1.01 13.17 60.35 0.79 -0.21 16 26 N -0.26 -3.38 12.40 33.29 0.41 -2.97 16 27 C 0.11 1.31 6.43 -3.71 -0.02 1.29 16 28 C -0.13 -1.58 5.04 -26.62 -0.13 -1.71 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.60 6.40 -51.93 -0.33 0.26 16 32 H 0.36 7.99 5.44 -40.82 -0.22 7.77 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.36 7.41 -51.93 -0.38 0.98 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.84 5.93 -51.93 -0.31 0.53 16 39 H 0.10 1.11 7.70 -51.93 -0.40 0.71 16 40 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16 41 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 42 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 43 H 0.19 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 45 H 0.10 -0.03 8.14 -51.93 -0.42 -0.46 16 46 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 47 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 48 H 0.09 1.11 7.01 -51.93 -0.36 0.74 16 49 H 0.08 0.90 6.36 -51.93 -0.33 0.57 16 50 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 397.20 15.07 5.99 5.99 Total: -1.00 -36.35 397.20 -6.86 -43.22 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -8.25 Total: 5.70 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.96 Total: -4.56 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.99 Total: -59.21 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.35 -6.86 -43.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753283790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.336 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds