Wall clock time and date at job start Wed Apr 1 2020 01:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.36930 * 119.99841 * 275.00145 * 4 2 1 6 6 H 1.07999 * 120.00622 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99916 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00468 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99959 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47451 * 89.99447 * 9 7 5 11 11 H 1.48497 * 109.47471 * 210.00073 * 9 7 5 12 12 H 1.48503 * 109.47044 * 329.99876 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 14 14 C 1.53043 * 109.45734 * 180.02562 * 13 2 1 15 15 C 1.53201 * 109.30639 * 178.59803 * 14 13 2 16 16 N 1.46919 * 108.76708 * 54.65698 * 15 14 13 17 17 C 1.34779 * 120.63100 * 126.40150 * 16 15 14 18 18 O 1.21280 * 119.99856 * 179.97438 * 17 16 15 19 19 C 1.50692 * 120.00133 * 359.97438 * 17 16 15 20 20 C 1.52995 * 109.47467 * 180.02562 * 19 17 16 21 21 C 1.50696 * 109.47718 * 179.97438 * 20 19 17 22 22 C 1.35352 * 126.74989 * 124.70450 * 21 20 19 23 23 N 1.35316 * 106.17378 * 179.85743 * 22 21 20 24 24 C 1.46498 * 125.87241 * 180.12092 * 23 22 21 25 25 N 1.28723 * 108.26448 * 0.42171 * 23 22 21 26 26 N 1.28635 * 110.17194 * 359.73603 * 25 23 22 27 27 C 1.46927 * 118.73892 * 306.38616 * 16 15 14 28 28 C 1.53039 * 109.46170 * 59.96860 * 13 2 1 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 33 33 H 0.96993 * 120.00314 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.45834 * 299.99563 * 13 2 1 35 35 H 1.08998 * 109.49864 * 298.56065 * 14 13 2 36 36 H 1.08999 * 109.49867 * 58.66708 * 14 13 2 37 37 H 1.08998 * 109.59853 * 294.86718 * 15 14 13 38 38 H 1.09000 * 109.69631 * 174.50268 * 15 14 13 39 39 H 1.09000 * 109.47070 * 299.99738 * 19 17 16 40 40 H 1.08999 * 109.47140 * 59.99383 * 19 17 16 41 41 H 1.09002 * 109.47185 * 300.00487 * 20 19 17 42 42 H 1.09004 * 109.47057 * 59.99691 * 20 19 17 43 43 H 1.08001 * 126.91519 * 0.02562 * 22 21 20 44 44 H 1.09006 * 109.47074 * 270.33550 * 24 23 22 45 45 H 1.09004 * 109.46994 * 30.32181 * 24 23 22 46 46 H 1.08991 * 109.47819 * 150.32701 * 24 23 22 47 47 H 1.09010 * 109.58200 * 293.81608 * 27 16 15 48 48 H 1.08996 * 109.70864 * 173.46625 * 27 16 15 49 49 H 1.08997 * 109.50134 * 301.34035 * 28 13 2 50 50 H 1.09003 * 109.49162 * 61.43719 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3756 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6620 3.5092 8 7 2.7377 -0.0054 4.6429 9 14 3.0558 -2.4745 3.4252 10 1 4.4886 -2.6166 3.0618 11 1 2.8158 -3.1049 4.7482 12 1 2.2162 -3.1430 2.3988 13 6 2.0400 -0.7212 -1.2494 14 6 3.5704 -0.7215 -1.2487 15 6 4.0773 -1.4747 -2.4828 16 7 3.4748 -0.8768 -3.6819 17 6 4.2483 -0.4580 -4.7031 18 8 3.7387 0.0335 -5.6878 19 6 5.7462 -0.6004 -4.6213 20 6 6.3813 -0.0517 -5.9005 21 6 7.8794 -0.1935 -5.8185 22 6 8.6833 -0.8217 -6.7080 23 7 9.9435 -0.6961 -6.2314 24 6 11.1567 -1.2199 -6.8638 25 7 9.8925 -0.0428 -5.1234 26 7 8.6755 0.2714 -4.8493 27 6 2.0129 -0.7445 -3.7470 28 6 1.5291 0.0001 -2.4987 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 2.2491 -1.6318 1.1525 33 1 3.0611 -0.4627 5.4348 34 1 1.6766 -1.7488 -1.2492 35 1 3.9345 0.3055 -1.2741 36 1 3.9337 -1.2147 -0.3471 37 1 3.7903 -2.5240 -2.4141 38 1 5.1628 -1.3957 -2.5412 39 1 6.1180 -0.0411 -3.7628 40 1 6.0055 -1.6531 -4.5090 41 1 6.0096 -0.6106 -6.7594 42 1 6.1220 1.0011 -6.0123 43 1 8.3803 -1.3203 -7.6169 44 1 11.3453 -2.2319 -6.5054 45 1 11.0242 -1.2365 -7.9456 46 1 12.0029 -0.5812 -6.6111 47 1 1.5576 -1.7343 -3.7814 48 1 1.7340 -0.1828 -4.6385 49 1 0.4394 0.0207 -2.4869 50 1 1.9127 1.0203 -2.5121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753283790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:35 Heat of formation + Delta-G solvation = 42.057711 kcal Electronic energy + Delta-G solvation = -28893.827536 eV Core-core repulsion = 24957.323407 eV Total energy + Delta-G solvation = -3936.504129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.20186 -41.26963 -39.28854 -36.97447 -36.10302 -34.69157 -34.41868 -32.84916 -32.11346 -31.20219 -30.23072 -28.69692 -26.89163 -26.14798 -24.92334 -23.80989 -23.01234 -22.44285 -21.75921 -21.23126 -19.94955 -19.46642 -18.38556 -17.73854 -17.54893 -16.86984 -16.80182 -16.56904 -16.07101 -15.74533 -15.25553 -15.16091 -15.08415 -14.84322 -14.53166 -14.40667 -14.30845 -14.00296 -13.96886 -13.67669 -13.51866 -13.45957 -13.04992 -13.03485 -12.88883 -12.75812 -12.57478 -12.33474 -12.28448 -12.14700 -12.00757 -11.81556 -11.63172 -11.50251 -11.35639 -11.23396 -10.99394 -10.93348 -10.72600 -10.11829 -9.60344 -9.25243 -7.97977 -5.30085 0.66574 1.39168 1.43785 1.48498 1.50910 1.60347 1.64471 2.08714 2.52156 3.31929 3.33690 3.56555 3.60631 3.77710 3.81497 3.88565 4.05593 4.10765 4.16337 4.19445 4.22566 4.35078 4.39754 4.40567 4.46651 4.55647 4.60807 4.64160 4.66016 4.78250 4.78631 4.83670 4.90878 4.93564 5.01963 5.05165 5.10540 5.12696 5.15698 5.24526 5.26151 5.35000 5.49881 5.60015 5.68597 5.71213 5.82377 6.26326 6.43735 7.13476 7.18239 7.52469 7.90332 8.10509 9.24191 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.002478 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.294173 B =11295.972116 C =12986.966891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.031 0.969 4 N -0.746 5.746 5 C -0.220 4.220 6 H 0.049 0.951 7 C -0.071 4.071 8 N -0.989 5.989 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.302 1.302 12 H -0.247 1.247 13 C -0.082 4.082 14 C -0.125 4.125 15 C 0.111 3.889 16 N -0.609 5.609 17 C 0.516 3.484 18 O -0.580 6.580 19 C -0.127 4.127 20 C -0.007 4.007 21 C -0.039 4.039 22 C -0.029 4.029 23 N -0.289 5.289 24 C 0.069 3.931 25 N -0.128 5.128 26 N -0.307 5.307 27 C 0.114 3.886 28 C -0.119 4.119 29 H 0.025 0.975 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.366 0.634 33 H 0.255 0.745 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.235 0.765 44 H 0.107 0.893 45 H 0.133 0.867 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.587 -9.293 -31.538 34.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 H 0.049 0.951 4 N -0.390 5.390 5 C -0.352 4.352 6 H 0.067 0.933 7 C -0.261 4.261 8 N -0.641 5.641 9 Si 0.783 3.217 10 H -0.202 1.202 11 H -0.229 1.229 12 H -0.172 1.172 13 C -0.102 4.102 14 C -0.163 4.163 15 C -0.011 4.011 16 N -0.341 5.341 17 C 0.306 3.694 18 O -0.461 6.461 19 C -0.167 4.167 20 C -0.047 4.047 21 C -0.178 4.178 22 C -0.181 4.181 23 N -0.083 5.083 24 C -0.070 4.070 25 N -0.107 5.107 26 N -0.173 5.173 27 C -0.008 4.008 28 C -0.157 4.157 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.199 0.801 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.252 0.748 44 H 0.126 0.874 45 H 0.151 0.849 46 H 0.121 0.879 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.112 0.888 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.207 -8.286 -30.752 34.108 hybrid contribution -0.192 -0.849 0.346 0.937 sum 12.015 -9.136 -30.407 33.947 Atomic orbital electron populations 1.22338 0.97542 1.01384 1.00534 1.20424 0.92750 0.94763 0.85317 0.95091 1.42728 1.79987 1.09429 1.06817 1.18977 1.34508 0.94074 0.87608 0.93260 1.25527 1.02714 1.02753 0.95134 1.69901 1.55107 1.37792 1.01254 0.85394 0.78751 0.80605 0.76945 1.20243 1.22902 1.17158 1.21310 0.95101 1.00186 0.93556 1.21851 0.95901 1.00727 0.97836 1.21892 0.99075 0.97506 0.82653 1.48249 1.07442 1.60711 1.17746 1.20970 0.90150 0.76407 0.81860 1.90653 1.76244 1.46300 1.32866 1.21580 0.89845 1.04695 1.00586 1.19515 0.84547 1.02579 0.98025 1.22261 0.98281 1.03119 0.94173 1.24045 0.83165 1.06461 1.04404 1.47699 1.10003 1.35105 1.15511 1.22736 0.82287 1.01607 1.00354 1.78268 1.16104 1.13660 1.02630 1.75018 0.96482 1.20722 1.25108 1.21628 0.79179 1.01470 0.98526 1.21926 1.02043 0.98835 0.92946 0.95613 0.92734 0.90682 0.80072 0.93587 0.90025 0.93169 0.91339 0.89285 0.88430 0.88915 0.87053 0.87668 0.91135 0.74822 0.87446 0.84915 0.87879 0.89739 0.89836 0.88764 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 9.14 71.98 0.66 -4.53 16 2 C 0.18 6.33 2.47 44.99 0.11 6.44 16 3 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 4 N -0.75 -33.50 4.21 -322.94 -1.36 -34.85 16 5 C -0.22 -12.52 10.41 84.04 0.87 -11.64 16 6 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 7 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 8 N -0.99 -64.32 13.97 21.65 0.30 -64.01 16 9 Si 0.96 45.10 27.74 68.60 1.90 47.00 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 12 H -0.25 -10.30 6.52 99.48 0.65 -9.65 16 13 C -0.08 -2.21 1.79 -10.76 -0.02 -2.23 16 14 C -0.12 -3.37 5.22 30.68 0.16 -3.21 16 15 C 0.11 2.22 6.34 86.37 0.55 2.76 16 16 N -0.61 -13.18 2.97 -818.92 -2.43 -15.61 16 17 C 0.52 12.01 7.70 87.65 0.67 12.68 16 18 O -0.58 -16.86 15.40 -3.03 -0.05 -16.91 16 19 C -0.13 -2.36 4.02 29.84 0.12 -2.24 16 20 C -0.01 -0.13 5.08 29.85 0.15 0.03 16 21 C -0.04 -0.74 6.50 41.60 0.27 -0.47 16 22 C -0.03 -0.33 11.54 83.49 0.96 0.63 16 23 N -0.29 -3.88 3.74 -369.23 -1.38 -5.26 16 24 C 0.07 0.13 11.39 127.77 1.46 1.58 16 25 N -0.13 -2.98 13.17 37.02 0.49 -2.50 16 26 N -0.31 -8.03 12.40 -48.60 -0.60 -8.63 16 27 C 0.11 2.36 6.43 86.36 0.55 2.92 16 28 C -0.12 -2.69 5.04 30.67 0.15 -2.53 16 29 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 1.95 6.40 -2.38 -0.02 1.94 16 32 H 0.37 15.52 5.44 -92.71 -0.50 15.02 16 33 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 34 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 2.10 7.41 -2.39 -0.02 2.08 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 1.72 5.93 -2.39 -0.01 1.70 16 39 H 0.09 1.96 7.70 -2.39 -0.02 1.95 16 40 H 0.11 1.62 7.94 -2.39 -0.02 1.60 16 41 H 0.10 1.45 8.08 -2.39 -0.02 1.43 16 42 H 0.07 1.50 8.10 -2.38 -0.02 1.48 16 43 H 0.24 0.31 8.06 -2.91 -0.02 0.29 16 44 H 0.11 -0.09 8.14 -2.38 -0.02 -0.11 16 45 H 0.13 -0.64 8.14 -2.38 -0.02 -0.66 16 46 H 0.10 0.19 8.14 -2.39 -0.02 0.18 16 47 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 48 H 0.08 1.89 7.01 -2.39 -0.02 1.87 16 49 H 0.09 1.85 6.36 -2.39 -0.02 1.84 16 50 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -83.84 397.20 4.38 -79.45 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.37 Total: 24.85 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 7.14 Total: -3.52 kcal Atomic # 7 Polarization: -125.88 SS G_CDS: -4.99 Total: -130.87 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.05 Total: -16.91 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Total: -83.84 4.38 -79.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753283790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.511 kcal (2) G-P(sol) polarization free energy of solvation -83.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds