Wall clock time and date at job start Wed Apr 1 2020 01:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47290 * 120.00044 * 9 7 5 12 12 H 1.48503 * 109.47163 * 240.00049 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 C 1.53038 * 109.45877 * 60.07000 * 13 2 1 15 15 C 1.53198 * 109.31177 * 178.61246 * 14 13 2 16 16 N 1.46922 * 108.77046 * 54.63565 * 15 14 13 17 17 C 1.34782 * 120.62939 * 126.41725 * 16 15 14 18 18 O 1.21280 * 119.99689 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99875 * 359.97365 * 17 16 15 20 20 C 1.53004 * 109.46986 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.46986 * 179.97438 * 20 19 17 22 22 C 1.35345 * 126.75352 * 124.71345 * 21 20 19 23 23 N 1.35314 * 106.17297 * 179.85112 * 22 21 20 24 24 C 1.46505 * 125.86532 * 180.11421 * 23 22 21 25 25 N 1.28709 * 108.26346 * 0.41033 * 23 22 21 26 26 N 1.28633 * 110.18067 * 359.74216 * 25 23 22 27 27 C 1.46923 * 118.74066 * 306.38465 * 16 15 14 28 28 C 1.53031 * 109.46199 * 299.99863 * 13 2 1 29 29 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 33 33 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.45746 * 180.02562 * 13 2 1 35 35 H 1.09006 * 109.49860 * 298.56209 * 14 13 2 36 36 H 1.08999 * 109.50362 * 58.65963 * 14 13 2 37 37 H 1.09002 * 109.58382 * 294.84519 * 15 14 13 38 38 H 1.08997 * 109.70057 * 174.48791 * 15 14 13 39 39 H 1.09002 * 109.46539 * 299.99817 * 19 17 16 40 40 H 1.08997 * 109.47538 * 60.00150 * 19 17 16 41 41 H 1.09002 * 109.46850 * 299.99645 * 20 19 17 42 42 H 1.08997 * 109.47239 * 59.99502 * 20 19 17 43 43 H 1.08001 * 126.91541 * 359.97438 * 22 21 20 44 44 H 1.08996 * 109.47163 * 270.32113 * 24 23 22 45 45 H 1.09002 * 109.46948 * 30.32933 * 24 23 22 46 46 H 1.08998 * 109.46846 * 150.31816 * 24 23 22 47 47 H 1.09005 * 109.58831 * 293.82980 * 27 16 15 48 48 H 1.09001 * 109.58907 * 173.40185 * 27 16 15 49 49 H 1.09000 * 109.50066 * 301.34096 * 28 13 2 50 50 H 1.09007 * 109.49775 * 61.40191 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 2.3606 1.6785 -4.9248 11 1 4.1876 0.2216 -5.5715 12 1 1.9070 -0.3634 -6.1523 13 6 2.0400 -0.7213 1.2493 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4822 16 7 1.7086 -2.1265 3.6814 17 6 1.0559 -2.7167 4.7024 18 8 0.7619 -2.0727 5.6871 19 6 0.6917 -4.1766 4.6202 20 6 -0.0374 -4.5931 5.8993 21 6 -0.4023 -6.0529 5.8169 22 6 -0.0778 -7.0203 6.7063 23 7 -0.6157 -8.1666 6.2292 24 6 -0.5257 -9.4851 6.8614 25 7 -1.2145 -7.9007 5.1214 26 7 -1.1057 -6.6486 4.8474 27 6 2.0706 -0.7041 3.7469 28 6 1.5298 0.0003 2.4986 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 3.2335 -2.3998 -4.2459 34 1 3.1300 -0.7208 1.2493 35 1 0.4414 -2.1662 1.2732 36 1 1.8755 -2.6711 0.3464 37 1 3.1571 -2.9723 2.4136 38 1 1.6361 -3.8908 2.5403 39 1 0.0407 -4.3408 3.7615 40 1 1.5980 -4.7716 4.5082 41 1 0.6132 -4.4287 6.7583 42 1 -0.9438 -3.9981 6.0110 43 1 0.4934 -6.9008 7.6150 44 1 0.3657 -9.9999 6.5029 45 1 -0.4662 -9.3660 7.9433 46 1 -1.4097 -10.0704 6.6085 47 1 3.1555 -0.6043 3.7815 48 1 1.6318 -0.2559 4.6383 49 1 1.8731 1.0347 2.4871 50 1 0.4400 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753283791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:41 Heat of formation + Delta-G solvation = 65.144273 kcal Electronic energy + Delta-G solvation = -28866.376601 eV Core-core repulsion = 24930.873581 eV Total energy + Delta-G solvation = -3935.503021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.54379 -40.22590 -38.07080 -35.53570 -35.30209 -33.78100 -32.88704 -31.37057 -30.49403 -30.20093 -28.35253 -28.10200 -25.86730 -24.81172 -23.55164 -23.04421 -22.40511 -21.62800 -20.93562 -19.37274 -18.34436 -17.66744 -17.24872 -16.97438 -16.80190 -15.82899 -15.78300 -15.12577 -14.84883 -14.39488 -14.36148 -14.16417 -13.86584 -13.81466 -13.63933 -13.44363 -13.16418 -12.95674 -12.81468 -12.53108 -12.32455 -12.12184 -11.84820 -11.81177 -11.57543 -11.48166 -11.31096 -11.00437 -10.91572 -10.83979 -10.54003 -10.37154 -10.28494 -10.22106 -10.05003 -9.81031 -9.59912 -9.50859 -9.41440 -8.88036 -8.53475 -6.91493 -5.74175 -3.01592 1.26396 2.00821 2.24104 2.65560 3.05761 3.44768 3.50794 3.52654 3.93289 4.17886 4.38625 4.46018 4.61213 4.65116 4.73705 4.75641 4.88187 4.99695 5.07868 5.12366 5.17649 5.26753 5.33774 5.41708 5.46421 5.59013 5.60415 5.69999 5.75418 5.85496 5.86052 5.89344 5.99168 6.02788 6.04801 6.19810 6.20548 6.26956 6.33356 6.36257 6.54917 6.63109 6.73640 6.81554 6.97382 7.21063 7.45805 7.74102 8.19192 8.22531 8.45602 9.56586 10.15583 10.49992 11.48874 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.002186 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.091608 B =12807.695645 C =14144.327082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.177 3.823 3 H 0.045 0.955 4 N -0.724 5.724 5 C -0.233 4.233 6 H 0.070 0.930 7 C -0.016 4.016 8 N -0.934 5.934 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 C -0.089 4.089 14 C -0.129 4.129 15 C 0.105 3.895 16 N -0.607 5.607 17 C 0.517 3.483 18 O -0.552 6.552 19 C -0.134 4.134 20 C -0.015 4.015 21 C -0.016 4.016 22 C -0.050 4.050 23 N -0.297 5.297 24 C 0.081 3.919 25 N -0.086 5.086 26 N -0.261 5.261 27 C 0.112 3.888 28 C -0.128 4.128 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.383 0.617 33 H 0.254 0.746 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.191 0.809 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.088 0.912 49 H 0.072 0.928 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 -11.936 25.235 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.367 5.367 5 C -0.365 4.365 6 H 0.088 0.912 7 C -0.212 4.212 8 N -0.583 5.583 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.109 4.109 14 C -0.167 4.167 15 C -0.018 4.018 16 N -0.340 5.340 17 C 0.305 3.695 18 O -0.431 6.431 19 C -0.175 4.175 20 C -0.054 4.054 21 C -0.154 4.154 22 C -0.201 4.201 23 N -0.090 5.090 24 C -0.060 4.060 25 N -0.065 5.065 26 N -0.128 5.128 27 C -0.010 4.010 28 C -0.167 4.167 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.218 0.782 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.208 0.792 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.083 0.917 48 H 0.106 0.894 49 H 0.091 0.909 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.254 -12.091 24.446 27.602 hybrid contribution 0.871 0.266 -0.179 0.928 sum -3.383 -11.825 24.267 27.206 Atomic orbital electron populations 1.22531 0.99567 1.00879 0.99717 1.20196 0.91746 0.95157 0.86126 0.93677 1.42502 1.78131 1.10790 1.05244 1.19299 1.36033 0.93860 0.87290 0.91247 1.24717 1.02493 0.95989 0.97977 1.69661 1.51436 1.08593 1.28635 0.86146 0.77224 0.78796 0.84222 1.20636 1.21989 1.21972 1.21380 1.00281 0.94580 0.94643 1.21981 1.01367 0.96250 0.97090 1.21890 1.00401 0.95087 0.84417 1.48167 1.57003 1.11048 1.17759 1.20599 0.76971 0.89573 0.82311 1.90662 1.54735 1.66028 1.31692 1.21620 1.02425 0.92933 1.00492 1.19601 1.01454 0.86585 0.97810 1.22066 1.01859 0.98010 0.93515 1.23409 1.06778 0.85648 1.04241 1.47256 1.35242 1.09898 1.16651 1.22266 1.05530 0.79578 0.98612 1.78346 1.16478 1.11299 1.00411 1.75093 1.16177 0.98450 1.23098 1.21621 0.99636 0.80258 0.99509 1.22010 1.01547 0.99261 0.93864 0.93196 0.93297 0.94404 0.78200 0.93660 0.91125 0.91262 0.89586 0.91220 0.89849 0.87854 0.88990 0.89412 0.89242 0.79231 0.89020 0.88318 0.88021 0.91741 0.89355 0.90891 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 8.79 37.16 0.33 -2.70 16 2 C 0.18 3.42 2.72 -67.93 -0.18 3.24 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -17.63 5.04 -53.43 -0.27 -17.90 16 5 C -0.23 -6.42 9.93 -15.06 -0.15 -6.57 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 8 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 9 Si 0.90 22.46 29.55 -169.99 -5.02 17.43 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 C -0.09 -1.39 2.14 -90.58 -0.19 -1.58 16 14 C -0.13 -1.89 4.81 -26.61 -0.13 -2.02 16 15 C 0.10 1.25 6.34 -3.71 -0.02 1.23 16 16 N -0.61 -7.59 2.97 -172.77 -0.51 -8.11 16 17 C 0.52 6.63 7.70 -10.98 -0.08 6.54 16 18 O -0.55 -8.56 15.40 5.56 0.09 -8.48 16 19 C -0.13 -1.38 4.02 -27.88 -0.11 -1.49 16 20 C -0.01 -0.14 5.08 -27.88 -0.14 -0.28 16 21 C -0.02 -0.17 6.50 -82.78 -0.54 -0.70 16 22 C -0.05 -0.37 11.54 -17.05 -0.20 -0.56 16 23 N -0.30 -2.30 3.74 -68.06 -0.25 -2.56 16 24 C 0.08 0.19 11.39 59.85 0.68 0.88 16 25 N -0.09 -1.01 13.16 60.35 0.79 -0.22 16 26 N -0.26 -3.39 12.40 33.29 0.41 -2.98 16 27 C 0.11 1.40 6.43 -3.71 -0.02 1.37 16 28 C -0.13 -1.69 4.96 -26.62 -0.13 -1.82 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.89 6.46 -51.93 -0.34 0.56 16 31 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 32 H 0.38 9.75 6.04 -40.82 -0.25 9.50 16 33 H 0.25 7.36 8.31 -40.82 -0.34 7.03 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.05 6.51 -51.93 -0.34 0.71 16 36 H 0.09 1.45 6.46 -51.93 -0.34 1.11 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.87 5.93 -51.93 -0.31 0.56 16 39 H 0.10 1.12 7.70 -51.93 -0.40 0.72 16 40 H 0.09 0.82 7.94 -51.93 -0.41 0.41 16 41 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 42 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 43 H 0.19 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 45 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 46 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.09 1.15 7.01 -51.93 -0.36 0.78 16 49 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.07 0.97 6.51 -51.93 -0.34 0.63 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -35.49 395.11 -7.11 -42.60 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -8.02 Total: 6.53 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -1.00 Total: -5.05 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.89 Total: -58.99 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.49 -7.11 -42.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753283791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.747 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds