Wall clock time and date at job start Wed Apr 1 2020 01:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47290 * 120.00044 * 9 7 5 12 12 H 1.48503 * 109.47163 * 240.00049 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 C 1.53038 * 109.45877 * 60.07000 * 13 2 1 15 15 C 1.53198 * 109.31177 * 178.61246 * 14 13 2 16 16 N 1.46922 * 108.77046 * 54.63565 * 15 14 13 17 17 C 1.34782 * 120.62939 * 126.41725 * 16 15 14 18 18 O 1.21280 * 119.99689 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99875 * 359.97365 * 17 16 15 20 20 C 1.53004 * 109.46986 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.46986 * 179.97438 * 20 19 17 22 22 C 1.35345 * 126.75352 * 124.71345 * 21 20 19 23 23 N 1.35314 * 106.17297 * 179.85112 * 22 21 20 24 24 C 1.46505 * 125.86532 * 180.11421 * 23 22 21 25 25 N 1.28709 * 108.26346 * 0.41033 * 23 22 21 26 26 N 1.28633 * 110.18067 * 359.74216 * 25 23 22 27 27 C 1.46923 * 118.74066 * 306.38465 * 16 15 14 28 28 C 1.53031 * 109.46199 * 299.99863 * 13 2 1 29 29 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 33 33 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.45746 * 180.02562 * 13 2 1 35 35 H 1.09006 * 109.49860 * 298.56209 * 14 13 2 36 36 H 1.08999 * 109.50362 * 58.65963 * 14 13 2 37 37 H 1.09002 * 109.58382 * 294.84519 * 15 14 13 38 38 H 1.08997 * 109.70057 * 174.48791 * 15 14 13 39 39 H 1.09002 * 109.46539 * 299.99817 * 19 17 16 40 40 H 1.08997 * 109.47538 * 60.00150 * 19 17 16 41 41 H 1.09002 * 109.46850 * 299.99645 * 20 19 17 42 42 H 1.08997 * 109.47239 * 59.99502 * 20 19 17 43 43 H 1.08001 * 126.91541 * 359.97438 * 22 21 20 44 44 H 1.08996 * 109.47163 * 270.32113 * 24 23 22 45 45 H 1.09002 * 109.46948 * 30.32933 * 24 23 22 46 46 H 1.08998 * 109.46846 * 150.31816 * 24 23 22 47 47 H 1.09005 * 109.58831 * 293.82980 * 27 16 15 48 48 H 1.09001 * 109.58907 * 173.40185 * 27 16 15 49 49 H 1.09000 * 109.50066 * 301.34096 * 28 13 2 50 50 H 1.09007 * 109.49775 * 61.40191 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 2.3606 1.6785 -4.9248 11 1 4.1876 0.2216 -5.5715 12 1 1.9070 -0.3634 -6.1523 13 6 2.0400 -0.7213 1.2493 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4822 16 7 1.7086 -2.1265 3.6814 17 6 1.0559 -2.7167 4.7024 18 8 0.7619 -2.0727 5.6871 19 6 0.6917 -4.1766 4.6202 20 6 -0.0374 -4.5931 5.8993 21 6 -0.4023 -6.0529 5.8169 22 6 -0.0778 -7.0203 6.7063 23 7 -0.6157 -8.1666 6.2292 24 6 -0.5257 -9.4851 6.8614 25 7 -1.2145 -7.9007 5.1214 26 7 -1.1057 -6.6486 4.8474 27 6 2.0706 -0.7041 3.7469 28 6 1.5298 0.0003 2.4986 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 3.2335 -2.3998 -4.2459 34 1 3.1300 -0.7208 1.2493 35 1 0.4414 -2.1662 1.2732 36 1 1.8755 -2.6711 0.3464 37 1 3.1571 -2.9723 2.4136 38 1 1.6361 -3.8908 2.5403 39 1 0.0407 -4.3408 3.7615 40 1 1.5980 -4.7716 4.5082 41 1 0.6132 -4.4287 6.7583 42 1 -0.9438 -3.9981 6.0110 43 1 0.4934 -6.9008 7.6150 44 1 0.3657 -9.9999 6.5029 45 1 -0.4662 -9.3660 7.9433 46 1 -1.4097 -10.0704 6.6085 47 1 3.1555 -0.6043 3.7815 48 1 1.6318 -0.2559 4.6383 49 1 1.8731 1.0347 2.4871 50 1 0.4400 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753283791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:40 Heat of formation + Delta-G solvation = 41.516622 kcal Electronic energy + Delta-G solvation = -28867.401173 eV Core-core repulsion = 24930.873581 eV Total energy + Delta-G solvation = -3936.527593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.18973 -41.28727 -39.32801 -36.84090 -36.08798 -34.68805 -34.41650 -32.60807 -31.90878 -31.04951 -29.82570 -28.68533 -26.95222 -26.19800 -25.10588 -24.18953 -22.99975 -22.78406 -21.79622 -20.57674 -19.52984 -19.23322 -18.33860 -17.71153 -17.53372 -16.85152 -16.74894 -16.60673 -15.95534 -15.74303 -15.44107 -15.32150 -15.17433 -14.86163 -14.45578 -14.30018 -14.20589 -13.95490 -13.85969 -13.58043 -13.53204 -13.17879 -12.97144 -12.87890 -12.85706 -12.76568 -12.62004 -12.56254 -12.27527 -12.09478 -11.98144 -11.73470 -11.62376 -11.57520 -11.23514 -11.10072 -10.97212 -10.88754 -10.71756 -10.10513 -9.60108 -8.94859 -7.91047 -5.17270 0.67902 1.47636 1.48121 1.49794 1.57685 1.61598 1.65475 2.08816 2.58256 3.32994 3.42434 3.61003 3.77600 3.82151 3.84835 3.96331 4.07113 4.12872 4.18370 4.22014 4.30808 4.36026 4.37951 4.41276 4.44565 4.57064 4.64263 4.66840 4.68402 4.77521 4.79637 4.86172 4.91451 4.97941 5.01951 5.05361 5.12026 5.14931 5.16903 5.27467 5.29704 5.36968 5.45101 5.56293 5.64309 5.72432 5.73370 6.32864 6.45051 7.18834 7.39026 7.53772 8.17931 8.40900 9.32664 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.002186 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.091608 B =12807.695645 C =14144.327082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.040 0.960 4 N -0.735 5.735 5 C -0.232 4.232 6 H 0.071 0.929 7 C -0.078 4.078 8 N -0.968 5.968 9 Si 0.967 3.033 10 H -0.269 1.269 11 H -0.294 1.294 12 H -0.297 1.297 13 C -0.079 4.079 14 C -0.123 4.123 15 C 0.113 3.887 16 N -0.607 5.607 17 C 0.517 3.483 18 O -0.580 6.580 19 C -0.127 4.127 20 C -0.007 4.007 21 C -0.039 4.039 22 C -0.030 4.030 23 N -0.289 5.289 24 C 0.069 3.931 25 N -0.127 5.127 26 N -0.306 5.306 27 C 0.114 3.886 28 C -0.118 4.118 29 H 0.028 0.972 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.375 0.625 33 H 0.249 0.751 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.235 0.765 44 H 0.107 0.893 45 H 0.133 0.867 46 H 0.103 0.897 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 -12.215 27.561 30.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.058 0.942 4 N -0.376 5.376 5 C -0.365 4.365 6 H 0.089 0.911 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.797 3.203 10 H -0.193 1.193 11 H -0.222 1.222 12 H -0.224 1.224 13 C -0.099 4.099 14 C -0.162 4.162 15 C -0.010 4.010 16 N -0.340 5.340 17 C 0.307 3.693 18 O -0.460 6.460 19 C -0.167 4.167 20 C -0.046 4.046 21 C -0.178 4.178 22 C -0.182 4.182 23 N -0.083 5.083 24 C -0.070 4.070 25 N -0.106 5.106 26 N -0.172 5.172 27 C -0.008 4.008 28 C -0.157 4.157 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.209 0.791 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.090 0.910 43 H 0.251 0.749 44 H 0.125 0.875 45 H 0.151 0.849 46 H 0.122 0.878 47 H 0.096 0.904 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.651 -12.367 26.787 29.729 hybrid contribution 0.661 0.345 -0.783 1.081 sum -2.990 -12.022 26.004 28.804 Atomic orbital electron populations 1.22382 0.98434 1.00698 1.00109 1.20430 0.92382 0.94866 0.86026 0.94229 1.42694 1.78299 1.10586 1.06016 1.19642 1.34324 0.94048 0.88443 0.91071 1.25465 1.03473 0.96903 1.01144 1.69804 1.53111 1.09977 1.29087 0.85159 0.76699 0.78163 0.80294 1.19310 1.22155 1.22409 1.21236 0.99806 0.94944 0.93888 1.21870 1.00926 0.95862 0.97523 1.21837 1.00974 0.95329 0.82833 1.48225 1.56824 1.11175 1.17751 1.20978 0.76207 0.90345 0.81773 1.90649 1.55771 1.66847 1.32758 1.21586 1.03045 0.91372 1.00704 1.19513 1.00849 0.86322 0.97940 1.22255 1.02769 0.98634 0.94170 1.24040 1.05160 0.84524 1.04429 1.47688 1.33491 1.11616 1.15499 1.22738 1.06385 0.77511 1.00359 1.78254 1.18666 1.11107 1.02613 1.75014 1.17797 0.99372 1.25023 1.21612 1.00366 0.80161 0.98692 1.21919 1.01144 0.99785 0.92846 0.95247 0.93769 0.91478 0.79125 0.94206 0.91715 0.91875 0.92015 0.90185 0.88173 0.88704 0.87233 0.87772 0.90971 0.74884 0.87487 0.84920 0.87828 0.90449 0.89573 0.89613 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.61 8.79 71.98 0.63 -4.98 16 2 C 0.17 6.56 2.72 44.99 0.12 6.68 16 3 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 4 N -0.73 -36.23 5.04 -322.94 -1.63 -37.86 16 5 C -0.23 -12.87 9.93 84.03 0.83 -12.04 16 6 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 7 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 8 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 9 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 13 C -0.08 -2.41 2.14 -10.77 -0.02 -2.43 16 14 C -0.12 -3.60 4.81 30.67 0.15 -3.45 16 15 C 0.11 2.54 6.34 86.37 0.55 3.09 16 16 N -0.61 -14.21 2.97 -818.90 -2.43 -16.64 16 17 C 0.52 12.53 7.70 87.66 0.67 13.20 16 18 O -0.58 -17.26 15.40 -3.03 -0.05 -17.31 16 19 C -0.13 -2.45 4.02 29.85 0.12 -2.33 16 20 C -0.01 -0.12 5.08 29.85 0.15 0.03 16 21 C -0.04 -0.75 6.50 41.60 0.27 -0.48 16 22 C -0.03 -0.35 11.54 83.49 0.96 0.61 16 23 N -0.29 -3.95 3.74 -369.23 -1.38 -5.33 16 24 C 0.07 0.15 11.39 127.77 1.46 1.60 16 25 N -0.13 -2.99 13.16 37.02 0.49 -2.50 16 26 N -0.31 -8.01 12.40 -48.60 -0.60 -8.61 16 27 C 0.11 2.62 6.43 86.36 0.56 3.17 16 28 C -0.12 -2.92 4.96 30.67 0.15 -2.77 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.04 1.61 6.46 -2.39 -0.02 1.59 16 31 H 0.07 2.00 6.46 -2.39 -0.02 1.98 16 32 H 0.38 19.58 6.04 -92.71 -0.56 19.02 16 33 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 1.90 6.51 -2.38 -0.02 1.89 16 36 H 0.06 2.12 6.46 -2.39 -0.02 2.11 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.10 1.95 5.93 -2.39 -0.01 1.94 16 39 H 0.09 2.03 7.70 -2.39 -0.02 2.01 16 40 H 0.11 1.73 7.94 -2.39 -0.02 1.71 16 41 H 0.10 1.50 8.08 -2.39 -0.02 1.48 16 42 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 43 H 0.23 0.43 8.06 -2.91 -0.02 0.41 16 44 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.13 -0.61 8.14 -2.39 -0.02 -0.63 16 46 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 48 H 0.09 2.08 7.01 -2.39 -0.02 2.07 16 49 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.06 1.69 6.51 -2.38 -0.02 1.67 16 Total: -1.00 -78.72 395.11 4.16 -74.56 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.39 Total: 27.90 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 7.07 Total: -4.10 kcal Atomic # 7 Polarization: -124.42 SS G_CDS: -5.28 Total: -129.70 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.05 Total: -17.31 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -78.72 4.16 -74.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753283791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.079 kcal (2) G-P(sol) polarization free energy of solvation -78.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds