Wall clock time and date at job start Tue Mar 31 2020 23:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46890 * 2 1 4 4 C 1.52992 * 109.47371 * 239.99534 * 2 1 3 5 5 C 1.52999 * 109.47175 * 300.00349 * 4 2 1 6 6 C 1.53006 * 109.46887 * 299.99696 * 5 4 2 7 7 C 1.52997 * 109.46961 * 60.00523 * 6 5 4 8 8 C 1.53007 * 109.47127 * 299.99462 * 7 6 5 9 9 C 1.52992 * 109.47409 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47242 * 65.52505 * 9 8 7 11 11 C 1.36935 * 120.00299 * 175.04121 * 10 9 8 12 12 H 1.07999 * 120.00016 * 359.97438 * 11 10 9 13 13 C 1.38815 * 120.00323 * 179.97438 * 11 10 9 14 14 N 1.31621 * 119.99737 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00102 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47113 * 90.00194 * 15 13 11 17 17 H 1.48503 * 109.47160 * 209.99734 * 15 13 11 18 18 H 1.48497 * 109.47349 * 330.00037 * 15 13 11 19 19 N 1.46497 * 109.47198 * 300.00666 * 8 7 6 20 20 C 1.34773 * 119.99944 * 183.94501 * 19 8 7 21 21 O 1.21684 * 120.00510 * 354.66038 * 20 19 8 22 22 C 1.46774 * 119.99906 * 174.66412 * 20 19 8 23 23 C 1.41485 * 126.51937 * 359.68307 * 22 20 19 24 24 N 1.30287 * 108.19209 * 180.26363 * 23 22 20 25 25 N 1.39897 * 109.22975 * 0.02562 * 24 23 22 26 26 C 1.46504 * 125.74430 * 179.97438 * 25 24 23 27 27 C 1.34846 * 108.50740 * 359.97438 * 25 24 23 28 28 N 1.38011 * 126.44659 * 179.97438 * 27 25 24 29 29 H 1.09002 * 109.47427 * 300.00744 * 1 2 3 30 30 H 1.09005 * 109.46863 * 60.00352 * 1 2 3 31 31 H 1.09008 * 109.47279 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47109 * 180.02562 * 4 2 1 33 33 H 1.08996 * 109.47097 * 60.00277 * 4 2 1 34 34 H 1.09002 * 109.47374 * 180.02562 * 5 4 2 35 35 H 1.08995 * 109.47215 * 60.00055 * 5 4 2 36 36 H 1.08995 * 109.47486 * 300.00193 * 6 5 4 37 37 H 1.09002 * 109.46934 * 180.02562 * 6 5 4 38 38 H 1.08996 * 109.47556 * 179.97438 * 7 6 5 39 39 H 1.08995 * 109.47290 * 59.99551 * 7 6 5 40 40 H 1.09000 * 109.47424 * 185.52579 * 9 8 7 41 41 H 1.09000 * 109.47065 * 305.52463 * 9 8 7 42 42 H 0.97001 * 120.00079 * 355.03280 * 10 9 8 43 43 H 0.97004 * 119.99934 * 180.02562 * 14 13 11 44 44 H 0.97004 * 120.00090 * 3.93692 * 19 8 7 45 45 H 1.07999 * 125.90780 * 0.22803 * 23 22 20 46 46 H 1.09007 * 109.46778 * 270.03388 * 26 25 24 47 47 H 1.08992 * 109.47350 * 30.03521 * 26 25 24 48 48 H 1.09000 * 109.46878 * 150.03953 * 26 25 24 49 49 H 0.96994 * 119.99885 * 180.02562 * 28 27 25 50 50 H 0.97000 * 120.00129 * 0.04901 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5300 -2.1638 -1.2491 6 6 2.0400 -2.8850 0.0003 7 6 1.5299 -2.1637 1.2494 8 6 2.0399 -0.7211 1.2494 9 6 1.5304 0.0000 2.4988 10 7 2.1246 -0.6096 3.6910 11 6 1.8942 -0.0646 4.9259 12 1 1.2747 0.8149 5.0210 13 6 2.4568 -0.6426 6.0557 14 7 3.2114 -1.7148 5.9399 15 14 2.1431 0.1013 7.7401 16 1 0.9290 -0.5134 8.3344 17 1 3.3105 -0.1574 8.6208 18 1 1.9404 1.5661 7.6044 19 7 3.5049 -0.7211 1.2494 20 6 4.1787 0.4433 1.3297 21 8 3.5743 1.4991 1.3043 22 6 5.6417 0.4379 1.4479 23 6 6.4783 -0.7021 1.4965 24 7 7.7115 -0.2971 1.6086 25 7 7.7364 1.1013 1.6384 26 6 8.9362 1.9337 1.7567 27 6 6.4700 1.5541 1.5399 28 7 6.0698 2.8749 1.5326 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 3.1301 -0.7217 -1.2488 33 1 1.6768 -0.2075 -2.1391 34 1 1.8937 -2.6778 -2.1388 35 1 0.4400 -2.1638 -1.2491 36 1 3.1299 -2.8850 0.0004 37 1 1.6770 -3.9128 0.0001 38 1 1.8928 -2.6776 2.1395 39 1 0.4399 -2.1637 1.2493 40 1 1.8106 1.0522 2.4508 41 1 0.4449 -0.0849 2.5500 42 1 2.6812 -1.3995 3.6057 43 1 3.6043 -2.1189 6.7294 44 1 3.9899 -1.5592 1.1918 45 1 6.1512 -1.7303 1.4494 46 1 9.1472 2.1193 2.8099 47 1 9.7821 1.4184 1.3020 48 1 8.7718 2.8827 1.2464 49 1 5.1284 3.0960 1.4575 50 1 6.7300 3.5822 1.6023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753532142.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:12 Heat of formation + Delta-G solvation = 44.578017 kcal Electronic energy + Delta-G solvation = -31434.239066 eV Core-core repulsion = 27497.844225 eV Total energy + Delta-G solvation = -3936.394841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 12.24 seconds Orbital eigenvalues (eV) -41.13508 -40.16425 -37.45753 -34.85569 -34.49570 -33.08349 -32.81523 -31.89716 -31.01315 -29.41603 -28.38257 -27.07587 -26.06635 -24.89195 -22.88981 -22.40184 -21.82445 -20.98005 -20.24369 -19.75536 -17.88188 -17.81409 -16.98242 -16.74753 -15.82501 -15.63384 -15.49013 -15.21931 -14.52306 -14.38389 -14.19953 -13.84931 -13.54431 -13.46962 -13.12547 -13.08116 -12.84135 -12.71453 -12.64074 -12.53433 -12.25378 -12.07229 -11.77216 -11.33593 -11.28295 -11.09058 -10.95995 -10.84052 -10.72066 -10.66465 -10.59585 -10.12304 -10.00572 -9.91930 -9.67490 -9.51248 -8.98759 -8.84987 -8.62500 -8.23800 -7.56987 -6.69535 -5.62177 -2.86787 2.10527 2.36787 2.57902 3.50863 3.56023 3.57771 3.79414 3.86488 4.18425 4.50682 4.71425 4.95813 5.00399 5.01869 5.04736 5.09795 5.25256 5.41584 5.44924 5.47157 5.60557 5.64089 5.65118 5.73485 5.80897 5.87527 5.91314 5.95007 6.00737 6.13194 6.21090 6.29770 6.32074 6.34648 6.44346 6.47224 6.58480 6.67700 6.71722 6.76256 6.79592 6.90468 7.12450 7.35844 7.46739 7.55438 7.84461 7.98995 8.30506 8.57778 9.04304 9.68901 10.30024 10.65473 11.61064 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006933 B = 0.006193 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4037.403967 B = 4520.118079 C = 7241.433178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.090 0.910 4 C -0.108 4.108 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.123 4.123 8 C 0.187 3.813 9 C 0.141 3.859 10 N -0.723 5.723 11 C -0.224 4.224 12 H 0.066 0.934 13 C -0.017 4.017 14 N -0.934 5.934 15 Si 0.901 3.099 16 H -0.292 1.292 17 H -0.294 1.294 18 H -0.284 1.284 19 N -0.707 5.707 20 C 0.618 3.382 21 O -0.565 6.565 22 C -0.358 4.358 23 C 0.117 3.883 24 N -0.312 5.312 25 N -0.405 5.405 26 C 0.104 3.896 27 C 0.430 3.570 28 N -0.831 5.831 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.018 0.982 42 H 0.382 0.618 43 H 0.251 0.749 44 H 0.392 0.608 45 H 0.185 0.815 46 H 0.072 0.928 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.432 0.568 50 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 3.680 -16.595 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.160 4.160 8 C 0.101 3.899 9 C 0.013 3.987 10 N -0.367 5.367 11 C -0.356 4.356 12 H 0.084 0.916 13 C -0.212 4.212 14 N -0.584 5.584 15 Si 0.733 3.267 16 H -0.220 1.220 17 H -0.220 1.220 18 H -0.210 1.210 19 N -0.356 5.356 20 C 0.408 3.592 21 O -0.446 6.446 22 C -0.378 4.378 23 C -0.073 4.073 24 N -0.131 5.131 25 N -0.194 5.194 26 C -0.037 4.037 27 C 0.196 3.804 28 N -0.381 5.381 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.036 0.964 42 H 0.216 0.784 43 H 0.061 0.939 44 H 0.226 0.774 45 H 0.202 0.798 46 H 0.091 0.909 47 H 0.110 0.890 48 H 0.096 0.904 49 H 0.268 0.732 50 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 6.457 4.198 -16.353 18.076 hybrid contribution -0.473 0.352 1.155 1.296 sum 5.984 4.549 -15.199 16.956 Atomic orbital electron populations 1.21967 0.95383 1.01733 1.01489 1.21439 0.95447 1.01147 0.93697 0.89159 1.21483 1.00621 0.95186 0.97295 1.21572 1.00813 0.95916 0.97370 1.21545 1.00554 0.98715 0.94800 1.21823 1.01613 0.94446 0.98150 1.20429 0.79123 0.95232 0.95115 1.21132 0.95028 0.97196 0.85350 1.42212 1.59821 1.33583 1.01069 1.19205 1.24099 1.07922 0.84354 0.91614 1.24641 1.00780 0.98348 0.97451 1.69647 1.37923 1.22772 1.28081 0.86259 0.76971 0.78406 0.85039 1.21956 1.22045 1.21037 1.45532 1.06336 1.08130 1.75607 1.16666 0.84724 0.83619 0.74240 1.90573 1.69588 1.31277 1.53124 1.19390 0.94079 0.90893 1.33408 1.23718 0.89665 0.99094 0.94792 1.77071 1.20913 0.86388 1.28759 1.48090 1.03789 1.05320 1.62175 1.21728 0.85700 0.93303 1.03000 1.18036 0.85019 0.86358 0.91025 1.41737 1.12954 1.01274 1.82159 0.92111 0.93368 0.92388 0.92148 0.92836 0.92819 0.91890 0.92261 0.92176 0.90363 0.90510 0.93461 0.96439 0.78427 0.93883 0.77422 0.79820 0.90942 0.89022 0.90405 0.73151 0.77702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.15 37.16 0.30 -1.68 16 2 C -0.10 -1.43 2.10 -90.62 -0.19 -1.62 16 3 H 0.09 1.54 6.28 -51.93 -0.33 1.22 16 4 C -0.11 -1.35 5.29 -26.74 -0.14 -1.49 16 5 C -0.12 -1.33 5.65 -26.73 -0.15 -1.48 16 6 C -0.12 -1.41 5.75 -26.73 -0.15 -1.57 16 7 C -0.12 -1.84 4.40 -26.73 -0.12 -1.96 16 8 C 0.19 3.10 0.09 -131.82 -0.01 3.09 16 9 C 0.14 3.02 4.27 -4.05 -0.02 3.00 16 10 N -0.72 -18.55 5.18 -59.92 -0.31 -18.87 16 11 C -0.22 -6.50 9.99 -15.06 -0.15 -6.65 16 12 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 13 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 14 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 15 Si 0.90 23.35 29.55 -169.99 -5.02 18.32 16 16 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 17 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 18 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 19 N -0.71 -11.60 3.56 -48.87 -0.17 -11.77 16 20 C 0.62 11.26 7.20 -12.81 -0.09 11.17 16 21 O -0.56 -11.27 11.44 5.20 0.06 -11.21 16 22 C -0.36 -6.09 6.15 -104.82 -0.64 -6.74 16 23 C 0.12 1.82 11.50 -16.97 -0.20 1.63 16 24 N -0.31 -4.94 12.47 30.88 0.38 -4.55 16 25 N -0.41 -5.61 4.00 -66.81 -0.27 -5.88 16 26 C 0.10 0.91 11.25 59.85 0.67 1.58 16 27 C 0.43 6.52 7.98 -153.78 -1.23 5.29 16 28 N -0.83 -10.22 9.02 31.40 0.28 -9.93 16 29 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.72 4.81 -51.92 -0.25 0.47 16 32 H 0.06 0.80 7.60 -51.93 -0.39 0.40 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 36 H 0.06 0.68 6.78 -51.93 -0.35 0.33 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.36 7.11 -51.93 -0.37 0.99 16 39 H 0.08 1.14 6.43 -51.93 -0.33 0.80 16 40 H 0.05 1.13 6.25 -51.93 -0.32 0.81 16 41 H 0.02 0.39 6.74 -51.93 -0.35 0.04 16 42 H 0.38 10.12 6.47 -40.82 -0.26 9.86 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.39 5.75 6.16 -40.82 -0.25 5.50 16 45 H 0.18 2.34 7.51 -52.49 -0.39 1.94 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 0.45 7.46 -51.93 -0.39 0.07 16 49 H 0.43 5.94 7.01 -40.82 -0.29 5.66 16 50 H 0.39 3.35 8.04 -40.82 -0.33 3.02 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -35.38 377.49 -8.22 -43.59 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -7.37 Total: 20.60 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.21 Total: 1.99 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: 0.64 Total: -78.98 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.06 Total: -11.21 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.38 -8.22 -43.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753532142.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.171 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.24 seconds