Wall clock time and date at job start Tue Mar 31 2020 23:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46890 * 2 1 4 4 C 1.52992 * 109.47371 * 239.99534 * 2 1 3 5 5 C 1.52999 * 109.47175 * 300.00349 * 4 2 1 6 6 C 1.53006 * 109.46887 * 299.99696 * 5 4 2 7 7 C 1.52997 * 109.46961 * 60.00523 * 6 5 4 8 8 C 1.53007 * 109.47127 * 299.99462 * 7 6 5 9 9 C 1.52992 * 109.47409 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47242 * 65.52505 * 9 8 7 11 11 C 1.36935 * 120.00299 * 175.04121 * 10 9 8 12 12 H 1.07999 * 120.00016 * 359.97438 * 11 10 9 13 13 C 1.38815 * 120.00323 * 179.97438 * 11 10 9 14 14 N 1.31621 * 119.99737 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00102 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47113 * 90.00194 * 15 13 11 17 17 H 1.48503 * 109.47160 * 209.99734 * 15 13 11 18 18 H 1.48497 * 109.47349 * 330.00037 * 15 13 11 19 19 N 1.46497 * 109.47198 * 300.00666 * 8 7 6 20 20 C 1.34773 * 119.99944 * 183.94501 * 19 8 7 21 21 O 1.21684 * 120.00510 * 354.66038 * 20 19 8 22 22 C 1.46774 * 119.99906 * 174.66412 * 20 19 8 23 23 C 1.41485 * 126.51937 * 359.68307 * 22 20 19 24 24 N 1.30287 * 108.19209 * 180.26363 * 23 22 20 25 25 N 1.39897 * 109.22975 * 0.02562 * 24 23 22 26 26 C 1.46504 * 125.74430 * 179.97438 * 25 24 23 27 27 C 1.34846 * 108.50740 * 359.97438 * 25 24 23 28 28 N 1.38011 * 126.44659 * 179.97438 * 27 25 24 29 29 H 1.09002 * 109.47427 * 300.00744 * 1 2 3 30 30 H 1.09005 * 109.46863 * 60.00352 * 1 2 3 31 31 H 1.09008 * 109.47279 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47109 * 180.02562 * 4 2 1 33 33 H 1.08996 * 109.47097 * 60.00277 * 4 2 1 34 34 H 1.09002 * 109.47374 * 180.02562 * 5 4 2 35 35 H 1.08995 * 109.47215 * 60.00055 * 5 4 2 36 36 H 1.08995 * 109.47486 * 300.00193 * 6 5 4 37 37 H 1.09002 * 109.46934 * 180.02562 * 6 5 4 38 38 H 1.08996 * 109.47556 * 179.97438 * 7 6 5 39 39 H 1.08995 * 109.47290 * 59.99551 * 7 6 5 40 40 H 1.09000 * 109.47424 * 185.52579 * 9 8 7 41 41 H 1.09000 * 109.47065 * 305.52463 * 9 8 7 42 42 H 0.97001 * 120.00079 * 355.03280 * 10 9 8 43 43 H 0.97004 * 119.99934 * 180.02562 * 14 13 11 44 44 H 0.97004 * 120.00090 * 3.93692 * 19 8 7 45 45 H 1.07999 * 125.90780 * 0.22803 * 23 22 20 46 46 H 1.09007 * 109.46778 * 270.03388 * 26 25 24 47 47 H 1.08992 * 109.47350 * 30.03521 * 26 25 24 48 48 H 1.09000 * 109.46878 * 150.03953 * 26 25 24 49 49 H 0.96994 * 119.99885 * 180.02562 * 28 27 25 50 50 H 0.97000 * 120.00129 * 0.04901 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5300 -2.1638 -1.2491 6 6 2.0400 -2.8850 0.0003 7 6 1.5299 -2.1637 1.2494 8 6 2.0399 -0.7211 1.2494 9 6 1.5304 0.0000 2.4988 10 7 2.1246 -0.6096 3.6910 11 6 1.8942 -0.0646 4.9259 12 1 1.2747 0.8149 5.0210 13 6 2.4568 -0.6426 6.0557 14 7 3.2114 -1.7148 5.9399 15 14 2.1431 0.1013 7.7401 16 1 0.9290 -0.5134 8.3344 17 1 3.3105 -0.1574 8.6208 18 1 1.9404 1.5661 7.6044 19 7 3.5049 -0.7211 1.2494 20 6 4.1787 0.4433 1.3297 21 8 3.5743 1.4991 1.3043 22 6 5.6417 0.4379 1.4479 23 6 6.4783 -0.7021 1.4965 24 7 7.7115 -0.2971 1.6086 25 7 7.7364 1.1013 1.6384 26 6 8.9362 1.9337 1.7567 27 6 6.4700 1.5541 1.5399 28 7 6.0698 2.8749 1.5326 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 3.1301 -0.7217 -1.2488 33 1 1.6768 -0.2075 -2.1391 34 1 1.8937 -2.6778 -2.1388 35 1 0.4400 -2.1638 -1.2491 36 1 3.1299 -2.8850 0.0004 37 1 1.6770 -3.9128 0.0001 38 1 1.8928 -2.6776 2.1395 39 1 0.4399 -2.1637 1.2493 40 1 1.8106 1.0522 2.4508 41 1 0.4449 -0.0849 2.5500 42 1 2.6812 -1.3995 3.6057 43 1 3.6043 -2.1189 6.7294 44 1 3.9899 -1.5592 1.1918 45 1 6.1512 -1.7303 1.4494 46 1 9.1472 2.1193 2.8099 47 1 9.7821 1.4184 1.3020 48 1 8.7718 2.8827 1.2464 49 1 5.1284 3.0960 1.4575 50 1 6.7300 3.5822 1.6023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753532142.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:10 Heat of formation + Delta-G solvation = 19.783609 kcal Electronic energy + Delta-G solvation = -31435.314232 eV Core-core repulsion = 27497.844225 eV Total energy + Delta-G solvation = -3937.470007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 5.84 seconds Orbital eigenvalues (eV) -42.30199 -41.42710 -38.76053 -36.38598 -35.89780 -34.51178 -33.96991 -33.16064 -32.65904 -30.95540 -29.54956 -28.07633 -27.45396 -26.40124 -24.65520 -23.70903 -22.96302 -22.19573 -21.47134 -21.00005 -19.39299 -19.00993 -18.77938 -17.89516 -16.98481 -16.86661 -16.69111 -16.58714 -16.15136 -15.71425 -15.60026 -15.13436 -15.01018 -14.78668 -14.59789 -14.38796 -14.13950 -13.89131 -13.71516 -13.51691 -13.49966 -13.46753 -13.03496 -12.84227 -12.81979 -12.57708 -12.38019 -12.19493 -12.17952 -12.07633 -11.88748 -11.81617 -11.76451 -11.12829 -11.04941 -10.95305 -10.82587 -10.23772 -9.93556 -9.61009 -8.85924 -8.74403 -7.89913 -5.14207 0.93202 1.33006 1.37402 1.43346 1.44906 1.52965 2.53259 2.59127 2.80870 2.86193 3.42846 3.59144 3.77238 3.91648 3.95580 4.09724 4.18240 4.30801 4.32728 4.37752 4.45324 4.51582 4.54200 4.57230 4.65444 4.65752 4.76206 4.79928 4.88995 4.95356 5.00990 5.06452 5.21199 5.25452 5.26629 5.33750 5.36052 5.43584 5.47508 5.52145 5.53870 5.60322 5.66055 5.72264 5.97414 6.31057 6.32677 6.56267 6.85944 7.02391 7.39734 7.67702 8.18514 8.45629 9.32963 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006933 B = 0.006193 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4037.403967 B = 4520.118079 C = 7241.433178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.063 0.937 4 C -0.102 4.102 5 C -0.113 4.113 6 C -0.113 4.113 7 C -0.117 4.117 8 C 0.194 3.806 9 C 0.145 3.855 10 N -0.726 5.726 11 C -0.235 4.235 12 H 0.060 0.940 13 C -0.071 4.071 14 N -0.961 5.961 15 Si 0.964 3.036 16 H -0.285 1.285 17 H -0.295 1.295 18 H -0.279 1.279 19 N -0.701 5.701 20 C 0.609 3.391 21 O -0.591 6.591 22 C -0.393 4.393 23 C 0.112 3.888 24 N -0.329 5.329 25 N -0.402 5.402 26 C 0.092 3.908 27 C 0.424 3.576 28 N -0.818 5.818 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.020 0.980 41 H 0.017 0.983 42 H 0.376 0.624 43 H 0.248 0.752 44 H 0.400 0.600 45 H 0.203 0.797 46 H 0.079 0.921 47 H 0.104 0.896 48 H 0.109 0.891 49 H 0.426 0.574 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.892 3.595 -17.914 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.081 0.919 4 C -0.139 4.139 5 C -0.150 4.150 6 C -0.151 4.151 7 C -0.155 4.155 8 C 0.107 3.893 9 C 0.017 3.983 10 N -0.369 5.369 11 C -0.368 4.368 12 H 0.078 0.922 13 C -0.263 4.263 14 N -0.613 5.613 15 Si 0.794 3.206 16 H -0.212 1.212 17 H -0.222 1.222 18 H -0.204 1.204 19 N -0.350 5.350 20 C 0.400 3.600 21 O -0.474 6.474 22 C -0.413 4.413 23 C -0.078 4.078 24 N -0.148 5.148 25 N -0.191 5.191 26 C -0.048 4.048 27 C 0.188 3.812 28 N -0.369 5.369 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.038 0.962 41 H 0.035 0.965 42 H 0.209 0.791 43 H 0.057 0.943 44 H 0.235 0.765 45 H 0.219 0.781 46 H 0.098 0.902 47 H 0.123 0.877 48 H 0.127 0.873 49 H 0.261 0.739 50 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.747 4.134 -17.694 19.383 hybrid contribution -0.531 0.484 1.566 1.723 sum 6.216 4.618 -16.129 17.891 Atomic orbital electron populations 1.21944 0.94250 1.02552 1.01504 1.21340 0.96327 0.99645 0.93850 0.91874 1.21431 1.00104 0.96156 0.96258 1.21550 1.01286 0.94644 0.97566 1.21528 1.00868 0.99238 0.93422 1.21750 1.01677 0.93165 0.98861 1.20334 0.79288 0.96011 0.93631 1.21171 0.94723 0.96088 0.86308 1.42283 1.59770 1.33361 1.01464 1.19496 1.23658 1.07680 0.85922 0.92157 1.25364 1.01121 0.99064 1.00779 1.69791 1.38918 1.23908 1.28653 0.85279 0.76750 0.77871 0.80736 1.21174 1.22207 1.20406 1.45474 1.06256 1.08183 1.75104 1.16987 0.85471 0.83616 0.73951 1.90550 1.70251 1.32118 1.54447 1.19536 0.93736 0.92408 1.35573 1.24023 0.89453 0.99781 0.94495 1.76986 1.20986 0.87816 1.29048 1.48410 1.04532 1.04949 1.61219 1.22172 0.84339 0.94115 1.04172 1.18176 0.85554 0.86973 0.90515 1.41683 1.13150 1.00902 1.81157 0.94112 0.91383 0.91090 0.92971 0.91395 0.90602 0.91066 0.91815 0.90486 0.93132 0.90245 0.96198 0.96548 0.79073 0.94287 0.76496 0.78064 0.90213 0.87732 0.87301 0.73854 0.75519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 8.15 71.98 0.59 -3.15 16 2 C -0.09 -2.67 2.10 -10.79 -0.02 -2.69 16 3 H 0.06 2.21 6.28 -2.39 -0.01 2.20 16 4 C -0.10 -2.35 5.29 30.59 0.16 -2.18 16 5 C -0.11 -2.16 5.65 30.60 0.17 -1.99 16 6 C -0.11 -2.46 5.75 30.60 0.18 -2.28 16 7 C -0.12 -3.46 4.40 30.60 0.13 -3.32 16 8 C 0.19 6.51 0.09 3.61 0.00 6.51 16 9 C 0.14 6.42 4.27 86.38 0.37 6.79 16 10 N -0.73 -38.46 5.18 -343.48 -1.78 -40.24 16 11 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 12 H 0.06 3.57 7.83 -2.91 -0.02 3.54 16 13 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 14 N -0.96 -59.93 13.06 21.65 0.28 -59.65 16 15 Si 0.96 48.49 29.55 68.60 2.03 50.51 16 16 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 17 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 18 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 19 N -0.70 -23.52 3.56 -426.75 -1.52 -25.03 16 20 C 0.61 22.89 7.20 86.48 0.62 23.52 16 21 O -0.59 -24.57 11.44 -4.30 -0.05 -24.62 16 22 C -0.39 -13.59 6.15 -19.99 -0.12 -13.71 16 23 C 0.11 3.51 11.50 85.72 0.99 4.49 16 24 N -0.33 -10.26 12.47 -56.23 -0.70 -10.96 16 25 N -0.40 -10.76 4.00 -365.30 -1.46 -12.22 16 26 C 0.09 1.41 11.25 127.77 1.44 2.85 16 27 C 0.42 12.77 7.98 132.69 1.06 13.83 16 28 N -0.82 -19.74 9.02 -54.57 -0.49 -20.23 16 29 H 0.04 1.19 6.56 -2.39 -0.02 1.18 16 30 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.07 1.64 4.81 -2.38 -0.01 1.62 16 32 H 0.05 1.30 7.60 -2.38 -0.02 1.28 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.28 6.43 -2.39 -0.02 1.27 16 36 H 0.06 1.34 6.78 -2.39 -0.02 1.32 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.78 7.11 -2.39 -0.02 1.77 16 39 H 0.08 2.29 6.43 -2.39 -0.02 2.27 16 40 H 0.02 1.01 6.25 -2.39 -0.01 0.99 16 41 H 0.02 0.75 6.74 -2.39 -0.02 0.73 16 42 H 0.38 20.60 6.47 -92.71 -0.60 20.00 16 43 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.40 11.89 6.16 -92.71 -0.57 11.32 16 45 H 0.20 5.15 7.51 -2.91 -0.02 5.12 16 46 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.11 0.97 7.46 -2.39 -0.02 0.95 16 49 H 0.43 11.88 7.01 -92.71 -0.65 11.23 16 50 H 0.41 6.43 8.04 -92.71 -0.75 5.69 16 Total: -1.00 -77.84 377.49 1.62 -76.21 By element: Atomic # 1 Polarization: 55.99 SS G_CDS: -1.55 Total: 54.44 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 6.87 Total: 11.79 kcal Atomic # 7 Polarization: -162.66 SS G_CDS: -5.67 Total: -168.33 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.05 Total: -24.62 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.51 kcal Total: -77.84 1.62 -76.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753532142.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.996 kcal (2) G-P(sol) polarization free energy of solvation -77.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.84 seconds