Wall clock time and date at job start Tue Mar 31 2020 23:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47198 * 2 1 4 4 C 1.53008 * 109.47128 * 119.99374 * 2 1 3 5 5 C 1.52998 * 109.47128 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47245 * 300.00292 * 5 4 2 7 7 C 1.52994 * 109.47199 * 59.99830 * 6 5 4 8 8 C 1.52994 * 109.47451 * 300.00030 * 7 6 5 9 9 C 1.53003 * 109.47465 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47466 * 304.32175 * 9 8 7 11 11 C 1.36938 * 120.00011 * 174.91546 * 10 9 8 12 12 H 1.08001 * 120.00088 * 359.97438 * 11 10 9 13 13 C 1.38812 * 119.99695 * 179.97438 * 11 10 9 14 14 N 1.31624 * 120.00117 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99819 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47588 * 59.99820 * 15 13 11 17 17 H 1.48509 * 109.47197 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47008 * 299.99530 * 15 13 11 19 19 N 1.46502 * 109.47465 * 299.99986 * 8 7 6 20 20 C 1.34773 * 119.99666 * 304.18348 * 19 8 7 21 21 O 1.21690 * 120.00465 * 354.51360 * 20 19 8 22 22 C 1.46778 * 119.99857 * 174.51352 * 20 19 8 23 23 C 1.41481 * 126.51557 * 359.97438 * 22 20 19 24 24 N 1.30290 * 108.18714 * 179.75528 * 23 22 20 25 25 N 1.39901 * 109.23162 * 0.38872 * 24 23 22 26 26 C 1.46495 * 125.74675 * 179.87286 * 25 24 23 27 27 C 1.34847 * 108.50170 * 359.60399 * 25 24 23 28 28 N 1.38014 * 126.43996 * 180.19219 * 27 25 24 29 29 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47501 * 300.00584 * 1 2 3 31 31 H 1.09004 * 109.47035 * 60.00588 * 1 2 3 32 32 H 1.09001 * 109.46964 * 300.00371 * 4 2 1 33 33 H 1.09002 * 109.46570 * 60.00241 * 4 2 1 34 34 H 1.09004 * 109.46721 * 60.00418 * 5 4 2 35 35 H 1.08996 * 109.46741 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.46580 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.46776 * 300.00212 * 6 5 4 38 38 H 1.08999 * 109.47345 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.47353 * 60.00150 * 7 6 5 40 40 H 1.09009 * 109.46602 * 64.32095 * 9 8 7 41 41 H 1.09000 * 109.47358 * 184.31392 * 9 8 7 42 42 H 0.97003 * 119.99756 * 354.91193 * 10 9 8 43 43 H 0.97001 * 119.99707 * 180.02562 * 14 13 11 44 44 H 0.97003 * 120.00178 * 124.17204 * 19 8 7 45 45 H 1.07997 * 125.90937 * 0.03521 * 23 22 20 46 46 H 1.08999 * 109.46974 * 269.68625 * 26 25 24 47 47 H 1.08999 * 109.47084 * 149.68886 * 26 25 24 48 48 H 1.09005 * 109.47517 * 29.68735 * 26 25 24 49 49 H 0.96995 * 120.00293 * 0.02960 * 28 27 25 50 50 H 0.96997 * 119.99436 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5700 -0.7206 1.2497 6 6 4.0806 -1.4415 0.0005 7 6 3.5706 -0.7204 -1.2487 8 6 2.0406 -0.7210 -1.2492 9 6 1.5306 0.0007 -2.4982 10 7 2.1015 1.3488 -2.5506 11 6 1.8697 2.1487 -3.6376 12 1 1.2664 1.7856 -4.4565 13 6 2.4103 3.4263 -3.6870 14 7 3.1451 3.8691 -2.6888 15 14 2.0936 4.5177 -5.1695 16 1 0.6328 4.7403 -5.3175 17 1 2.7767 5.8225 -4.9787 18 1 2.6201 3.8580 -6.3914 19 7 1.5527 -2.1024 -1.2494 20 6 1.9469 -2.9560 -2.2149 21 8 2.6269 -2.5552 -3.1411 22 6 1.5561 -4.3693 -2.1493 23 6 0.7736 -4.9805 -1.1414 24 7 0.6411 -6.2421 -1.4384 25 7 1.3266 -6.5099 -2.6283 26 6 1.4168 -7.8142 -3.2891 27 6 1.8852 -5.3638 -3.0674 28 7 2.6415 -5.2062 -4.2111 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6766 -0.2072 2.1393 33 1 1.6767 -1.7488 1.2494 34 1 3.9329 0.3073 1.2499 35 1 3.9332 -1.2339 2.1400 36 1 5.1706 -1.4415 0.0011 37 1 3.7175 -2.4693 0.0004 38 1 3.9339 -1.2343 -2.1387 39 1 3.9335 0.3074 -1.2486 40 1 1.8298 -0.5554 -3.3867 41 1 0.4433 0.0677 -2.4606 42 1 2.6436 1.6749 -1.8152 43 1 3.5225 4.7620 -2.7232 44 1 0.9461 -2.4026 -0.5546 45 1 0.3543 -4.4858 -0.2778 46 1 2.2918 -8.3489 -2.9195 47 1 1.5067 -7.6705 -4.3658 48 1 0.5190 -8.3937 -3.0735 49 1 2.8142 -5.9672 -4.7871 50 1 3.0003 -4.3343 -4.4388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753532144.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:39 Heat of formation + Delta-G solvation = 44.242239 kcal Electronic energy + Delta-G solvation = -31006.628714 eV Core-core repulsion = 27070.219313 eV Total energy + Delta-G solvation = -3936.409401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.42883 -40.18259 -37.54961 -35.08212 -34.40545 -33.36699 -33.09716 -32.12830 -31.21761 -29.29343 -28.40160 -27.16577 -26.18351 -24.84110 -23.17820 -22.38259 -21.52610 -20.98227 -20.44268 -20.03456 -18.27818 -18.13531 -17.08207 -16.97338 -16.09050 -15.91799 -15.19201 -14.81064 -14.72101 -14.40881 -14.21625 -13.93643 -13.81673 -13.66482 -13.44328 -13.29417 -13.04802 -12.92145 -12.68628 -12.48314 -12.46781 -11.64106 -11.50444 -11.38802 -11.35985 -11.23516 -10.98267 -10.92669 -10.79570 -10.69698 -10.44959 -10.25033 -10.02383 -9.83954 -9.71727 -9.53183 -9.16043 -9.02431 -8.65829 -8.42564 -7.86885 -6.72849 -5.63784 -2.89602 1.81477 2.07705 2.24851 3.52461 3.53956 3.56203 3.57346 3.68886 3.83887 4.26667 4.71876 4.75893 4.80570 4.99827 5.02626 5.06960 5.11802 5.17221 5.32998 5.44815 5.55464 5.57083 5.70750 5.77271 5.82983 5.90250 5.92082 5.97666 6.14059 6.16579 6.17735 6.25600 6.32390 6.44405 6.47412 6.49451 6.57587 6.63263 6.70767 6.73046 6.99144 7.04997 7.08498 7.18447 7.28106 7.33795 7.71037 7.83390 8.08081 8.56068 8.79389 9.66912 10.26634 10.61638 11.59499 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.003638 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.286605 B = 7694.283737 C = 8924.518670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.094 0.906 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.125 4.125 8 C 0.186 3.814 9 C 0.143 3.857 10 N -0.725 5.725 11 C -0.227 4.227 12 H 0.067 0.933 13 C -0.016 4.016 14 N -0.936 5.936 15 Si 0.904 3.096 16 H -0.288 1.288 17 H -0.293 1.293 18 H -0.288 1.288 19 N -0.712 5.712 20 C 0.602 3.398 21 O -0.553 6.553 22 C -0.366 4.366 23 C 0.112 3.888 24 N -0.311 5.311 25 N -0.405 5.405 26 C 0.103 3.897 27 C 0.432 3.568 28 N -0.830 5.830 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.015 0.985 42 H 0.382 0.618 43 H 0.253 0.747 44 H 0.391 0.609 45 H 0.185 0.815 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.093 0.907 49 H 0.397 0.603 50 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.661 -22.664 5.468 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.112 0.888 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.163 4.163 8 C 0.101 3.899 9 C 0.015 3.985 10 N -0.370 5.370 11 C -0.359 4.359 12 H 0.085 0.915 13 C -0.212 4.212 14 N -0.586 5.586 15 Si 0.736 3.264 16 H -0.215 1.215 17 H -0.219 1.219 18 H -0.215 1.215 19 N -0.363 5.363 20 C 0.391 3.609 21 O -0.433 6.433 22 C -0.386 4.386 23 C -0.078 4.078 24 N -0.129 5.129 25 N -0.193 5.193 26 C -0.039 4.039 27 C 0.197 3.803 28 N -0.380 5.380 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.217 0.783 43 H 0.063 0.937 44 H 0.226 0.774 45 H 0.202 0.798 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.111 0.889 49 H 0.225 0.775 50 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.738 -23.531 5.004 24.213 hybrid contribution 0.247 1.282 -0.853 1.559 sum -2.491 -22.249 4.150 22.770 Atomic orbital electron populations 1.21863 0.95234 1.00800 1.02498 1.21368 0.95763 1.00880 0.93047 0.88822 1.21588 0.95740 0.99953 0.97591 1.21541 0.95608 1.01045 0.97495 1.21481 0.99498 0.99167 0.94973 1.21879 0.94127 1.02154 0.98180 1.20417 0.93926 0.79780 0.95786 1.21096 0.95283 0.87024 0.95088 1.42298 1.61604 1.10786 1.22346 1.19177 1.25381 0.94530 0.96821 0.91498 1.24664 1.00843 0.97634 0.98025 1.69642 1.39076 1.18278 1.31607 0.86300 0.77448 0.80015 0.82637 1.21485 1.21852 1.21458 1.45757 1.49873 1.11365 1.29337 1.16870 0.78919 0.83499 0.81626 1.90684 1.40517 1.78120 1.33956 1.19442 1.21649 0.94781 1.02700 1.23731 0.95165 0.91048 0.97861 1.77089 1.19873 1.17282 0.98697 1.48128 1.43697 1.06794 1.20722 1.21767 1.04247 0.81405 0.96437 1.18072 0.88282 0.86679 0.87241 1.41836 1.57101 1.16117 1.22943 0.93620 0.93018 0.91187 0.92233 0.92583 0.91745 0.92843 0.92849 0.92662 0.89819 0.90260 0.93596 0.96708 0.78270 0.93690 0.77391 0.79788 0.90887 0.90208 0.88859 0.77479 0.72899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.68 37.16 0.32 -1.73 16 2 C -0.09 -1.40 1.87 -90.61 -0.17 -1.57 16 3 H 0.09 1.72 7.03 -51.93 -0.36 1.35 16 4 C -0.11 -1.38 5.03 -26.73 -0.13 -1.51 16 5 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 6 C -0.11 -1.66 5.77 -26.73 -0.15 -1.81 16 7 C -0.13 -2.24 4.24 -26.74 -0.11 -2.36 16 8 C 0.19 3.14 0.11 -131.82 -0.01 3.13 16 9 C 0.14 3.09 4.96 -4.04 -0.02 3.07 16 10 N -0.72 -18.63 4.99 -59.91 -0.30 -18.93 16 11 C -0.23 -6.56 9.99 -15.06 -0.15 -6.71 16 12 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 13 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 14 N -0.94 -28.61 13.06 55.49 0.72 -27.88 16 15 Si 0.90 23.08 29.55 -169.99 -5.02 18.06 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 N -0.71 -10.06 3.73 -48.87 -0.18 -10.24 16 20 C 0.60 9.33 7.12 -12.81 -0.09 9.24 16 21 O -0.55 -10.25 11.35 5.20 0.06 -10.19 16 22 C -0.37 -4.85 6.15 -104.82 -0.64 -5.50 16 23 C 0.11 1.27 11.50 -16.97 -0.20 1.07 16 24 N -0.31 -3.72 12.47 30.88 0.38 -3.33 16 25 N -0.40 -4.22 4.00 -66.82 -0.27 -4.49 16 26 C 0.10 0.59 11.25 59.84 0.67 1.26 16 27 C 0.43 5.10 7.98 -153.78 -1.23 3.87 16 28 N -0.83 -7.97 9.02 31.40 0.28 -7.68 16 29 H 0.04 0.53 6.78 -51.93 -0.35 0.18 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.16 6.34 -51.93 -0.33 0.84 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.61 6.95 -51.93 -0.36 0.25 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.78 7.54 -51.93 -0.39 0.39 16 38 H 0.08 1.69 6.05 -51.93 -0.31 1.38 16 39 H 0.08 1.63 6.71 -51.93 -0.35 1.28 16 40 H 0.05 1.11 6.20 -51.92 -0.32 0.79 16 41 H 0.02 0.33 6.21 -51.93 -0.32 0.01 16 42 H 0.38 10.15 5.38 -40.82 -0.22 9.93 16 43 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.39 4.50 5.14 -40.82 -0.21 4.29 16 45 H 0.19 1.49 7.51 -52.49 -0.39 1.10 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.28 7.46 -51.93 -0.39 -0.11 16 48 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.40 2.38 8.04 -40.82 -0.33 2.05 16 50 H 0.43 4.99 7.01 -40.82 -0.29 4.71 16 LS Contribution 379.04 15.07 5.71 5.71 Total: -1.00 -34.79 379.04 -8.22 -43.01 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -7.44 Total: 17.80 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.17 Total: -1.83 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: 0.64 Total: -72.55 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.06 Total: -10.19 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.79 -8.22 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753532144.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.249 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds