Wall clock time and date at job start Tue Mar 31 2020 23:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47198 * 2 1 4 4 C 1.53008 * 109.47128 * 119.99374 * 2 1 3 5 5 C 1.52998 * 109.47128 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47245 * 300.00292 * 5 4 2 7 7 C 1.52994 * 109.47199 * 59.99830 * 6 5 4 8 8 C 1.52994 * 109.47451 * 300.00030 * 7 6 5 9 9 C 1.53003 * 109.47465 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47466 * 304.32175 * 9 8 7 11 11 C 1.36938 * 120.00011 * 174.91546 * 10 9 8 12 12 H 1.08001 * 120.00088 * 359.97438 * 11 10 9 13 13 C 1.38812 * 119.99695 * 179.97438 * 11 10 9 14 14 N 1.31624 * 120.00117 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99819 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47588 * 59.99820 * 15 13 11 17 17 H 1.48509 * 109.47197 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47008 * 299.99530 * 15 13 11 19 19 N 1.46502 * 109.47465 * 299.99986 * 8 7 6 20 20 C 1.34773 * 119.99666 * 304.18348 * 19 8 7 21 21 O 1.21690 * 120.00465 * 354.51360 * 20 19 8 22 22 C 1.46778 * 119.99857 * 174.51352 * 20 19 8 23 23 C 1.41481 * 126.51557 * 359.97438 * 22 20 19 24 24 N 1.30290 * 108.18714 * 179.75528 * 23 22 20 25 25 N 1.39901 * 109.23162 * 0.38872 * 24 23 22 26 26 C 1.46495 * 125.74675 * 179.87286 * 25 24 23 27 27 C 1.34847 * 108.50170 * 359.60399 * 25 24 23 28 28 N 1.38014 * 126.43996 * 180.19219 * 27 25 24 29 29 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47501 * 300.00584 * 1 2 3 31 31 H 1.09004 * 109.47035 * 60.00588 * 1 2 3 32 32 H 1.09001 * 109.46964 * 300.00371 * 4 2 1 33 33 H 1.09002 * 109.46570 * 60.00241 * 4 2 1 34 34 H 1.09004 * 109.46721 * 60.00418 * 5 4 2 35 35 H 1.08996 * 109.46741 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.46580 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.46776 * 300.00212 * 6 5 4 38 38 H 1.08999 * 109.47345 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.47353 * 60.00150 * 7 6 5 40 40 H 1.09009 * 109.46602 * 64.32095 * 9 8 7 41 41 H 1.09000 * 109.47358 * 184.31392 * 9 8 7 42 42 H 0.97003 * 119.99756 * 354.91193 * 10 9 8 43 43 H 0.97001 * 119.99707 * 180.02562 * 14 13 11 44 44 H 0.97003 * 120.00178 * 124.17204 * 19 8 7 45 45 H 1.07997 * 125.90937 * 0.03521 * 23 22 20 46 46 H 1.08999 * 109.46974 * 269.68625 * 26 25 24 47 47 H 1.08999 * 109.47084 * 149.68886 * 26 25 24 48 48 H 1.09005 * 109.47517 * 29.68735 * 26 25 24 49 49 H 0.96995 * 120.00293 * 0.02960 * 28 27 25 50 50 H 0.96997 * 119.99436 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5700 -0.7206 1.2497 6 6 4.0806 -1.4415 0.0005 7 6 3.5706 -0.7204 -1.2487 8 6 2.0406 -0.7210 -1.2492 9 6 1.5306 0.0007 -2.4982 10 7 2.1015 1.3488 -2.5506 11 6 1.8697 2.1487 -3.6376 12 1 1.2664 1.7856 -4.4565 13 6 2.4103 3.4263 -3.6870 14 7 3.1451 3.8691 -2.6888 15 14 2.0936 4.5177 -5.1695 16 1 0.6328 4.7403 -5.3175 17 1 2.7767 5.8225 -4.9787 18 1 2.6201 3.8580 -6.3914 19 7 1.5527 -2.1024 -1.2494 20 6 1.9469 -2.9560 -2.2149 21 8 2.6269 -2.5552 -3.1411 22 6 1.5561 -4.3693 -2.1493 23 6 0.7736 -4.9805 -1.1414 24 7 0.6411 -6.2421 -1.4384 25 7 1.3266 -6.5099 -2.6283 26 6 1.4168 -7.8142 -3.2891 27 6 1.8852 -5.3638 -3.0674 28 7 2.6415 -5.2062 -4.2111 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6766 -0.2072 2.1393 33 1 1.6767 -1.7488 1.2494 34 1 3.9329 0.3073 1.2499 35 1 3.9332 -1.2339 2.1400 36 1 5.1706 -1.4415 0.0011 37 1 3.7175 -2.4693 0.0004 38 1 3.9339 -1.2343 -2.1387 39 1 3.9335 0.3074 -1.2486 40 1 1.8298 -0.5554 -3.3867 41 1 0.4433 0.0677 -2.4606 42 1 2.6436 1.6749 -1.8152 43 1 3.5225 4.7620 -2.7232 44 1 0.9461 -2.4026 -0.5546 45 1 0.3543 -4.4858 -0.2778 46 1 2.2918 -8.3489 -2.9195 47 1 1.5067 -7.6705 -4.3658 48 1 0.5190 -8.3937 -3.0735 49 1 2.8142 -5.9672 -4.7871 50 1 3.0003 -4.3343 -4.4388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753532144.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:38 Heat of formation + Delta-G solvation = 19.744450 kcal Electronic energy + Delta-G solvation = -31007.691018 eV Core-core repulsion = 27070.219313 eV Total energy + Delta-G solvation = -3937.471705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -42.33776 -41.43278 -38.79434 -36.28840 -35.91455 -34.64055 -33.97509 -33.37298 -33.06438 -30.78648 -29.40533 -27.94585 -27.56466 -26.41009 -24.83241 -23.70704 -22.78688 -21.88673 -21.70109 -21.05781 -19.63184 -19.18279 -19.02683 -17.94029 -16.95758 -16.81859 -16.60061 -16.22799 -16.06616 -15.80290 -15.49050 -15.28373 -15.09308 -14.97254 -14.74363 -14.53861 -14.14698 -14.13768 -13.66903 -13.56318 -13.46625 -13.17697 -12.95499 -12.86045 -12.70948 -12.67326 -12.45873 -12.23984 -12.20781 -12.13966 -11.87690 -11.76973 -11.72957 -11.32410 -11.09310 -10.98078 -10.80511 -10.28584 -9.95905 -9.73736 -8.90256 -8.78284 -7.91214 -5.17727 0.90718 1.33531 1.34494 1.45432 1.49152 1.55121 2.45202 2.61594 2.71670 2.82230 3.41099 3.58920 3.75694 3.88790 3.89453 4.09816 4.18803 4.24153 4.25746 4.35330 4.40623 4.51932 4.54740 4.57406 4.63858 4.67986 4.71243 4.74318 4.82653 4.97392 5.03450 5.08621 5.17325 5.22647 5.26403 5.33771 5.38574 5.42045 5.45145 5.48906 5.51910 5.59794 5.63844 5.67060 5.89659 6.29055 6.31415 6.55899 6.83692 6.99776 7.37511 7.62186 8.14444 8.40561 9.32036 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.003638 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.286605 B = 7694.283737 C = 8924.518670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.056 0.944 4 C -0.104 4.104 5 C -0.118 4.118 6 C -0.104 4.104 7 C -0.119 4.119 8 C 0.201 3.799 9 C 0.147 3.853 10 N -0.730 5.730 11 C -0.241 4.241 12 H 0.064 0.936 13 C -0.072 4.072 14 N -0.966 5.966 15 Si 0.971 3.029 16 H -0.278 1.278 17 H -0.292 1.292 18 H -0.283 1.283 19 N -0.698 5.698 20 C 0.598 3.402 21 O -0.591 6.591 22 C -0.393 4.393 23 C 0.117 3.883 24 N -0.326 5.326 25 N -0.402 5.402 26 C 0.091 3.909 27 C 0.426 3.574 28 N -0.821 5.821 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.018 0.982 41 H 0.014 0.986 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.408 0.592 45 H 0.215 0.785 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.413 0.587 50 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 -24.986 6.735 26.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.074 0.926 4 C -0.141 4.141 5 C -0.155 4.155 6 C -0.142 4.142 7 C -0.157 4.157 8 C 0.114 3.886 9 C 0.020 3.980 10 N -0.374 5.374 11 C -0.374 4.374 12 H 0.082 0.918 13 C -0.264 4.264 14 N -0.617 5.617 15 Si 0.800 3.200 16 H -0.204 1.204 17 H -0.218 1.218 18 H -0.210 1.210 19 N -0.351 5.351 20 C 0.389 3.611 21 O -0.473 6.473 22 C -0.412 4.412 23 C -0.073 4.073 24 N -0.145 5.145 25 N -0.191 5.191 26 C -0.049 4.049 27 C 0.190 3.810 28 N -0.371 5.371 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.032 0.968 42 H 0.210 0.790 43 H 0.060 0.940 44 H 0.246 0.754 45 H 0.231 0.769 46 H 0.106 0.894 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.245 0.755 50 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -3.923 -25.940 6.273 26.975 hybrid contribution 0.617 1.903 -1.348 2.412 sum -3.306 -24.037 4.925 24.758 Atomic orbital electron populations 1.21824 0.93943 1.02497 1.01702 1.21281 0.96787 0.98962 0.93678 0.92585 1.21574 0.95004 1.01218 0.96293 1.21541 0.96276 1.00115 0.97564 1.21408 0.99562 0.99332 0.93893 1.21725 0.95041 0.99911 0.99053 1.20014 0.93102 0.81026 0.94410 1.21122 0.94903 0.85313 0.96682 1.42391 1.61547 1.12082 1.21406 1.19512 1.25075 0.95262 0.97508 0.91796 1.25461 1.01053 0.98979 1.00935 1.69802 1.40113 1.18419 1.33410 0.85258 0.77646 0.77889 0.79248 1.20404 1.21760 1.20959 1.45485 1.50015 1.09785 1.29766 1.17267 0.78236 0.84543 0.81040 1.90675 1.42247 1.78950 1.35470 1.19357 1.23621 0.93669 1.04584 1.24155 0.94280 0.90713 0.98104 1.77039 1.20366 1.17576 0.99501 1.48416 1.42819 1.07578 1.20289 1.22166 1.05393 0.79681 0.97612 1.18214 0.88218 0.87168 0.87434 1.41804 1.56276 1.16400 1.22643 0.90627 0.91229 0.94562 0.90255 0.89847 0.93537 0.89892 0.92803 0.91462 0.92696 0.93964 0.96408 0.96817 0.79026 0.94028 0.75378 0.76874 0.89430 0.87973 0.87984 0.75515 0.73885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.68 71.98 0.62 -3.16 16 2 C -0.09 -2.65 1.87 -10.79 -0.02 -2.67 16 3 H 0.06 2.13 7.03 -2.39 -0.02 2.12 16 4 C -0.10 -2.27 5.03 30.60 0.15 -2.12 16 5 C -0.12 -2.86 5.92 30.59 0.18 -2.68 16 6 C -0.10 -2.98 5.77 30.59 0.18 -2.81 16 7 C -0.12 -4.47 4.24 30.59 0.13 -4.34 16 8 C 0.20 6.94 0.11 3.60 0.00 6.94 16 9 C 0.15 6.69 4.96 86.38 0.43 7.12 16 10 N -0.73 -39.66 4.99 -343.44 -1.72 -41.38 16 11 C -0.24 -14.46 9.99 84.03 0.84 -13.62 16 12 H 0.06 3.78 7.83 -2.91 -0.02 3.75 16 13 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 14 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 15 Si 0.97 48.41 29.55 68.60 2.03 50.44 16 16 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 17 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 18 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 19 N -0.70 -19.14 3.73 -426.74 -1.59 -20.73 16 20 C 0.60 18.51 7.12 86.48 0.62 19.12 16 21 O -0.59 -22.83 11.35 -4.32 -0.05 -22.88 16 22 C -0.39 -9.93 6.15 -19.99 -0.12 -10.05 16 23 C 0.12 2.37 11.50 85.72 0.99 3.36 16 24 N -0.33 -7.02 12.47 -56.23 -0.70 -7.72 16 25 N -0.40 -7.52 4.00 -365.32 -1.46 -8.98 16 26 C 0.09 0.81 11.25 127.77 1.44 2.25 16 27 C 0.43 9.51 7.98 132.69 1.06 10.57 16 28 N -0.82 -15.16 9.02 -54.57 -0.49 -15.65 16 29 H 0.07 1.53 6.78 -2.39 -0.02 1.51 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.20 6.34 -2.39 -0.02 1.19 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.42 6.95 -2.39 -0.02 1.40 16 34 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.78 7.54 -2.39 -0.02 1.76 16 38 H 0.05 2.37 6.05 -2.39 -0.01 2.35 16 39 H 0.04 1.88 6.71 -2.38 -0.02 1.86 16 40 H 0.02 0.92 6.20 -2.38 -0.01 0.90 16 41 H 0.01 0.64 6.21 -2.39 -0.01 0.63 16 42 H 0.38 21.27 5.38 -92.71 -0.50 20.78 16 43 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.41 8.28 5.14 -92.71 -0.48 7.80 16 45 H 0.21 2.65 7.51 -2.91 -0.02 2.63 16 46 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.10 0.43 7.46 -2.39 -0.02 0.41 16 48 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 49 H 0.41 4.37 8.04 -92.71 -0.75 3.63 16 50 H 0.43 9.96 7.01 -92.71 -0.65 9.31 16 Total: -1.00 -79.56 379.04 1.89 -77.67 By element: Atomic # 1 Polarization: 47.21 SS G_CDS: -1.36 Total: 45.85 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 6.95 Total: 4.05 kcal Atomic # 7 Polarization: -149.45 SS G_CDS: -5.68 Total: -155.13 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.05 Total: -22.88 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -79.56 1.89 -77.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753532144.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.414 kcal (2) G-P(sol) polarization free energy of solvation -79.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds