Wall clock time and date at job start Wed Apr 1 2020 00:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52537 * 2 1 4 4 C 1.53195 * 109.49760 * 120.07960 * 2 1 3 5 5 N 1.46919 * 108.89273 * 174.65835 * 4 2 1 6 6 C 1.34780 * 120.63395 * 126.29715 * 5 4 2 7 7 O 1.21284 * 119.99750 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00162 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46896 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47063 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47344 * 179.97438 * 10 9 8 12 12 C 1.50693 * 109.47498 * 179.97438 * 11 10 9 13 13 C 1.35358 * 126.91467 * 84.99747 * 12 11 10 14 14 N 1.33769 * 106.49636 * 179.97438 * 13 12 11 15 15 N 1.28632 * 108.88954 * 0.02562 * 14 13 12 16 16 N 1.28722 * 110.17640 * 359.75296 * 15 14 13 17 17 H 0.96997 * 125.86420 * 180.23602 * 16 15 14 18 18 C 1.46933 * 118.74003 * 306.32349 * 5 4 2 19 19 C 1.53188 * 108.77495 * 53.60503 * 18 5 4 20 20 C 1.53034 * 109.31404 * 305.36890 * 19 18 5 21 21 H 1.08996 * 109.45916 * 181.37287 * 20 19 18 22 22 N 1.46506 * 109.46080 * 301.34180 * 20 19 18 23 23 C 1.36932 * 120.00206 * 275.00497 * 22 20 19 24 24 H 1.07995 * 120.00021 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99589 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99546 * 179.97438 * 25 23 22 27 27 Si 1.86793 * 120.00338 * 359.97438 * 25 23 22 28 28 H 1.48497 * 109.47210 * 90.00278 * 27 25 23 29 29 H 1.48510 * 109.47031 * 210.00044 * 27 25 23 30 30 H 1.48499 * 109.47089 * 329.99735 * 27 25 23 31 31 H 1.09005 * 109.46904 * 299.91811 * 1 2 3 32 32 H 1.08994 * 109.46936 * 59.92176 * 1 2 3 33 33 H 1.08994 * 109.47295 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.58720 * 54.79865 * 4 2 1 35 35 H 1.08996 * 109.58651 * 294.51761 * 4 2 1 36 36 H 1.09000 * 109.47171 * 299.99537 * 8 6 5 37 37 H 1.08993 * 109.47429 * 60.00485 * 8 6 5 38 38 H 1.08999 * 109.47240 * 299.99805 * 9 8 6 39 39 H 1.09003 * 109.47483 * 59.99982 * 9 8 6 40 40 H 1.09004 * 109.47236 * 299.99654 * 10 9 8 41 41 H 1.09000 * 109.47541 * 59.99685 * 10 9 8 42 42 H 1.09004 * 109.46737 * 300.00040 * 11 10 9 43 43 H 1.09000 * 109.46993 * 59.99429 * 11 10 9 44 44 H 1.08002 * 126.74570 * 359.94008 * 13 12 11 45 45 H 1.08994 * 109.58580 * 173.39910 * 18 5 4 46 46 H 1.09006 * 109.57831 * 293.67403 * 18 5 4 47 47 H 1.08994 * 109.49494 * 65.32533 * 19 18 5 48 48 H 1.09000 * 109.49460 * 185.41816 * 19 18 5 49 49 H 0.97007 * 119.99656 * 95.00201 * 22 20 19 50 50 H 0.97001 * 120.00000 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5047 -0.8290 1.1731 6 6 4.2790 -0.3843 2.1827 7 8 3.7687 0.1079 3.1667 8 6 5.7787 -0.4988 2.0890 9 6 6.4142 0.0747 3.3572 10 6 7.9368 -0.0409 3.2618 11 6 8.5724 0.5331 4.5296 12 6 10.0720 0.4187 4.4359 13 6 10.9180 1.2894 3.8373 14 7 12.1497 0.7924 3.9962 15 7 12.0717 -0.3130 4.6494 16 7 10.8443 -0.5727 4.9375 17 1 10.5274 -1.3471 5.4281 18 6 4.1083 -1.4277 -0.0253 19 6 3.5766 -0.6973 -1.2625 20 6 2.0466 -0.7256 -1.2483 21 1 1.6659 -0.2277 -2.1401 22 7 1.5842 -2.1156 -1.2305 23 6 1.4555 -2.8095 -2.4039 24 1 1.6945 -2.3320 -3.3426 25 6 1.0179 -4.1267 -2.3868 26 7 0.8937 -4.7936 -3.5148 27 14 0.6053 -4.9529 -0.7632 28 1 -0.8288 -4.7333 -0.4464 29 1 0.8716 -6.4102 -0.8675 30 1 1.4450 -4.3723 0.3152 31 1 -0.3633 0.5126 0.8908 32 1 -0.3633 0.5150 -0.8892 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6053 -1.7216 1.2981 35 1 1.7616 -0.1592 2.1390 36 1 6.0573 -1.5475 1.9858 37 1 6.1321 0.0582 1.2213 38 1 6.1356 1.1234 3.4609 39 1 6.0608 -0.4826 4.2247 40 1 8.2158 -1.0895 3.1579 41 1 8.2900 0.5166 2.3943 42 1 8.2933 1.5818 4.6330 43 1 8.2193 -0.0241 5.3973 44 1 10.6509 2.2050 3.3305 45 1 5.1924 -1.3254 0.0216 46 1 3.8429 -2.4836 -0.0794 47 1 3.9216 0.3365 -1.2508 48 1 3.9413 -1.1929 -2.1622 49 1 1.3692 -2.5445 -0.3873 50 1 0.5876 -5.7139 -3.5030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753759940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:23 Heat of formation + Delta-G solvation = 50.824580 kcal Electronic energy + Delta-G solvation = -28858.995821 eV Core-core repulsion = 24922.871852 eV Total energy + Delta-G solvation = -3936.123969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.69040 -40.24408 -38.05380 -36.26780 -34.45620 -33.77342 -33.11687 -32.53774 -31.56176 -29.82351 -29.56371 -26.79911 -25.61310 -24.48343 -23.36404 -23.20617 -22.25640 -21.74378 -21.50782 -19.61595 -18.62180 -18.22713 -17.91884 -16.95242 -16.43534 -16.28159 -15.81000 -15.24003 -14.91732 -14.82155 -14.61018 -14.47254 -13.98455 -13.78383 -13.64157 -13.48884 -13.03217 -12.76840 -12.64548 -12.45965 -12.38949 -12.06856 -11.77638 -11.71853 -11.62099 -11.51687 -11.39819 -11.22487 -11.05486 -10.99601 -10.99523 -10.92656 -10.66499 -10.59804 -10.27629 -9.90548 -9.71426 -9.61298 -9.52591 -9.01884 -8.40800 -7.34555 -5.84663 -3.20091 1.13730 2.16079 2.32318 2.68947 3.10495 3.28007 3.31524 3.38441 3.94767 4.19534 4.41853 4.46538 4.50524 4.53168 4.71657 4.92209 4.95163 5.02325 5.06830 5.09808 5.12899 5.17041 5.28524 5.31601 5.38004 5.44414 5.48851 5.55335 5.55583 5.59021 5.71983 5.73145 5.82367 5.87379 5.88161 6.00484 6.03266 6.15942 6.24183 6.32607 6.40182 6.42309 6.50665 6.60902 6.69508 6.83087 7.55858 7.91652 8.04728 8.24527 8.34480 9.12503 9.85118 10.04939 11.33695 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016664 B = 0.002126 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.857044 B =13169.048603 C =13822.713705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.512 3.488 7 O -0.555 6.555 8 C -0.140 4.140 9 C -0.102 4.102 10 C -0.116 4.116 11 C -0.049 4.049 12 C -0.004 4.004 13 C -0.049 4.049 14 N -0.266 5.266 15 N -0.085 5.085 16 N -0.391 5.391 17 H 0.447 0.553 18 C 0.112 3.888 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.060 0.940 22 N -0.743 5.743 23 C -0.241 4.241 24 H 0.091 0.909 25 C 0.006 3.994 26 N -0.932 5.932 27 Si 0.879 3.121 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.191 0.809 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.052 0.948 48 H 0.080 0.920 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.158 11.519 15.401 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.089 0.911 4 C -0.006 4.006 5 N -0.337 5.337 6 C 0.300 3.700 7 O -0.434 6.434 8 C -0.180 4.180 9 C -0.140 4.140 10 C -0.155 4.155 11 C -0.089 4.089 12 C -0.138 4.138 13 C -0.206 4.206 14 N -0.133 5.133 15 N -0.066 5.066 16 N -0.112 5.112 17 H 0.293 0.707 18 C -0.011 4.011 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.078 0.922 22 N -0.387 5.387 23 C -0.371 4.371 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.580 5.580 27 Si 0.709 3.291 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.098 0.902 44 H 0.208 0.792 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.071 0.929 48 H 0.098 0.902 49 H 0.194 0.806 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.424 11.326 15.705 24.145 hybrid contribution -1.627 -1.083 1.101 2.244 sum 12.797 10.243 16.806 23.476 Atomic orbital electron populations 1.21669 0.94206 1.02769 1.00957 1.21802 0.96490 0.99242 0.95585 0.91080 1.21621 0.79070 1.00939 0.98943 1.48190 1.07042 1.59950 1.18502 1.20637 0.89468 0.77493 0.82389 1.90656 1.75652 1.45656 1.31463 1.21687 0.92203 1.03562 1.00555 1.21327 0.92973 1.02538 0.97199 1.21641 0.95306 1.01456 0.97065 1.20220 0.84879 1.04102 0.99689 1.22408 0.96807 0.91712 1.02893 1.23459 0.88601 1.02886 1.05653 1.75109 1.22473 1.02965 1.12760 1.78314 0.99947 1.12774 1.15519 1.45162 1.06021 1.20448 1.39530 0.70734 1.21760 0.96748 0.98640 0.83935 1.22491 1.00012 0.98983 0.97569 1.20243 0.90941 0.86152 0.95258 0.92175 1.42841 1.80665 1.09373 1.05841 1.19051 1.37584 0.94146 0.86298 0.89152 1.24645 1.01565 0.96730 0.96016 1.69689 1.53033 1.10860 1.24428 0.86660 0.78505 0.79272 0.84634 1.21048 1.21772 1.20554 0.93511 0.92275 0.91738 0.91688 0.89562 0.89024 0.88780 0.90796 0.91095 0.91774 0.90906 0.88375 0.90165 0.79209 0.90781 0.90265 0.92892 0.90192 0.80608 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.07 37.16 0.34 -1.65 16 2 C -0.11 -1.63 2.68 -90.34 -0.24 -1.88 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.77 5.41 -3.71 -0.02 1.75 16 5 N -0.60 -8.54 2.97 -172.77 -0.51 -9.05 16 6 C 0.51 6.84 7.70 -10.98 -0.08 6.76 16 7 O -0.56 -9.05 15.39 5.55 0.09 -8.97 16 8 C -0.14 -1.25 4.05 -27.88 -0.11 -1.36 16 9 C -0.10 -0.75 4.50 -26.73 -0.12 -0.87 16 10 C -0.12 -0.59 5.20 -26.73 -0.14 -0.73 16 11 C -0.05 -0.20 5.78 -27.89 -0.16 -0.36 16 12 C 0.00 -0.03 6.56 -82.09 -0.54 -0.56 16 13 C -0.05 -0.38 11.99 -17.73 -0.21 -0.60 16 14 N -0.27 -2.93 12.41 30.24 0.38 -2.55 16 15 N -0.09 -0.87 13.38 60.35 0.81 -0.06 16 16 N -0.39 -2.53 6.98 33.54 0.23 -2.29 16 17 H 0.45 1.31 8.96 -190.40 -1.71 -0.40 16 18 C 0.11 1.53 6.08 -3.71 -0.02 1.51 16 19 C -0.15 -2.20 5.78 -26.62 -0.15 -2.36 16 20 C 0.18 3.13 2.54 -67.73 -0.17 2.96 16 21 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 22 N -0.74 -15.63 3.46 -53.23 -0.18 -15.82 16 23 C -0.24 -6.23 10.41 -15.06 -0.16 -6.38 16 24 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 26 N -0.93 -28.06 13.97 55.49 0.78 -27.28 16 27 Si 0.88 21.12 27.73 -169.99 -4.71 16.41 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.05 7.55 -51.93 -0.39 0.66 16 34 H 0.06 1.08 6.64 -51.93 -0.34 0.73 16 35 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 36 H 0.09 0.74 7.94 -51.93 -0.41 0.33 16 37 H 0.09 0.72 7.69 -51.93 -0.40 0.32 16 38 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.19 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 46 H 0.08 1.29 7.75 -51.93 -0.40 0.89 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.36 7.64 3.79 -40.82 -0.15 7.49 16 50 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -33.83 395.53 -8.63 -42.46 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -9.56 Total: 4.91 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.90 Total: -3.72 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 1.49 Total: -57.06 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.71 Total: 16.41 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.83 -8.63 -42.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753759940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.287 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds