Wall clock time and date at job start Wed Apr 1 2020 00:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52537 * 2 1 4 4 C 1.53195 * 109.49760 * 120.07960 * 2 1 3 5 5 N 1.46919 * 108.89273 * 174.65835 * 4 2 1 6 6 C 1.34780 * 120.63395 * 126.29715 * 5 4 2 7 7 O 1.21284 * 119.99750 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00162 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46896 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47063 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47344 * 179.97438 * 10 9 8 12 12 C 1.50693 * 109.47498 * 179.97438 * 11 10 9 13 13 C 1.35358 * 126.91467 * 84.99747 * 12 11 10 14 14 N 1.33769 * 106.49636 * 179.97438 * 13 12 11 15 15 N 1.28632 * 108.88954 * 0.02562 * 14 13 12 16 16 N 1.28722 * 110.17640 * 359.75296 * 15 14 13 17 17 H 0.96997 * 125.86420 * 180.23602 * 16 15 14 18 18 C 1.46933 * 118.74003 * 306.32349 * 5 4 2 19 19 C 1.53188 * 108.77495 * 53.60503 * 18 5 4 20 20 C 1.53034 * 109.31404 * 305.36890 * 19 18 5 21 21 H 1.08996 * 109.45916 * 181.37287 * 20 19 18 22 22 N 1.46506 * 109.46080 * 301.34180 * 20 19 18 23 23 C 1.36932 * 120.00206 * 275.00497 * 22 20 19 24 24 H 1.07995 * 120.00021 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99589 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99546 * 179.97438 * 25 23 22 27 27 Si 1.86793 * 120.00338 * 359.97438 * 25 23 22 28 28 H 1.48497 * 109.47210 * 90.00278 * 27 25 23 29 29 H 1.48510 * 109.47031 * 210.00044 * 27 25 23 30 30 H 1.48499 * 109.47089 * 329.99735 * 27 25 23 31 31 H 1.09005 * 109.46904 * 299.91811 * 1 2 3 32 32 H 1.08994 * 109.46936 * 59.92176 * 1 2 3 33 33 H 1.08994 * 109.47295 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.58720 * 54.79865 * 4 2 1 35 35 H 1.08996 * 109.58651 * 294.51761 * 4 2 1 36 36 H 1.09000 * 109.47171 * 299.99537 * 8 6 5 37 37 H 1.08993 * 109.47429 * 60.00485 * 8 6 5 38 38 H 1.08999 * 109.47240 * 299.99805 * 9 8 6 39 39 H 1.09003 * 109.47483 * 59.99982 * 9 8 6 40 40 H 1.09004 * 109.47236 * 299.99654 * 10 9 8 41 41 H 1.09000 * 109.47541 * 59.99685 * 10 9 8 42 42 H 1.09004 * 109.46737 * 300.00040 * 11 10 9 43 43 H 1.09000 * 109.46993 * 59.99429 * 11 10 9 44 44 H 1.08002 * 126.74570 * 359.94008 * 13 12 11 45 45 H 1.08994 * 109.58580 * 173.39910 * 18 5 4 46 46 H 1.09006 * 109.57831 * 293.67403 * 18 5 4 47 47 H 1.08994 * 109.49494 * 65.32533 * 19 18 5 48 48 H 1.09000 * 109.49460 * 185.41816 * 19 18 5 49 49 H 0.97007 * 119.99656 * 95.00201 * 22 20 19 50 50 H 0.97001 * 120.00000 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5047 -0.8290 1.1731 6 6 4.2790 -0.3843 2.1827 7 8 3.7687 0.1079 3.1667 8 6 5.7787 -0.4988 2.0890 9 6 6.4142 0.0747 3.3572 10 6 7.9368 -0.0409 3.2618 11 6 8.5724 0.5331 4.5296 12 6 10.0720 0.4187 4.4359 13 6 10.9180 1.2894 3.8373 14 7 12.1497 0.7924 3.9962 15 7 12.0717 -0.3130 4.6494 16 7 10.8443 -0.5727 4.9375 17 1 10.5274 -1.3471 5.4281 18 6 4.1083 -1.4277 -0.0253 19 6 3.5766 -0.6973 -1.2625 20 6 2.0466 -0.7256 -1.2483 21 1 1.6659 -0.2277 -2.1401 22 7 1.5842 -2.1156 -1.2305 23 6 1.4555 -2.8095 -2.4039 24 1 1.6945 -2.3320 -3.3426 25 6 1.0179 -4.1267 -2.3868 26 7 0.8937 -4.7936 -3.5148 27 14 0.6053 -4.9529 -0.7632 28 1 -0.8288 -4.7333 -0.4464 29 1 0.8716 -6.4102 -0.8675 30 1 1.4450 -4.3723 0.3152 31 1 -0.3633 0.5126 0.8908 32 1 -0.3633 0.5150 -0.8892 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6053 -1.7216 1.2981 35 1 1.7616 -0.1592 2.1390 36 1 6.0573 -1.5475 1.9858 37 1 6.1321 0.0582 1.2213 38 1 6.1356 1.1234 3.4609 39 1 6.0608 -0.4826 4.2247 40 1 8.2158 -1.0895 3.1579 41 1 8.2900 0.5166 2.3943 42 1 8.2933 1.5818 4.6330 43 1 8.2193 -0.0241 5.3973 44 1 10.6509 2.2050 3.3305 45 1 5.1924 -1.3254 0.0216 46 1 3.8429 -2.4836 -0.0794 47 1 3.9216 0.3365 -1.2508 48 1 3.9413 -1.1929 -2.1622 49 1 1.3692 -2.5445 -0.3873 50 1 0.5876 -5.7139 -3.5030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753759940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:22 Heat of formation + Delta-G solvation = 28.418844 kcal Electronic energy + Delta-G solvation = -28859.967407 eV Core-core repulsion = 24922.871852 eV Total energy + Delta-G solvation = -3937.095555 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.25481 -41.35444 -39.26173 -36.80851 -35.91343 -34.58564 -34.30984 -33.36195 -33.01536 -31.43493 -30.20894 -27.80988 -26.79703 -25.40914 -24.89255 -23.96132 -23.02552 -22.82452 -21.98942 -20.74673 -19.85867 -19.47771 -19.09286 -18.00358 -17.04651 -17.02246 -16.84844 -16.58413 -16.13368 -15.75447 -15.43764 -15.41950 -15.20211 -15.05013 -14.78071 -14.47777 -14.43073 -13.77016 -13.67561 -13.46314 -13.29744 -13.13874 -12.99415 -12.91730 -12.69639 -12.51682 -12.44236 -12.17348 -12.12753 -12.03074 -11.94219 -11.89369 -11.78445 -11.66833 -11.57730 -11.39873 -11.18154 -10.96154 -10.71509 -10.09124 -9.60290 -9.22921 -7.98423 -5.29001 0.60892 1.35114 1.37654 1.44393 1.56464 1.68200 1.91535 2.07249 2.48645 3.33699 3.44847 3.62264 3.62944 3.77505 3.85886 3.96361 4.00841 4.04490 4.05517 4.19354 4.28609 4.36205 4.40529 4.46341 4.54453 4.59238 4.62620 4.68647 4.71619 4.81009 4.82409 4.89497 4.98721 5.00687 5.01976 5.13087 5.14796 5.20365 5.24522 5.27893 5.31050 5.39870 5.43828 5.52220 5.65198 5.84501 6.01524 6.25819 6.50756 7.12590 7.21155 7.45554 7.89858 8.07810 9.23458 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016664 B = 0.002126 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.857044 B =13169.048603 C =13822.713705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 H 0.090 0.910 4 C 0.118 3.882 5 N -0.608 5.608 6 C 0.508 3.492 7 O -0.586 6.586 8 C -0.137 4.137 9 C -0.096 4.096 10 C -0.108 4.108 11 C -0.044 4.044 12 C 0.012 3.988 13 C -0.062 4.062 14 N -0.306 5.306 15 N -0.120 5.120 16 N -0.378 5.378 17 H 0.461 0.539 18 C 0.116 3.884 19 C -0.143 4.143 20 C 0.174 3.826 21 H 0.048 0.952 22 N -0.742 5.742 23 C -0.210 4.210 24 H 0.062 0.938 25 C -0.062 4.062 26 N -0.984 5.984 27 Si 0.941 3.059 28 H -0.284 1.284 29 H -0.301 1.301 30 H -0.257 1.257 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.212 0.788 45 H 0.113 0.887 46 H 0.052 0.948 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.362 0.638 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.001 12.990 17.333 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 H 0.109 0.891 4 C -0.005 4.005 5 N -0.340 5.340 6 C 0.299 3.701 7 O -0.467 6.467 8 C -0.177 4.177 9 C -0.134 4.134 10 C -0.146 4.146 11 C -0.083 4.083 12 C -0.124 4.124 13 C -0.220 4.220 14 N -0.173 5.173 15 N -0.100 5.100 16 N -0.101 5.101 17 H 0.309 0.691 18 C -0.006 4.006 19 C -0.183 4.183 20 C 0.066 3.934 21 H 0.066 0.934 22 N -0.386 5.386 23 C -0.342 4.342 24 H 0.080 0.920 25 C -0.253 4.253 26 N -0.636 5.636 27 Si 0.770 3.230 28 H -0.211 1.211 29 H -0.228 1.228 30 H -0.181 1.181 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.129 0.871 43 H 0.112 0.888 44 H 0.229 0.771 45 H 0.131 0.869 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.196 0.804 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.309 12.832 17.683 26.678 hybrid contribution -1.942 -1.406 0.479 2.445 sum 13.367 11.426 18.162 25.280 Atomic orbital electron populations 1.21656 0.94096 1.01586 1.02137 1.21705 0.96561 0.99690 0.93973 0.89130 1.21504 0.80184 0.99906 0.98936 1.48263 1.06591 1.60176 1.18956 1.21429 0.91137 0.76223 0.81319 1.90644 1.76622 1.46952 1.32531 1.21792 0.88680 1.04959 1.02230 1.21254 0.94242 1.01836 0.96054 1.21542 0.93560 1.01831 0.97673 1.20277 0.83050 1.05164 0.99851 1.22682 0.97501 0.90755 1.01424 1.23968 0.87961 1.03997 1.06037 1.75059 1.24431 1.03795 1.13971 1.78250 1.01551 1.13245 1.16940 1.45210 1.05286 1.20855 1.38780 0.69063 1.21722 0.98922 0.96744 0.83189 1.22358 0.97642 1.00752 0.97585 1.20505 0.92765 0.83936 0.96176 0.93419 1.42803 1.80814 1.10791 1.04189 1.18999 1.34425 0.93836 0.86903 0.92037 1.25315 1.03151 0.97791 0.99041 1.69859 1.55819 1.11055 1.26852 0.85627 0.78392 0.77566 0.81407 1.21075 1.22784 1.18144 0.91309 0.92187 0.94035 0.93472 0.89533 0.87626 0.86635 0.91377 0.92097 0.91511 0.90335 0.87121 0.88802 0.77084 0.86937 0.92974 0.90042 0.91778 0.80433 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.07 71.98 0.65 -3.07 16 2 C -0.10 -2.71 2.68 -10.61 -0.03 -2.74 16 3 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 4 C 0.12 3.33 5.41 86.36 0.47 3.80 16 5 N -0.61 -15.46 2.97 -818.90 -2.44 -17.90 16 6 C 0.51 12.02 7.70 87.66 0.67 12.69 16 7 O -0.59 -17.75 15.39 -3.04 -0.05 -17.79 16 8 C -0.14 -1.89 4.05 29.85 0.12 -1.77 16 9 C -0.10 -1.07 4.50 30.60 0.14 -0.93 16 10 C -0.11 -0.68 5.20 30.59 0.16 -0.52 16 11 C -0.04 -0.20 5.78 29.84 0.17 -0.03 16 12 C 0.01 0.11 6.56 41.35 0.27 0.38 16 13 C -0.06 -0.85 11.99 83.73 1.00 0.15 16 14 N -0.31 -6.56 12.41 -58.25 -0.72 -7.28 16 15 N -0.12 -2.36 13.38 37.02 0.50 -1.87 16 16 N -0.38 -4.23 6.98 -47.79 -0.33 -4.56 16 17 H 0.46 1.79 8.96 -219.96 -1.97 -0.18 16 18 C 0.12 2.86 6.08 86.36 0.53 3.38 16 19 C -0.14 -3.87 5.78 30.67 0.18 -3.70 16 20 C 0.17 5.71 2.54 45.12 0.11 5.82 16 21 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 22 N -0.74 -30.83 3.46 -322.34 -1.11 -31.95 16 23 C -0.21 -11.03 10.41 84.03 0.87 -10.15 16 24 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 25 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 26 N -0.98 -61.07 13.97 21.65 0.30 -60.77 16 27 Si 0.94 44.14 27.73 68.60 1.90 46.05 16 28 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 29 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 30 H -0.26 -10.88 6.52 99.48 0.65 -10.23 16 31 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.31 7.55 -2.39 -0.02 1.29 16 34 H 0.05 1.50 6.64 -2.39 -0.02 1.48 16 35 H 0.09 2.46 7.00 -2.39 -0.02 2.45 16 36 H 0.11 1.23 7.94 -2.39 -0.02 1.21 16 37 H 0.12 1.16 7.69 -2.39 -0.02 1.14 16 38 H 0.07 0.87 8.10 -2.39 -0.02 0.85 16 39 H 0.06 0.82 8.10 -2.39 -0.02 0.80 16 40 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 41 H 0.08 0.45 8.14 -2.39 -0.02 0.44 16 42 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 43 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 45 H 0.11 1.90 5.93 -2.39 -0.01 1.88 16 46 H 0.05 1.59 7.75 -2.38 -0.02 1.57 16 47 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.36 14.99 3.79 -92.70 -0.35 14.64 16 50 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -75.99 395.53 2.41 -73.59 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -1.43 Total: 22.17 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 5.79 Total: 0.31 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -3.81 Total: -124.32 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.05 Total: -17.79 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.90 Total: 46.05 kcal Total: -75.99 2.41 -73.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753759940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.004 kcal (2) G-P(sol) polarization free energy of solvation -75.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds