Wall clock time and date at job start Wed Apr 1 2020 00:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34784 * 120.62853 * 233.58870 * 5 4 2 7 7 O 1.21279 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99582 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46998 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47111 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47111 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47158 * 179.97438 * 11 10 9 13 13 C 1.35344 * 126.91179 * 274.68338 * 12 11 10 14 14 N 1.33776 * 106.49306 * 179.90629 * 13 12 11 15 15 N 1.28626 * 108.88640 * 0.37041 * 14 13 12 16 16 N 1.28713 * 110.17848 * 359.76310 * 15 14 13 17 17 H 0.97006 * 125.87049 * 180.02562 * 16 15 14 18 18 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 19 19 C 1.53193 * 108.77550 * 306.39057 * 18 5 4 20 20 C 1.53040 * 109.31153 * 54.63854 * 19 18 5 21 21 H 1.08997 * 109.46043 * 178.61049 * 20 19 18 22 22 N 1.46505 * 109.46056 * 58.64998 * 20 19 18 23 23 C 1.36946 * 119.99484 * 84.93338 * 22 20 19 24 24 H 1.07997 * 120.00087 * 0.02562 * 23 22 20 25 25 C 1.38805 * 119.99308 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00858 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 119.99517 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47219 * 90.00310 * 27 25 23 29 29 H 1.48501 * 109.47017 * 210.00255 * 27 25 23 30 30 H 1.48499 * 109.47275 * 330.00242 * 27 25 23 31 31 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 33 33 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 34 34 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 35 35 H 1.09005 * 109.58454 * 65.59138 * 4 2 1 36 36 H 1.09001 * 109.47077 * 299.99541 * 8 6 5 37 37 H 1.08999 * 109.47395 * 60.00261 * 8 6 5 38 38 H 1.09007 * 109.46993 * 300.00268 * 9 8 6 39 39 H 1.09004 * 109.46672 * 59.99544 * 9 8 6 40 40 H 1.09001 * 109.47181 * 299.99870 * 10 9 8 41 41 H 1.08999 * 109.47177 * 60.00520 * 10 9 8 42 42 H 1.09007 * 109.46993 * 300.00465 * 11 10 9 43 43 H 1.09004 * 109.46672 * 59.99741 * 11 10 9 44 44 H 1.08003 * 126.75484 * 0.04135 * 13 12 11 45 45 H 1.09004 * 109.58885 * 66.17987 * 18 5 4 46 46 H 1.09000 * 109.58663 * 186.46129 * 18 5 4 47 47 H 1.09005 * 109.49580 * 174.58602 * 19 18 5 48 48 H 1.08994 * 109.49562 * 294.64929 * 19 18 5 49 49 H 0.96999 * 120.00270 * 264.93201 * 22 20 19 50 50 H 0.96993 * 120.00505 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3849 -2.1790 7 8 3.7723 0.1055 -3.1648 8 6 5.7803 -0.4999 -2.0825 9 6 6.4182 0.0719 -3.3503 10 6 7.9406 -0.0443 -3.2521 11 6 8.5785 0.5269 -4.5202 12 6 10.0780 0.4131 -4.4232 13 6 10.9230 1.2885 -3.8302 14 7 12.1548 0.7888 -3.9809 15 7 12.0782 -0.3184 -4.6313 16 7 10.8511 -0.5818 -4.9166 17 1 10.5347 -1.3600 -5.4017 18 6 4.1059 -1.4256 0.0300 19 6 3.5715 -0.6942 1.2655 20 6 2.0414 -0.7230 1.2482 21 1 1.6588 -0.2247 2.1389 22 7 1.5796 -2.1132 1.2305 23 6 1.4500 -2.8065 2.4044 24 1 1.6879 -2.3284 3.3430 25 6 1.0119 -4.1235 2.3877 26 7 0.7215 -4.7062 1.2438 27 14 0.8345 -5.0691 3.9889 28 1 -0.5372 -4.8805 4.5258 29 1 1.0744 -6.5133 3.7401 30 1 1.8251 -4.5652 4.9738 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.6057 -1.7214 -1.2982 35 1 1.7633 -0.1576 -2.1389 36 1 6.1324 0.0580 -1.2148 37 1 6.0583 -1.5486 -1.9776 38 1 6.0660 -0.4863 -4.2178 39 1 6.1401 1.1206 -3.4557 40 1 8.2924 0.5143 -2.3847 41 1 8.2189 -1.0928 -3.1466 42 1 8.2265 -0.0319 -5.3874 43 1 8.3001 1.5755 -4.6262 44 1 10.6553 2.2082 -3.3314 45 1 3.8386 -2.4808 0.0860 46 1 5.1903 -1.3252 -0.0159 47 1 3.9345 -1.1888 2.1664 48 1 3.9166 0.3396 1.2538 49 1 1.3656 -2.5425 0.3875 50 1 0.4150 -5.6264 1.2322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753759942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:31 Heat of formation + Delta-G solvation = 46.628822 kcal Electronic energy + Delta-G solvation = -28745.768825 eV Core-core repulsion = 24809.462914 eV Total energy + Delta-G solvation = -3936.305911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.66123 -40.10022 -37.89875 -36.20019 -34.30018 -33.73424 -33.04028 -32.47916 -31.42550 -29.53198 -29.19387 -26.66280 -25.41903 -24.35867 -23.50034 -23.32426 -22.19965 -21.69334 -21.45106 -19.48060 -18.57875 -18.12927 -17.41135 -16.82366 -16.38783 -16.20814 -15.67137 -15.15832 -14.87381 -14.71191 -14.47598 -14.35349 -14.00963 -13.67913 -13.55601 -13.30718 -12.94466 -12.70684 -12.52662 -12.39608 -12.24582 -11.98890 -11.67687 -11.61124 -11.43689 -11.32474 -11.21333 -11.16777 -10.95949 -10.94774 -10.87453 -10.82031 -10.52739 -10.48820 -10.22957 -9.87607 -9.61612 -9.58908 -9.46623 -8.97640 -8.24511 -7.02443 -5.83757 -3.12312 1.17092 2.19019 2.35691 2.81613 3.24788 3.37907 3.43784 3.45133 3.99278 4.23677 4.47828 4.51901 4.53189 4.62383 4.77235 4.97210 5.04445 5.10504 5.15810 5.18574 5.27532 5.32814 5.39431 5.44300 5.50254 5.52651 5.56617 5.61076 5.70182 5.76019 5.78280 5.90742 5.94444 6.03595 6.05699 6.08320 6.21702 6.28045 6.37625 6.43520 6.46799 6.60268 6.64682 6.72965 6.89475 6.97492 7.64126 7.71043 8.07745 8.34782 8.37815 9.46477 10.03099 10.38130 11.38570 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002044 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.916673 B =13696.238633 C =14723.709880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.118 3.882 5 N -0.602 5.602 6 C 0.511 3.489 7 O -0.557 6.557 8 C -0.140 4.140 9 C -0.102 4.102 10 C -0.116 4.116 11 C -0.050 4.050 12 C -0.003 4.003 13 C -0.050 4.050 14 N -0.266 5.266 15 N -0.086 5.086 16 N -0.391 5.391 17 H 0.447 0.553 18 C 0.113 3.887 19 C -0.150 4.150 20 C 0.178 3.822 21 H 0.050 0.950 22 N -0.719 5.719 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.191 0.809 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.048 0.952 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.355 10.912 -10.444 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.004 4.004 5 N -0.333 5.333 6 C 0.299 3.701 7 O -0.437 6.437 8 C -0.180 4.180 9 C -0.140 4.140 10 C -0.155 4.155 11 C -0.089 4.089 12 C -0.137 4.137 13 C -0.207 4.207 14 N -0.133 5.133 15 N -0.066 5.066 16 N -0.111 5.111 17 H 0.293 0.707 18 C -0.009 4.009 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.068 0.932 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.208 1.208 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.208 0.792 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.067 0.933 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.621 10.723 -10.818 21.114 hybrid contribution -1.480 -1.041 0.631 1.916 sum 13.141 9.682 -10.188 19.241 Atomic orbital electron populations 1.21669 0.94274 1.03176 1.00420 1.21695 0.96478 0.98794 0.95807 0.91709 1.21633 0.78811 1.01462 0.98506 1.48165 1.07163 1.59715 1.18304 1.20601 0.89386 0.77610 0.82506 1.90649 1.75738 1.45901 1.31370 1.21678 0.92400 1.03504 1.00384 1.21325 0.92872 1.02523 0.97307 1.21641 0.95384 1.01439 0.96988 1.20230 0.84831 1.04117 0.99735 1.22415 0.96828 0.91464 1.03039 1.23454 0.88636 1.02808 1.05765 1.75106 1.22475 1.02993 1.12776 1.78304 0.99994 1.12801 1.15497 1.45159 1.05986 1.20188 1.39811 0.70712 1.21734 0.96358 0.99030 0.83796 1.22519 1.00512 0.98596 0.97471 1.20216 0.90793 0.87367 0.94865 0.93156 1.42480 1.79001 1.07680 1.06936 1.19217 1.37234 0.93839 0.86582 0.91250 1.24706 1.02273 0.97210 0.96608 1.69643 1.51662 1.13096 1.23661 0.86238 0.77779 0.79364 0.83059 1.21818 1.21894 1.20847 0.91053 0.92822 0.93787 0.90776 0.89884 0.88959 0.89046 0.91057 0.90848 0.90968 0.91784 0.90123 0.88390 0.79225 0.89767 0.91182 0.90765 0.93330 0.78103 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.06 37.16 0.34 -1.82 16 2 C -0.11 -1.70 2.67 -90.50 -0.24 -1.95 16 3 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.93 5.42 -3.71 -0.02 1.91 16 5 N -0.60 -9.07 2.97 -172.77 -0.51 -9.58 16 6 C 0.51 7.28 7.70 -10.98 -0.08 7.20 16 7 O -0.56 -9.60 15.40 5.56 0.09 -9.51 16 8 C -0.14 -1.35 4.05 -27.88 -0.11 -1.46 16 9 C -0.10 -0.82 4.50 -26.73 -0.12 -0.94 16 10 C -0.12 -0.65 5.20 -26.73 -0.14 -0.79 16 11 C -0.05 -0.22 5.78 -27.88 -0.16 -0.38 16 12 C 0.00 -0.02 6.56 -82.09 -0.54 -0.56 16 13 C -0.05 -0.40 11.99 -17.74 -0.21 -0.61 16 14 N -0.27 -2.99 12.41 30.23 0.38 -2.61 16 15 N -0.09 -0.89 13.38 60.35 0.81 -0.08 16 16 N -0.39 -2.63 6.98 33.54 0.23 -2.39 16 17 H 0.45 1.43 8.96 -190.40 -1.71 -0.28 16 18 C 0.11 1.66 6.08 -3.71 -0.02 1.63 16 19 C -0.15 -2.32 5.78 -26.61 -0.15 -2.47 16 20 C 0.18 3.19 2.53 -67.89 -0.17 3.01 16 21 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 22 N -0.72 -16.01 3.64 -53.38 -0.19 -16.20 16 23 C -0.24 -6.05 9.93 -15.06 -0.15 -6.19 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -26.58 13.06 55.49 0.72 -25.85 16 27 Si 0.90 21.40 29.55 -169.99 -5.02 16.38 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 31 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.36 6.64 -51.93 -0.34 1.01 16 35 H 0.08 1.37 7.01 -51.93 -0.36 1.01 16 36 H 0.09 0.77 7.69 -51.93 -0.40 0.37 16 37 H 0.09 0.81 7.94 -51.93 -0.41 0.40 16 38 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 39 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.19 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.08 1.49 7.74 -51.93 -0.40 1.09 16 46 H 0.07 0.81 5.93 -51.93 -0.31 0.50 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.38 9.21 5.92 -40.82 -0.24 8.97 16 50 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 398.57 15.07 6.01 6.01 Total: -1.00 -32.52 398.57 -8.99 -41.51 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -9.60 Total: 6.18 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.89 Total: -3.84 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 1.43 Total: -56.72 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.52 -8.99 -41.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753759942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.136 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds