Wall clock time and date at job start Wed Apr 1 2020 00:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34784 * 120.62853 * 233.58870 * 5 4 2 7 7 O 1.21279 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99582 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46998 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47111 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47111 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47158 * 179.97438 * 11 10 9 13 13 C 1.35344 * 126.91179 * 274.68338 * 12 11 10 14 14 N 1.33776 * 106.49306 * 179.90629 * 13 12 11 15 15 N 1.28626 * 108.88640 * 0.37041 * 14 13 12 16 16 N 1.28713 * 110.17848 * 359.76310 * 15 14 13 17 17 H 0.97006 * 125.87049 * 180.02562 * 16 15 14 18 18 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 19 19 C 1.53193 * 108.77550 * 306.39057 * 18 5 4 20 20 C 1.53040 * 109.31153 * 54.63854 * 19 18 5 21 21 H 1.08997 * 109.46043 * 178.61049 * 20 19 18 22 22 N 1.46505 * 109.46056 * 58.64998 * 20 19 18 23 23 C 1.36946 * 119.99484 * 84.93338 * 22 20 19 24 24 H 1.07997 * 120.00087 * 0.02562 * 23 22 20 25 25 C 1.38805 * 119.99308 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00858 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 119.99517 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47219 * 90.00310 * 27 25 23 29 29 H 1.48501 * 109.47017 * 210.00255 * 27 25 23 30 30 H 1.48499 * 109.47275 * 330.00242 * 27 25 23 31 31 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 33 33 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 34 34 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 35 35 H 1.09005 * 109.58454 * 65.59138 * 4 2 1 36 36 H 1.09001 * 109.47077 * 299.99541 * 8 6 5 37 37 H 1.08999 * 109.47395 * 60.00261 * 8 6 5 38 38 H 1.09007 * 109.46993 * 300.00268 * 9 8 6 39 39 H 1.09004 * 109.46672 * 59.99544 * 9 8 6 40 40 H 1.09001 * 109.47181 * 299.99870 * 10 9 8 41 41 H 1.08999 * 109.47177 * 60.00520 * 10 9 8 42 42 H 1.09007 * 109.46993 * 300.00465 * 11 10 9 43 43 H 1.09004 * 109.46672 * 59.99741 * 11 10 9 44 44 H 1.08003 * 126.75484 * 0.04135 * 13 12 11 45 45 H 1.09004 * 109.58885 * 66.17987 * 18 5 4 46 46 H 1.09000 * 109.58663 * 186.46129 * 18 5 4 47 47 H 1.09005 * 109.49580 * 174.58602 * 19 18 5 48 48 H 1.08994 * 109.49562 * 294.64929 * 19 18 5 49 49 H 0.96999 * 120.00270 * 264.93201 * 22 20 19 50 50 H 0.96993 * 120.00505 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3849 -2.1790 7 8 3.7723 0.1055 -3.1648 8 6 5.7803 -0.4999 -2.0825 9 6 6.4182 0.0719 -3.3503 10 6 7.9406 -0.0443 -3.2521 11 6 8.5785 0.5269 -4.5202 12 6 10.0780 0.4131 -4.4232 13 6 10.9230 1.2885 -3.8302 14 7 12.1548 0.7888 -3.9809 15 7 12.0782 -0.3184 -4.6313 16 7 10.8511 -0.5818 -4.9166 17 1 10.5347 -1.3600 -5.4017 18 6 4.1059 -1.4256 0.0300 19 6 3.5715 -0.6942 1.2655 20 6 2.0414 -0.7230 1.2482 21 1 1.6588 -0.2247 2.1389 22 7 1.5796 -2.1132 1.2305 23 6 1.4500 -2.8065 2.4044 24 1 1.6879 -2.3284 3.3430 25 6 1.0119 -4.1235 2.3877 26 7 0.7215 -4.7062 1.2438 27 14 0.8345 -5.0691 3.9889 28 1 -0.5372 -4.8805 4.5258 29 1 1.0744 -6.5133 3.7401 30 1 1.8251 -4.5652 4.9738 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.6057 -1.7214 -1.2982 35 1 1.7633 -0.1576 -2.1389 36 1 6.1324 0.0580 -1.2148 37 1 6.0583 -1.5486 -1.9776 38 1 6.0660 -0.4863 -4.2178 39 1 6.1401 1.1206 -3.4557 40 1 8.2924 0.5143 -2.3847 41 1 8.2189 -1.0928 -3.1466 42 1 8.2265 -0.0319 -5.3874 43 1 8.3001 1.5755 -4.6262 44 1 10.6553 2.2082 -3.3314 45 1 3.8386 -2.4808 0.0860 46 1 5.1903 -1.3252 -0.0159 47 1 3.9345 -1.1888 2.1664 48 1 3.9166 0.3396 1.2538 49 1 1.3656 -2.5425 0.3875 50 1 0.4150 -5.6264 1.2322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753759942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:30 Heat of formation + Delta-G solvation = 25.856108 kcal Electronic energy + Delta-G solvation = -28746.669597 eV Core-core repulsion = 24809.462914 eV Total energy + Delta-G solvation = -3937.206683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.24957 -41.29848 -39.17532 -36.79331 -35.81479 -34.55031 -34.29291 -33.29387 -32.88368 -30.89155 -30.19165 -27.76055 -26.68824 -25.51042 -25.05305 -23.95079 -23.02745 -22.81326 -21.97882 -20.65828 -19.53414 -19.22766 -19.07177 -17.96887 -17.03144 -17.00427 -16.80534 -16.51459 -15.92565 -15.82726 -15.51827 -15.40681 -15.17414 -14.85909 -14.76345 -14.44736 -14.21663 -13.71694 -13.62101 -13.43033 -13.11595 -12.98007 -12.91749 -12.84391 -12.67111 -12.48174 -12.38227 -12.15859 -12.11996 -12.07516 -11.93083 -11.82943 -11.77489 -11.56957 -11.55855 -11.38870 -11.13254 -10.89188 -10.67854 -10.08421 -9.52914 -8.90652 -7.88073 -5.13898 0.61686 1.49645 1.50718 1.57172 1.58018 1.71149 1.92351 2.12027 2.60259 3.45394 3.47077 3.64737 3.79185 3.89540 3.91456 3.98679 4.05386 4.10369 4.13789 4.20458 4.33849 4.41685 4.43819 4.52171 4.56014 4.60601 4.69316 4.71181 4.74722 4.82949 4.87747 4.90870 5.00841 5.02139 5.07173 5.15761 5.16031 5.24567 5.27434 5.32239 5.35033 5.40758 5.49660 5.53369 5.61889 5.69697 6.02149 6.33997 6.56390 7.24435 7.41495 7.46261 8.18564 8.41593 9.35152 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002044 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.916673 B =13696.238633 C =14723.709880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.123 3.877 5 N -0.605 5.605 6 C 0.506 3.494 7 O -0.589 6.589 8 C -0.135 4.135 9 C -0.096 4.096 10 C -0.107 4.107 11 C -0.044 4.044 12 C 0.012 3.988 13 C -0.062 4.062 14 N -0.306 5.306 15 N -0.120 5.120 16 N -0.378 5.378 17 H 0.461 0.539 18 C 0.120 3.880 19 C -0.142 4.142 20 C 0.170 3.830 21 H 0.045 0.955 22 N -0.725 5.725 23 C -0.224 4.224 24 H 0.075 0.925 25 C -0.075 4.075 26 N -0.969 5.969 27 Si 0.962 3.038 28 H -0.295 1.295 29 H -0.302 1.302 30 H -0.269 1.269 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.213 0.787 45 H 0.048 0.952 46 H 0.110 0.890 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.373 0.627 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.613 12.612 -10.027 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.117 4.117 3 H 0.104 0.896 4 C 0.000 4.000 5 N -0.337 5.337 6 C 0.297 3.703 7 O -0.471 6.471 8 C -0.175 4.175 9 C -0.134 4.134 10 C -0.145 4.145 11 C -0.084 4.084 12 C -0.124 4.124 13 C -0.219 4.219 14 N -0.172 5.172 15 N -0.100 5.100 16 N -0.101 5.101 17 H 0.309 0.691 18 C -0.002 4.002 19 C -0.183 4.183 20 C 0.061 3.939 21 H 0.063 0.937 22 N -0.366 5.366 23 C -0.356 4.356 24 H 0.093 0.907 25 C -0.267 4.267 26 N -0.621 5.621 27 Si 0.793 3.207 28 H -0.222 1.222 29 H -0.229 1.229 30 H -0.194 1.194 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.129 0.871 44 H 0.229 0.771 45 H 0.066 0.934 46 H 0.128 0.872 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.206 0.794 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.925 12.451 -10.386 22.727 hybrid contribution -1.941 -1.469 0.457 2.476 sum 13.985 10.982 -9.930 20.366 Atomic orbital electron populations 1.21610 0.94389 1.01363 1.01691 1.21610 0.96359 0.99330 0.94395 0.89578 1.21427 0.80157 0.99794 0.98649 1.48239 1.06551 1.59962 1.18918 1.21460 0.91193 0.76320 0.81368 1.90635 1.76763 1.47245 1.32432 1.21778 0.88602 1.04862 1.02249 1.21255 0.94300 1.01819 0.96009 1.21538 0.93453 1.01843 0.97709 1.20279 0.83088 1.05180 0.99808 1.22672 0.97470 0.90570 1.01648 1.23964 0.87982 1.03908 1.06088 1.75057 1.24400 1.03804 1.13970 1.78241 1.01560 1.13266 1.16890 1.45210 1.05265 1.20603 1.39053 0.69061 1.21670 0.98557 0.96735 0.83269 1.22386 0.98004 1.00397 0.97499 1.20470 0.92678 0.85062 0.95669 0.93671 1.42596 1.79149 1.09293 1.05538 1.19567 1.34532 0.93772 0.87736 0.90673 1.25378 1.03743 0.98506 0.99041 1.69797 1.53958 1.12855 1.25451 0.85293 0.77565 0.77557 0.80255 1.22229 1.22927 1.19425 0.94322 0.92266 0.91801 0.93692 0.90116 0.86603 0.87786 0.92201 0.91355 0.90261 0.91538 0.88834 0.87100 0.77058 0.93359 0.87177 0.91572 0.90358 0.79360 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.06 71.98 0.65 -3.44 16 2 C -0.10 -2.95 2.67 -10.72 -0.03 -2.98 16 3 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.12 3.99 5.42 86.36 0.47 4.46 16 5 N -0.61 -17.32 2.97 -818.91 -2.43 -19.76 16 6 C 0.51 13.38 7.70 87.65 0.67 14.05 16 7 O -0.59 -19.54 15.40 -3.03 -0.05 -19.59 16 8 C -0.14 -2.15 4.05 29.85 0.12 -2.03 16 9 C -0.10 -1.23 4.50 30.59 0.14 -1.09 16 10 C -0.11 -0.80 5.20 30.59 0.16 -0.64 16 11 C -0.04 -0.25 5.78 29.85 0.17 -0.08 16 12 C 0.01 0.12 6.56 41.35 0.27 0.39 16 13 C -0.06 -0.88 11.99 83.73 1.00 0.12 16 14 N -0.31 -6.68 12.41 -58.26 -0.72 -7.40 16 15 N -0.12 -2.42 13.38 37.02 0.50 -1.92 16 16 N -0.38 -4.47 6.98 -47.79 -0.33 -4.81 16 17 H 0.46 2.13 8.96 -219.95 -1.97 0.16 16 18 C 0.12 3.27 6.08 86.36 0.53 3.79 16 19 C -0.14 -4.05 5.78 30.67 0.18 -3.88 16 20 C 0.17 5.89 2.53 45.02 0.11 6.01 16 21 H 0.05 1.62 8.08 -2.39 -0.02 1.60 16 22 N -0.72 -32.60 3.64 -322.81 -1.18 -33.77 16 23 C -0.22 -11.41 9.93 84.03 0.83 -10.58 16 24 H 0.08 3.69 7.83 -2.91 -0.02 3.66 16 25 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 26 N -0.97 -56.89 13.06 21.65 0.28 -56.61 16 27 Si 0.96 44.47 29.55 68.60 2.03 46.50 16 28 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 29 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 30 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 31 H 0.04 1.44 7.54 -2.39 -0.02 1.42 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.72 6.64 -2.39 -0.02 1.70 16 35 H 0.08 2.65 7.01 -2.38 -0.02 2.63 16 36 H 0.12 1.36 7.69 -2.39 -0.02 1.34 16 37 H 0.10 1.45 7.94 -2.39 -0.02 1.44 16 38 H 0.06 0.92 8.10 -2.38 -0.02 0.90 16 39 H 0.07 0.98 8.10 -2.38 -0.02 0.96 16 40 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 43 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 44 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 45 H 0.05 1.69 7.74 -2.38 -0.02 1.67 16 46 H 0.11 2.11 5.93 -2.39 -0.01 2.10 16 47 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 48 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.37 18.52 5.92 -92.71 -0.55 17.97 16 50 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -72.68 398.57 2.27 -70.41 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -1.57 Total: 26.45 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 5.75 Total: 0.51 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -3.89 Total: -124.27 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.05 Total: -19.59 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -72.68 2.27 -70.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753759942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.262 kcal (2) G-P(sol) polarization free energy of solvation -72.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds