Wall clock time and date at job start Wed Apr 1 2020 00:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34775 * 120.62902 * 233.63095 * 5 4 2 7 7 O 1.21285 * 120.00383 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00081 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47076 * 179.97438 * 8 6 5 10 10 C 1.53007 * 109.46840 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.46876 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46661 * 179.97438 * 11 10 9 13 13 C 1.35349 * 126.91113 * 274.68071 * 12 11 10 14 14 N 1.33776 * 106.49551 * 179.91022 * 13 12 11 15 15 N 1.28634 * 108.88479 * 0.36507 * 14 13 12 16 16 N 1.28715 * 110.17751 * 359.76804 * 15 14 13 17 17 H 0.97001 * 125.86583 * 180.02562 * 16 15 14 18 18 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 19 19 C 1.53193 * 108.77550 * 306.39057 * 18 5 4 20 20 C 1.53040 * 109.31153 * 54.63854 * 19 18 5 21 21 H 1.09004 * 109.46170 * 58.65203 * 20 19 18 22 22 N 1.46502 * 109.45822 * 178.61249 * 20 19 18 23 23 C 1.36935 * 120.00003 * 275.06158 * 22 20 19 24 24 H 1.08007 * 119.99949 * 0.02562 * 23 22 20 25 25 C 1.38810 * 119.99988 * 179.97438 * 23 22 20 26 26 N 1.31614 * 119.99831 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 119.99827 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47575 * 89.99416 * 27 25 23 29 29 H 1.48507 * 109.46942 * 209.99345 * 27 25 23 30 30 H 1.48498 * 109.47378 * 329.99090 * 27 25 23 31 31 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 33 33 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 34 34 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 35 35 H 1.09005 * 109.58454 * 65.59138 * 4 2 1 36 36 H 1.08994 * 109.46897 * 300.00133 * 8 6 5 37 37 H 1.09002 * 109.46800 * 59.99803 * 8 6 5 38 38 H 1.08994 * 109.47425 * 299.99881 * 9 8 6 39 39 H 1.09002 * 109.47408 * 60.00247 * 9 8 6 40 40 H 1.09006 * 109.46565 * 299.99839 * 10 9 8 41 41 H 1.08994 * 109.47338 * 59.99830 * 10 9 8 42 42 H 1.09000 * 109.46745 * 299.99366 * 11 10 9 43 43 H 1.08996 * 109.47045 * 59.99686 * 11 10 9 44 44 H 1.07997 * 126.75355 * 0.03813 * 13 12 11 45 45 H 1.09004 * 109.58885 * 66.17987 * 18 5 4 46 46 H 1.09002 * 109.58368 * 186.60251 * 18 5 4 47 47 H 1.09005 * 109.49580 * 174.58602 * 19 18 5 48 48 H 1.08994 * 109.49562 * 294.64929 * 19 18 5 49 49 H 0.97005 * 119.99748 * 95.07143 * 22 20 19 50 50 H 0.97009 * 119.99833 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3842 -2.1786 7 8 3.7724 0.1070 -3.1641 8 6 5.7804 -0.4981 -2.0817 9 6 6.4182 0.0744 -3.3491 10 6 7.9407 -0.0418 -3.2510 11 6 8.5786 0.5313 -4.5181 12 6 10.0782 0.4174 -4.4212 13 6 10.9231 1.2919 -3.8269 14 7 12.1549 0.7925 -3.9782 15 7 12.0785 -0.3137 -4.6301 16 7 10.8513 -0.5768 -4.9159 17 1 10.5351 -1.3543 -5.4021 18 6 4.1059 -1.4256 0.0300 19 6 3.5715 -0.6942 1.2655 20 6 2.0414 -0.7230 1.2482 21 1 1.6978 -1.7573 1.2351 22 7 1.5272 -0.0532 2.4453 23 6 1.3976 -0.7496 3.6172 24 1 1.6749 -1.7927 3.6590 25 6 0.9108 -0.1149 4.7516 26 7 0.7867 -0.7842 5.8781 27 14 0.4319 1.6892 4.6794 28 1 -0.9996 1.8067 4.3022 29 1 0.6457 2.3117 6.0107 30 1 1.2689 2.3835 3.6682 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.6057 -1.7214 -1.2982 35 1 1.7633 -0.1576 -2.1389 36 1 6.1318 0.0598 -1.2138 37 1 6.0591 -1.5466 -1.9769 38 1 6.0668 -0.4838 -4.2168 39 1 6.1396 1.1230 -3.4544 40 1 8.2925 0.5162 -2.3832 41 1 8.2191 -1.0904 -3.1459 42 1 8.2269 -0.0264 -5.3861 43 1 8.3002 1.5799 -4.6227 44 1 10.6553 2.2109 -3.3268 45 1 3.8386 -2.4808 0.0860 46 1 5.1902 -1.3230 -0.0148 47 1 3.9345 -1.1888 2.1664 48 1 3.9166 0.3396 1.2538 49 1 1.2783 0.8837 2.4078 50 1 0.4462 -0.3407 6.6708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753759943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:35 Heat of formation + Delta-G solvation = 48.550552 kcal Electronic energy + Delta-G solvation = -28404.036813 eV Core-core repulsion = 24467.814235 eV Total energy + Delta-G solvation = -3936.222578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.71370 -40.28531 -37.98652 -36.31327 -34.79742 -33.80552 -33.16592 -32.54778 -31.60586 -29.96638 -29.54412 -26.86917 -25.58312 -24.57838 -23.38938 -22.66538 -22.25209 -21.67090 -21.48886 -20.03791 -19.01901 -18.57558 -17.60156 -17.05785 -16.46633 -16.33364 -15.90989 -15.23177 -15.00380 -14.93404 -14.61324 -14.42821 -13.98967 -13.79069 -13.66885 -13.40257 -13.07764 -12.78723 -12.56119 -12.49503 -12.44874 -12.08016 -11.95678 -11.80430 -11.74052 -11.57401 -11.42123 -11.25135 -11.09173 -11.02762 -10.96811 -10.94161 -10.74968 -10.58114 -10.28387 -9.84639 -9.78876 -9.63632 -9.55987 -8.98274 -8.58867 -7.33110 -5.83119 -3.18714 1.11346 2.14163 2.29690 2.59040 2.98745 3.32508 3.35600 3.41197 3.91390 4.16560 4.36439 4.41627 4.47528 4.53402 4.67404 4.87526 4.89359 4.97164 4.99449 5.03564 5.07796 5.11040 5.19402 5.26251 5.32816 5.40310 5.42228 5.50292 5.51379 5.55732 5.64646 5.71132 5.79338 5.82699 5.91226 5.95999 5.98254 6.05811 6.22707 6.23280 6.35483 6.37816 6.45711 6.62286 6.72248 6.88396 7.41993 7.92150 8.02628 8.14327 8.35939 9.14060 9.86935 10.06759 11.35066 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.001923 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.073367 B =14554.791149 C =15444.710005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.120 3.880 5 N -0.608 5.608 6 C 0.513 3.487 7 O -0.552 6.552 8 C -0.141 4.141 9 C -0.103 4.103 10 C -0.116 4.116 11 C -0.049 4.049 12 C -0.005 4.005 13 C -0.048 4.048 14 N -0.266 5.266 15 N -0.085 5.085 16 N -0.391 5.391 17 H 0.447 0.553 18 C 0.107 3.893 19 C -0.153 4.153 20 C 0.188 3.812 21 H 0.057 0.943 22 N -0.745 5.745 23 C -0.243 4.243 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.882 3.118 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.191 0.809 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.058 0.942 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.500 -0.187 -22.440 26.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.086 0.914 4 C -0.003 4.003 5 N -0.341 5.341 6 C 0.301 3.699 7 O -0.430 6.430 8 C -0.181 4.181 9 C -0.141 4.141 10 C -0.155 4.155 11 C -0.089 4.089 12 C -0.139 4.139 13 C -0.205 4.205 14 N -0.133 5.133 15 N -0.066 5.066 16 N -0.112 5.112 17 H 0.292 0.708 18 C -0.017 4.017 19 C -0.194 4.194 20 C 0.079 3.921 21 H 0.075 0.925 22 N -0.387 5.387 23 C -0.373 4.373 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.580 5.580 27 Si 0.713 3.287 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.208 0.792 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.194 0.806 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.762 -0.472 -22.789 27.156 hybrid contribution -1.634 1.095 0.169 1.975 sum 13.128 0.623 -22.619 26.160 Atomic orbital electron populations 1.21669 0.94155 1.02162 1.01541 1.21785 0.96569 1.00025 0.94978 0.91382 1.21668 0.78752 1.00826 0.99023 1.48216 1.07158 1.60370 1.18323 1.20655 0.89477 0.77361 0.82366 1.90668 1.75733 1.45279 1.31364 1.21698 0.92118 1.03516 1.00730 1.21332 0.93018 1.02634 0.97108 1.21643 0.95257 1.01420 0.97157 1.20218 0.84886 1.04146 0.99630 1.22399 0.96791 0.91553 1.03140 1.23471 0.88625 1.02800 1.05642 1.75119 1.22462 1.02977 1.12708 1.78312 0.99960 1.12833 1.15453 1.45153 1.06000 1.20223 1.39795 0.70761 1.21881 0.97726 0.97496 0.84565 1.22655 0.99955 1.00444 0.96325 1.20169 0.90507 0.96046 0.85424 0.92517 1.42776 1.78181 1.10116 1.07611 1.19042 1.36449 0.95713 0.86087 0.89212 1.24661 1.01333 0.97415 0.95623 1.69696 1.51989 1.35718 1.00631 0.86591 0.78589 0.86743 0.76814 1.21067 1.21778 1.20396 0.92537 0.91473 0.93549 0.91496 0.89345 0.88687 0.89015 0.91078 0.90749 0.90874 0.91792 0.90158 0.88363 0.79196 0.91265 0.90274 0.90061 0.92285 0.80628 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.03 37.16 0.34 -1.66 16 2 C -0.11 -1.68 2.46 -90.50 -0.22 -1.90 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.12 1.56 5.72 -3.71 -0.02 1.54 16 5 N -0.61 -7.41 2.97 -172.77 -0.51 -7.92 16 6 C 0.51 6.15 7.70 -10.98 -0.08 6.07 16 7 O -0.55 -8.38 15.40 5.55 0.09 -8.29 16 8 C -0.14 -1.09 4.05 -27.88 -0.11 -1.21 16 9 C -0.10 -0.68 4.50 -26.73 -0.12 -0.80 16 10 C -0.12 -0.52 5.20 -26.73 -0.14 -0.66 16 11 C -0.05 -0.18 5.78 -27.88 -0.16 -0.34 16 12 C 0.00 -0.03 6.56 -82.09 -0.54 -0.57 16 13 C -0.05 -0.37 11.99 -17.73 -0.21 -0.58 16 14 N -0.27 -2.86 12.41 30.23 0.38 -2.49 16 15 N -0.09 -0.83 13.38 60.35 0.81 -0.03 16 16 N -0.39 -2.33 6.98 33.54 0.23 -2.10 16 17 H 0.45 1.02 8.96 -190.40 -1.71 -0.68 16 18 C 0.11 1.18 6.34 -3.71 -0.02 1.16 16 19 C -0.15 -2.28 5.66 -26.61 -0.15 -2.43 16 20 C 0.19 3.25 2.19 -67.89 -0.15 3.10 16 21 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 22 N -0.75 -16.30 4.22 -53.38 -0.23 -16.52 16 23 C -0.24 -6.44 10.41 -15.06 -0.16 -6.60 16 24 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 26 N -0.93 -28.40 13.97 55.49 0.78 -27.62 16 27 Si 0.88 21.47 27.73 -169.99 -4.71 16.76 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.11 7.36 -51.93 -0.38 0.73 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.21 7.01 -51.93 -0.36 0.85 16 36 H 0.09 0.67 7.69 -51.93 -0.40 0.27 16 37 H 0.09 0.57 7.94 -51.93 -0.41 0.16 16 38 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.19 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 47 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.36 7.96 5.36 -40.82 -0.22 7.74 16 50 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 399.40 15.07 6.02 6.02 Total: -1.00 -34.77 399.40 -8.73 -43.49 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -9.72 Total: 3.50 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.85 Total: -4.80 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 1.45 Total: -56.68 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.76 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.77 -8.73 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753759943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.044 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds