Wall clock time and date at job start Wed Apr 1 2020 00:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34775 * 120.62902 * 233.63095 * 5 4 2 7 7 O 1.21285 * 120.00383 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00081 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47076 * 179.97438 * 8 6 5 10 10 C 1.53007 * 109.46840 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.46876 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46661 * 179.97438 * 11 10 9 13 13 C 1.35349 * 126.91113 * 274.68071 * 12 11 10 14 14 N 1.33776 * 106.49551 * 179.91022 * 13 12 11 15 15 N 1.28634 * 108.88479 * 0.36507 * 14 13 12 16 16 N 1.28715 * 110.17751 * 359.76804 * 15 14 13 17 17 H 0.97001 * 125.86583 * 180.02562 * 16 15 14 18 18 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 19 19 C 1.53193 * 108.77550 * 306.39057 * 18 5 4 20 20 C 1.53040 * 109.31153 * 54.63854 * 19 18 5 21 21 H 1.09004 * 109.46170 * 58.65203 * 20 19 18 22 22 N 1.46502 * 109.45822 * 178.61249 * 20 19 18 23 23 C 1.36935 * 120.00003 * 275.06158 * 22 20 19 24 24 H 1.08007 * 119.99949 * 0.02562 * 23 22 20 25 25 C 1.38810 * 119.99988 * 179.97438 * 23 22 20 26 26 N 1.31614 * 119.99831 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 119.99827 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47575 * 89.99416 * 27 25 23 29 29 H 1.48507 * 109.46942 * 209.99345 * 27 25 23 30 30 H 1.48498 * 109.47378 * 329.99090 * 27 25 23 31 31 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 33 33 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 34 34 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 35 35 H 1.09005 * 109.58454 * 65.59138 * 4 2 1 36 36 H 1.08994 * 109.46897 * 300.00133 * 8 6 5 37 37 H 1.09002 * 109.46800 * 59.99803 * 8 6 5 38 38 H 1.08994 * 109.47425 * 299.99881 * 9 8 6 39 39 H 1.09002 * 109.47408 * 60.00247 * 9 8 6 40 40 H 1.09006 * 109.46565 * 299.99839 * 10 9 8 41 41 H 1.08994 * 109.47338 * 59.99830 * 10 9 8 42 42 H 1.09000 * 109.46745 * 299.99366 * 11 10 9 43 43 H 1.08996 * 109.47045 * 59.99686 * 11 10 9 44 44 H 1.07997 * 126.75355 * 0.03813 * 13 12 11 45 45 H 1.09004 * 109.58885 * 66.17987 * 18 5 4 46 46 H 1.09002 * 109.58368 * 186.60251 * 18 5 4 47 47 H 1.09005 * 109.49580 * 174.58602 * 19 18 5 48 48 H 1.08994 * 109.49562 * 294.64929 * 19 18 5 49 49 H 0.97005 * 119.99748 * 95.07143 * 22 20 19 50 50 H 0.97009 * 119.99833 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3842 -2.1786 7 8 3.7724 0.1070 -3.1641 8 6 5.7804 -0.4981 -2.0817 9 6 6.4182 0.0744 -3.3491 10 6 7.9407 -0.0418 -3.2510 11 6 8.5786 0.5313 -4.5181 12 6 10.0782 0.4174 -4.4212 13 6 10.9231 1.2919 -3.8269 14 7 12.1549 0.7925 -3.9782 15 7 12.0785 -0.3137 -4.6301 16 7 10.8513 -0.5768 -4.9159 17 1 10.5351 -1.3543 -5.4021 18 6 4.1059 -1.4256 0.0300 19 6 3.5715 -0.6942 1.2655 20 6 2.0414 -0.7230 1.2482 21 1 1.6978 -1.7573 1.2351 22 7 1.5272 -0.0532 2.4453 23 6 1.3976 -0.7496 3.6172 24 1 1.6749 -1.7927 3.6590 25 6 0.9108 -0.1149 4.7516 26 7 0.7867 -0.7842 5.8781 27 14 0.4319 1.6892 4.6794 28 1 -0.9996 1.8067 4.3022 29 1 0.6457 2.3117 6.0107 30 1 1.2689 2.3835 3.6682 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.6057 -1.7214 -1.2982 35 1 1.7633 -0.1576 -2.1389 36 1 6.1318 0.0598 -1.2138 37 1 6.0591 -1.5466 -1.9769 38 1 6.0668 -0.4838 -4.2168 39 1 6.1396 1.1230 -3.4544 40 1 8.2925 0.5162 -2.3832 41 1 8.2191 -1.0904 -3.1459 42 1 8.2269 -0.0264 -5.3861 43 1 8.3002 1.5799 -4.6227 44 1 10.6553 2.2109 -3.3268 45 1 3.8386 -2.4808 0.0860 46 1 5.1902 -1.3230 -0.0148 47 1 3.9345 -1.1888 2.1664 48 1 3.9166 0.3396 1.2538 49 1 1.2783 0.8837 2.4078 50 1 0.4462 -0.3407 6.6708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753759943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:34 Heat of formation + Delta-G solvation = 24.942775 kcal Electronic energy + Delta-G solvation = -28405.060523 eV Core-core repulsion = 24467.814235 eV Total energy + Delta-G solvation = -3937.246289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.25473 -41.27865 -39.15280 -36.81466 -36.22647 -34.57229 -34.30558 -33.40621 -33.02880 -31.47906 -30.18476 -27.81400 -26.84766 -25.51688 -24.08584 -23.93523 -23.03719 -22.76835 -21.99071 -21.33324 -20.05165 -19.37947 -19.09783 -18.01704 -17.04433 -16.97025 -16.84307 -16.70820 -16.03494 -15.87327 -15.41747 -15.24609 -15.17630 -14.95295 -14.80125 -14.49432 -14.33958 -13.81150 -13.63221 -13.42575 -13.39326 -13.12511 -12.95714 -12.93192 -12.80212 -12.52080 -12.41657 -12.18408 -12.11684 -12.07016 -11.93791 -11.86861 -11.78022 -11.75029 -11.57473 -11.39006 -11.16209 -10.95670 -10.71678 -10.09120 -9.62432 -9.26075 -7.99716 -5.31351 0.61129 1.38048 1.39668 1.46930 1.56053 1.69238 1.92039 2.08388 2.49366 3.31844 3.45118 3.55318 3.64035 3.77669 3.84192 3.96704 4.02596 4.04832 4.07736 4.20322 4.29347 4.38705 4.41422 4.47618 4.55049 4.60283 4.62949 4.68031 4.76336 4.79908 4.84134 4.86812 4.90331 4.98648 5.01614 5.02945 5.15128 5.18522 5.24113 5.29293 5.38151 5.40808 5.49655 5.53947 5.65182 5.80844 6.02893 6.24526 6.49497 7.10750 7.22753 7.45630 7.88047 8.05939 9.21743 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.001923 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.073367 B =14554.791149 C =15444.710005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 H 0.061 0.939 4 C 0.125 3.875 5 N -0.611 5.611 6 C 0.508 3.492 7 O -0.587 6.587 8 C -0.138 4.138 9 C -0.097 4.097 10 C -0.108 4.108 11 C -0.044 4.044 12 C 0.012 3.988 13 C -0.064 4.064 14 N -0.307 5.307 15 N -0.119 5.119 16 N -0.377 5.377 17 H 0.462 0.538 18 C 0.115 3.885 19 C -0.145 4.145 20 C 0.180 3.820 21 H 0.047 0.953 22 N -0.748 5.748 23 C -0.217 4.217 24 H 0.062 0.938 25 C -0.064 4.064 26 N -0.984 5.984 27 Si 0.947 3.053 28 H -0.281 1.281 29 H -0.300 1.300 30 H -0.256 1.256 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.210 0.790 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.063 0.937 48 H 0.055 0.945 49 H 0.362 0.638 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.124 0.258 -24.618 28.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 H 0.080 0.920 4 C 0.002 3.998 5 N -0.343 5.343 6 C 0.299 3.701 7 O -0.468 6.468 8 C -0.177 4.177 9 C -0.135 4.135 10 C -0.146 4.146 11 C -0.084 4.084 12 C -0.123 4.123 13 C -0.222 4.222 14 N -0.173 5.173 15 N -0.099 5.099 16 N -0.100 5.100 17 H 0.310 0.690 18 C -0.007 4.007 19 C -0.186 4.186 20 C 0.072 3.928 21 H 0.065 0.935 22 N -0.390 5.390 23 C -0.348 4.348 24 H 0.079 0.921 25 C -0.255 4.255 26 N -0.635 5.635 27 Si 0.776 3.224 28 H -0.208 1.208 29 H -0.227 1.227 30 H -0.180 1.180 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.227 0.773 45 H 0.098 0.902 46 H 0.132 0.868 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.195 0.805 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.430 -0.053 -25.042 29.414 hybrid contribution -1.882 0.873 0.763 2.211 sum 13.547 0.820 -24.279 27.815 Atomic orbital electron populations 1.21648 0.94013 1.02247 1.01483 1.21653 0.96691 0.99453 0.94460 0.92023 1.21537 0.79796 1.00984 0.97513 1.48304 1.06780 1.60479 1.18780 1.21418 0.91102 0.76098 0.81468 1.90656 1.76707 1.46693 1.32696 1.21797 0.88734 1.05351 1.01838 1.21258 0.94219 1.01667 0.96362 1.21545 0.93604 1.01994 0.97468 1.20282 0.83013 1.05073 1.00004 1.22665 0.97496 0.90561 1.01553 1.23949 0.88096 1.03937 1.06186 1.75068 1.24400 1.03867 1.13983 1.78242 1.01601 1.13231 1.16817 1.45189 1.05196 1.20623 1.38967 0.68961 1.21881 0.99505 0.97207 0.82143 1.22461 0.97704 1.00677 0.97774 1.20438 0.92185 0.95404 0.84749 0.93498 1.42801 1.78581 1.10060 1.07597 1.19003 1.33674 0.94659 0.87477 0.92051 1.25394 1.02814 1.01867 0.95459 1.69867 1.54518 1.37626 1.01480 0.85523 0.78521 0.81667 0.76711 1.20786 1.22715 1.18050 0.92417 0.93763 0.91325 0.90510 0.89714 0.87342 0.86652 0.91630 0.91971 0.90767 0.91028 0.88511 0.87458 0.77348 0.90201 0.86790 0.91818 0.92645 0.80521 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.03 71.98 0.65 -3.11 16 2 C -0.10 -2.86 2.46 -10.72 -0.03 -2.89 16 3 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.12 2.98 5.72 86.36 0.49 3.48 16 5 N -0.61 -13.14 2.97 -818.90 -2.43 -15.57 16 6 C 0.51 10.71 7.70 87.66 0.67 11.38 16 7 O -0.59 -16.61 15.40 -3.04 -0.05 -16.65 16 8 C -0.14 -1.60 4.05 29.85 0.12 -1.48 16 9 C -0.10 -0.95 4.50 30.60 0.14 -0.82 16 10 C -0.11 -0.56 5.20 30.60 0.16 -0.40 16 11 C -0.04 -0.17 5.78 29.85 0.17 0.00 16 12 C 0.01 0.11 6.56 41.35 0.27 0.39 16 13 C -0.06 -0.88 11.99 83.73 1.00 0.12 16 14 N -0.31 -6.50 12.41 -58.26 -0.72 -7.22 16 15 N -0.12 -2.26 13.38 37.02 0.50 -1.77 16 16 N -0.38 -3.82 6.98 -47.79 -0.33 -4.16 16 17 H 0.46 1.13 8.96 -219.96 -1.97 -0.84 16 18 C 0.12 2.19 6.34 86.36 0.55 2.74 16 19 C -0.15 -4.08 5.66 30.67 0.17 -3.91 16 20 C 0.18 6.03 2.19 45.02 0.10 6.13 16 21 H 0.05 1.67 8.08 -2.38 -0.02 1.65 16 22 N -0.75 -32.37 4.22 -322.80 -1.36 -33.73 16 23 C -0.22 -11.65 10.41 84.03 0.87 -10.78 16 24 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 25 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 26 N -0.98 -61.60 13.97 21.65 0.30 -61.30 16 27 Si 0.95 44.67 27.73 68.60 1.90 46.58 16 28 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 29 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 30 H -0.26 -10.95 6.52 99.48 0.65 -10.30 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.42 7.36 -2.39 -0.02 1.40 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 2.15 7.01 -2.38 -0.02 2.13 16 36 H 0.11 1.04 7.69 -2.39 -0.02 1.02 16 37 H 0.12 0.85 7.94 -2.39 -0.02 0.83 16 38 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 39 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 40 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 41 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 45 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.11 1.43 5.93 -2.39 -0.01 1.42 16 47 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 48 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.36 15.52 5.36 -92.70 -0.50 15.02 16 50 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -78.02 399.40 2.04 -75.98 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -1.58 Total: 20.18 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.82 Total: -2.34 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -4.05 Total: -123.74 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.05 Total: -16.65 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.58 kcal Total: -78.02 2.04 -75.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753759943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.920 kcal (2) G-P(sol) polarization free energy of solvation -78.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds