Wall clock time and date at job start Tue Mar 31 2020 18:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47282 * 2 1 4 4 N 1.46504 * 109.46862 * 119.99844 * 2 1 3 5 5 C 1.34807 * 126.59650 * 275.27084 * 4 2 1 6 6 C 1.36593 * 106.83810 * 180.15012 * 5 4 2 7 7 C 1.47535 * 125.76852 * 179.89622 * 6 5 4 8 8 O 1.21597 * 119.99942 * 359.71764 * 7 6 5 9 9 N 1.34774 * 119.99581 * 179.71781 * 7 6 5 10 10 C 1.46506 * 119.99465 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47378 * 324.99810 * 10 9 7 12 12 C 1.52995 * 109.47298 * 84.99859 * 10 9 7 13 13 C 1.53004 * 109.47027 * 204.99963 * 10 9 7 14 14 H 1.09001 * 109.49815 * 60.06308 * 13 10 9 15 15 C 1.53036 * 109.52225 * 180.14479 * 13 10 9 16 16 C 1.53045 * 109.53598 * 181.33322 * 15 13 10 17 17 C 1.53630 * 109.24023 * 298.51421 * 16 15 13 18 18 N 1.46921 * 108.54247 * 54.85343 * 17 16 15 19 19 C 1.36937 * 120.62612 * 126.37046 * 18 17 16 20 20 H 1.07998 * 120.00002 * 207.52827 * 19 18 17 21 21 C 1.38816 * 120.00353 * 27.52170 * 19 18 17 22 22 N 1.31623 * 119.99605 * 25.85418 * 21 19 18 23 23 Si 1.86798 * 120.00303 * 205.57558 * 21 19 18 24 24 H 1.48496 * 109.47254 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46775 * 120.00140 * 23 21 19 26 26 H 1.48502 * 109.47217 * 239.99955 * 23 21 19 27 27 C 1.46924 * 118.74129 * 306.09229 * 18 17 16 28 28 N 1.34391 * 108.46092 * 359.63819 * 6 5 4 29 29 N 1.28756 * 109.52404 * 0.22109 * 28 6 5 30 30 H 1.08995 * 109.47429 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47086 * 300.00199 * 1 2 3 32 32 H 1.09001 * 109.46724 * 60.00095 * 1 2 3 33 33 H 1.08999 * 109.47086 * 239.99801 * 2 1 3 34 34 H 1.08999 * 109.47288 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46786 * 300.00007 * 3 2 1 36 36 H 1.08999 * 109.47223 * 59.99885 * 3 2 1 37 37 H 1.08002 * 126.58089 * 0.02562 * 5 4 2 38 38 H 0.96990 * 120.00373 * 0.02562 * 9 7 6 39 39 H 1.08991 * 109.47550 * 179.97438 * 12 10 9 40 40 H 1.08998 * 109.47260 * 299.99941 * 12 10 9 41 41 H 1.09006 * 109.46566 * 59.99662 * 12 10 9 42 42 H 1.09000 * 109.46431 * 301.34923 * 15 13 10 43 43 H 1.08999 * 109.46106 * 61.31716 * 15 13 10 44 44 H 1.08999 * 109.49721 * 58.58669 * 16 15 13 45 45 H 1.09001 * 109.49907 * 178.65451 * 16 15 13 46 46 H 1.08995 * 109.73693 * 295.11306 * 17 16 15 47 47 H 1.08997 * 109.65955 * 174.54978 * 17 16 15 48 48 H 0.96999 * 119.99925 * 4.04910 * 22 21 19 49 49 H 1.09005 * 109.58307 * 173.64915 * 27 18 17 50 50 H 1.08993 * 109.58946 * 294.07467 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1924 -0.1527 2.4200 6 6 2.6641 -1.1489 3.2267 7 6 3.0003 -1.0141 4.6569 8 8 2.8685 0.0588 5.2139 9 7 3.4536 -2.0800 5.3459 10 6 3.7869 -1.9462 6.7662 11 1 4.2070 -0.9571 6.9493 12 6 2.5210 -2.1261 7.6064 13 6 4.8116 -3.0148 7.1525 14 1 5.7141 -2.8863 6.5549 15 6 5.1580 -2.8784 8.6369 16 6 6.2075 -3.9258 9.0158 17 6 5.6293 -5.3297 8.7816 18 7 5.1645 -5.4174 7.3906 19 6 5.5973 -6.4270 6.5728 20 1 5.6406 -6.2754 5.5044 21 6 5.9806 -7.6451 7.1170 22 7 5.4846 -8.0349 8.2723 23 14 7.1940 -8.7347 6.2062 24 1 7.5949 -8.0761 4.9372 25 1 8.3954 -8.9519 7.0517 26 1 6.5569 -10.0421 5.9062 27 6 4.2218 -4.4051 6.8955 28 7 2.7647 -2.2742 2.4988 29 7 2.3898 -2.0394 1.2896 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.9983 0.8703 2.7070 38 1 3.5591 -2.9356 4.9015 39 1 2.7691 -2.0270 8.6631 40 1 1.7911 -1.3648 7.3312 41 1 2.1010 -3.1152 7.4233 42 1 5.5550 -1.8812 8.8270 43 1 4.2597 -3.0316 9.2350 44 1 7.0969 -3.7887 8.4008 45 1 6.4714 -3.8126 10.0674 46 1 4.7920 -5.5005 9.4581 47 1 6.4018 -6.0784 8.9567 48 1 4.8077 -7.4994 8.7149 49 1 4.0655 -4.5437 5.8256 50 1 3.2720 -4.5020 7.4212 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025581663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:07 Heat of formation + Delta-G solvation = 66.070361 kcal Electronic energy + Delta-G solvation = -29510.816898 eV Core-core repulsion = 25575.354035 eV Total energy + Delta-G solvation = -3935.462863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.42646 -39.71213 -38.03694 -36.87020 -35.31600 -33.17317 -31.85366 -31.48465 -30.38948 -30.30422 -28.10120 -28.00938 -25.13811 -24.88474 -23.99328 -23.16719 -22.15909 -21.14186 -20.70532 -20.09069 -18.74391 -18.13095 -17.28793 -16.40979 -16.29391 -15.92129 -15.28270 -14.88492 -14.84133 -14.56835 -14.35111 -14.05706 -13.76078 -13.68325 -13.54451 -13.27380 -13.23522 -12.98110 -12.76481 -12.48943 -12.42669 -12.18539 -12.13051 -11.95462 -11.83067 -11.57083 -11.35901 -10.96201 -10.77614 -10.61155 -10.51200 -10.34193 -10.16338 -10.06279 -10.03581 -9.84125 -9.72853 -9.47830 -9.20468 -8.88159 -8.28872 -6.80467 -6.03435 -3.16217 0.94730 1.63088 1.72923 3.21262 3.30344 3.55328 3.57806 3.71901 3.81734 4.03969 4.13341 4.33316 4.51670 4.62993 4.71257 4.79854 4.86661 4.97279 4.99803 5.02296 5.18944 5.21255 5.38208 5.41598 5.43171 5.46043 5.53085 5.61891 5.66823 5.69323 5.82187 5.97275 6.09904 6.13900 6.17917 6.19144 6.30288 6.43013 6.53329 6.57522 6.65165 6.75024 6.76508 6.90400 7.15801 7.26016 7.55269 7.85641 8.07902 8.24896 8.63690 9.17636 9.90907 10.35633 11.26881 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013839 B = 0.002731 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.776422 B =10249.777200 C =11767.838941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.143 3.857 3 C -0.169 4.169 4 N -0.358 5.358 5 C 0.092 3.908 6 C -0.100 4.100 7 C 0.604 3.396 8 O -0.548 6.548 9 N -0.703 5.703 10 C 0.150 3.850 11 H 0.084 0.916 12 C -0.165 4.165 13 C -0.113 4.113 14 H 0.073 0.927 15 C -0.101 4.101 16 C -0.137 4.137 17 C 0.150 3.850 18 N -0.598 5.598 19 C -0.349 4.349 20 H 0.056 0.944 21 C -0.025 4.025 22 N -0.917 5.917 23 Si 1.068 2.932 24 H -0.292 1.292 25 H -0.291 1.291 26 H -0.294 1.294 27 C 0.153 3.847 28 N -0.200 5.200 29 N -0.064 5.064 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.201 0.799 38 H 0.411 0.589 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.016 0.984 47 H 0.078 0.922 48 H 0.269 0.731 49 H 0.051 0.949 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.968 20.892 -13.281 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.042 3.958 3 C -0.227 4.227 4 N -0.143 5.143 5 C -0.065 4.065 6 C -0.239 4.239 7 C 0.388 3.612 8 O -0.425 6.425 9 N -0.354 5.354 10 C 0.046 3.954 11 H 0.102 0.898 12 C -0.223 4.223 13 C -0.134 4.134 14 H 0.092 0.908 15 C -0.139 4.139 16 C -0.176 4.176 17 C 0.024 3.976 18 N -0.321 5.321 19 C -0.478 4.478 20 H 0.074 0.926 21 C -0.227 4.227 22 N -0.558 5.558 23 Si 0.899 3.101 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.222 1.222 27 C 0.026 3.974 28 N -0.074 5.074 29 N -0.044 5.044 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.218 0.782 38 H 0.248 0.752 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.034 0.966 47 H 0.096 0.904 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.051 18.871 -13.613 24.622 hybrid contribution -1.018 2.029 -0.011 2.270 sum -9.069 20.900 -13.624 26.546 Atomic orbital electron populations 1.22262 0.92476 1.03954 1.03800 1.21638 0.95687 0.93404 0.85084 1.22269 1.02748 0.93329 1.04365 1.50785 1.44615 1.09902 1.09043 1.23223 0.97666 1.01053 0.84600 1.21545 1.14364 0.90717 0.97322 1.16764 0.77005 0.84250 0.83175 1.90776 1.55006 1.27119 1.69613 1.46030 1.64966 1.12989 1.11413 1.21064 0.95502 1.00108 0.78741 0.89777 1.22265 0.97601 1.02340 1.00118 1.21939 0.97830 0.96242 0.97350 0.90820 1.21432 0.99306 0.98227 0.94898 1.22137 0.98295 0.97810 0.99384 1.21044 0.97125 0.93828 0.85643 1.44105 1.49459 1.28851 1.09702 1.20015 1.43925 0.92771 0.91051 0.92571 1.25816 1.02264 0.95181 0.99412 1.70729 1.27658 1.38338 1.19048 0.83479 0.76373 0.75419 0.74859 1.21808 1.21759 1.22161 1.20968 0.91734 0.87132 0.97537 1.74699 1.10789 1.23162 0.98714 1.82034 1.18260 0.91605 1.12488 0.91132 0.91447 0.89682 0.86747 0.91050 0.89276 0.91049 0.78232 0.75197 0.91290 0.92735 0.91684 0.93227 0.92143 0.92413 0.93060 0.96598 0.90398 0.91985 0.93040 0.95954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 9.52 37.16 0.35 -0.33 16 2 C 0.14 0.74 3.96 -67.93 -0.27 0.47 16 3 C -0.17 -0.52 8.85 37.16 0.33 -0.19 16 4 N -0.36 -3.37 3.54 -54.56 -0.19 -3.57 16 5 C 0.09 0.92 10.40 -16.84 -0.18 0.75 16 6 C -0.10 -1.36 6.99 -83.55 -0.58 -1.94 16 7 C 0.60 9.14 7.78 -12.47 -0.10 9.04 16 8 O -0.55 -9.10 16.53 5.28 0.09 -9.01 16 9 N -0.70 -10.73 5.00 -54.84 -0.27 -11.00 16 10 C 0.15 2.28 2.41 -67.93 -0.16 2.12 16 11 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 12 C -0.17 -2.36 8.79 37.16 0.33 -2.03 16 13 C -0.11 -1.94 2.33 -90.50 -0.21 -2.15 16 14 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 15 C -0.10 -1.65 4.77 -26.69 -0.13 -1.78 16 16 C -0.14 -2.58 6.10 -26.38 -0.16 -2.74 16 17 C 0.15 3.50 4.72 -3.49 -0.02 3.48 16 18 N -0.60 -14.92 2.85 -172.06 -0.49 -15.41 16 19 C -0.35 -9.79 9.49 -15.06 -0.14 -9.94 16 20 H 0.06 1.60 7.95 -52.49 -0.42 1.18 16 21 C -0.02 -0.71 4.66 -17.43 -0.08 -0.79 16 22 N -0.92 -27.69 12.46 55.49 0.69 -26.99 16 23 Si 1.07 25.78 29.99 -169.99 -5.10 20.69 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 C 0.15 3.16 5.29 -3.71 -0.02 3.14 16 28 N -0.20 -2.99 12.04 32.85 0.40 -2.59 16 29 N -0.06 -0.86 13.78 60.35 0.83 -0.02 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 36 H 0.07 0.20 7.23 -51.93 -0.38 -0.18 16 37 H 0.20 1.40 7.35 -52.49 -0.39 1.01 16 38 H 0.41 6.47 6.65 -40.82 -0.27 6.20 16 39 H 0.07 0.92 6.46 -51.93 -0.34 0.58 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.98 6.32 -51.93 -0.33 0.65 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.97 6.50 -51.93 -0.34 0.63 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.02 0.38 7.87 -51.93 -0.41 -0.03 16 47 H 0.08 2.06 6.31 -51.93 -0.33 1.73 16 48 H 0.27 8.17 6.69 -40.82 -0.27 7.90 16 49 H 0.05 1.08 6.52 -51.93 -0.34 0.74 16 50 H 0.02 0.47 6.18 -51.93 -0.32 0.15 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -33.92 392.72 -7.13 -41.05 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.96 Total: 3.85 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.04 Total: -2.91 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.96 Total: -59.58 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.10 Total: 20.69 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.92 -7.13 -41.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025581663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.117 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds