Wall clock time and date at job start Tue Mar 31 2020 19:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47194 * 2 1 4 4 N 1.28719 * 126.03468 * 264.69245 * 3 2 1 5 5 N 1.28515 * 110.63582 * 180.26714 * 4 3 2 6 6 C 1.33323 * 109.44077 * 359.74689 * 5 4 3 7 7 C 1.37013 * 106.37182 * 0.02562 * 6 5 4 8 8 C 1.47229 * 127.19041 * 179.97438 * 7 6 5 9 9 O 1.21615 * 120.00229 * 185.67219 * 8 7 6 10 10 N 1.34775 * 119.99970 * 5.66510 * 8 7 6 11 11 C 1.46497 * 120.00005 * 185.15446 * 10 8 7 12 12 H 1.09001 * 110.21142 * 33.07532 * 11 10 8 13 13 C 1.52658 * 110.22178 * 270.99997 * 11 10 8 14 14 C 1.46241 * 114.20177 * 151.65931 * 13 11 10 15 15 N 1.50164 * 107.58672 * 58.37557 * 14 13 11 16 16 C 1.36936 * 120.53935 * 109.53997 * 15 14 13 17 17 H 1.07998 * 120.00551 * 162.51949 * 16 15 14 18 18 C 1.38814 * 119.99709 * 342.51191 * 16 15 14 19 19 N 1.31616 * 120.00124 * 338.55165 * 18 16 15 20 20 Si 1.86801 * 119.99894 * 158.54077 * 18 16 15 21 21 H 1.48511 * 109.46864 * 60.00412 * 20 18 16 22 22 H 1.48496 * 109.47252 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47369 * 300.00674 * 20 18 16 24 24 C 1.43443 * 118.92646 * 289.55880 * 15 14 13 25 25 C 1.54900 * 116.07960 * 91.56559 * 24 15 14 26 26 C 1.53005 * 109.35836 * 78.84569 * 25 24 15 27 27 C 1.52997 * 109.36054 * 198.43386 * 25 24 15 28 28 C 1.50130 * 110.24896 * 155.00203 * 11 10 8 29 29 H 1.09001 * 109.47002 * 300.00218 * 1 2 3 30 30 H 1.09000 * 109.47141 * 59.99839 * 1 2 3 31 31 H 1.08997 * 109.47575 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46781 * 240.00263 * 2 1 3 33 33 H 1.09000 * 109.47141 * 120.00161 * 2 1 3 34 34 H 1.07996 * 126.81842 * 179.97438 * 6 5 4 35 35 H 0.97005 * 120.00147 * 5.16758 * 10 8 7 36 36 H 1.08995 * 108.61433 * 30.39919 * 13 11 10 37 37 H 1.08999 * 108.50894 * 272.84182 * 13 11 10 38 38 H 1.08998 * 109.84410 * 298.83392 * 14 13 11 39 39 H 1.08996 * 109.84325 * 177.91388 * 14 13 11 40 40 H 0.97001 * 119.99904 * 180.02562 * 19 18 16 41 41 H 1.09004 * 108.15920 * 213.28174 * 24 15 14 42 42 H 1.08995 * 108.15635 * 329.84625 * 24 15 14 43 43 H 1.08998 * 109.46729 * 59.99779 * 26 25 24 44 44 H 1.08996 * 109.47127 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.46947 * 299.99912 * 26 25 24 46 46 H 1.08995 * 109.46913 * 59.99703 * 27 25 24 47 47 H 1.08996 * 109.47337 * 180.02562 * 27 25 24 48 48 H 1.09006 * 109.47222 * 300.00367 * 27 25 24 49 49 H 1.09007 * 109.20833 * 96.31332 * 28 11 10 50 50 H 1.08994 * 109.17237 * 336.98193 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3615 2.0630 -1.0364 5 7 2.7500 3.2398 -0.6961 6 6 2.6639 3.3700 0.6279 7 6 2.1881 2.1762 1.1032 8 6 1.9202 1.8202 2.5064 9 8 1.5950 0.6843 2.7942 10 7 2.0356 2.7532 3.4722 11 6 1.8801 2.3745 4.8788 12 1 2.2506 1.3621 5.0395 13 6 0.4145 2.4762 5.2937 14 6 0.0307 1.5614 6.3681 15 7 0.9057 1.8590 7.5516 16 6 0.3851 2.4537 8.6699 17 1 0.9245 2.4120 9.6046 18 6 -0.8361 3.1102 8.6021 19 7 -1.2920 3.5339 7.4424 20 14 -1.8325 3.3921 10.1568 21 1 -1.0396 4.2072 11.1119 22 1 -3.0879 4.1089 9.8170 23 1 -2.1624 2.0840 10.7774 24 6 2.2959 1.5107 7.4917 25 6 3.2518 2.6116 6.9683 26 6 3.5240 3.6203 8.0860 27 6 4.5720 1.9722 6.5335 28 6 2.6135 3.3423 5.7616 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 2.9193 4.2428 1.2104 35 1 2.2215 3.6755 3.2359 36 1 -0.2085 2.2693 4.4236 37 1 0.2176 3.4971 5.6212 38 1 0.1801 0.5305 6.0474 39 1 -1.0150 1.7188 6.6322 40 1 -2.1452 3.9930 7.3951 41 1 2.6190 1.2287 8.4938 42 1 2.3997 0.6368 6.8487 43 1 3.9845 3.1099 8.9319 44 1 4.1961 4.3961 7.7195 45 1 2.5848 4.0738 8.4028 46 1 4.3815 1.2482 5.7413 47 1 5.2463 2.7453 6.1653 48 1 5.0290 1.4674 7.3847 49 1 1.9148 4.0951 6.1269 50 1 3.3972 3.8314 5.1831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089376708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:44 Heat of formation + Delta-G solvation = 84.995374 kcal Electronic energy + Delta-G solvation = -31003.766612 eV Core-core repulsion = 27069.124399 eV Total energy + Delta-G solvation = -3934.642212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.41572 -39.87224 -38.23896 -35.73735 -34.67521 -34.46720 -32.24997 -31.14639 -30.95652 -30.31756 -27.62599 -26.74285 -25.56082 -25.07281 -23.99527 -23.34995 -22.43579 -21.30852 -20.39854 -20.00715 -18.45808 -17.63004 -16.92952 -16.71796 -16.50933 -15.85514 -15.16860 -15.03047 -14.58059 -14.49860 -14.19644 -14.01489 -13.70113 -13.48748 -13.32696 -13.19321 -12.67762 -12.47480 -12.42169 -12.18859 -11.94966 -11.79479 -11.73395 -11.50381 -11.30390 -11.14625 -10.94800 -10.90416 -10.73350 -10.65026 -10.38586 -10.30754 -10.13045 -10.12237 -9.80984 -9.69465 -9.61871 -9.56969 -9.32673 -8.80925 -8.35102 -6.79859 -5.81497 -3.15278 0.85200 1.95856 2.18936 3.10229 3.16707 3.37050 3.43958 3.46233 4.17570 4.37123 4.49150 4.58494 4.63402 4.83149 4.95570 5.15812 5.20102 5.32482 5.34781 5.40179 5.45119 5.51906 5.61928 5.77499 5.80975 5.83245 5.91473 5.97254 6.08579 6.19759 6.21690 6.26844 6.29020 6.37911 6.49198 6.51847 6.65197 6.72013 6.81577 6.90597 6.96457 6.99901 7.14309 7.16852 7.52199 7.63334 7.70563 7.87326 8.13357 8.23774 8.37743 9.15777 9.85166 10.35434 11.25387 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015277 B = 0.003411 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.355442 B = 8205.853772 C = 9046.107455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.253 5.253 4 N -0.066 5.066 5 N -0.276 5.276 6 C -0.004 4.004 7 C -0.062 4.062 8 C 0.590 3.410 9 O -0.533 6.533 10 N -0.699 5.699 11 C 0.147 3.853 12 H 0.089 0.911 13 C -0.127 4.127 14 C 0.161 3.839 15 N -0.586 5.586 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.001 4.001 19 N -0.902 5.902 20 Si 0.897 3.103 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.287 1.287 24 C 0.166 3.834 25 C -0.090 4.090 26 C -0.129 4.129 27 C -0.136 4.136 28 C -0.103 4.103 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.197 0.803 35 H 0.398 0.602 36 H 0.031 0.969 37 H 0.095 0.905 38 H 0.008 0.992 39 H 0.104 0.896 40 H 0.252 0.748 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.043 0.957 44 H 0.034 0.966 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.044 0.956 48 H 0.049 0.951 49 H 0.082 0.918 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.585 -3.071 -10.983 13.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.014 4.014 3 N -0.050 5.050 4 N -0.046 5.046 5 N -0.139 5.139 6 C -0.165 4.165 7 C -0.196 4.196 8 C 0.373 3.627 9 O -0.409 6.409 10 N -0.348 5.348 11 C 0.045 3.955 12 H 0.107 0.893 13 C -0.167 4.167 14 C 0.037 3.963 15 N -0.306 5.306 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.199 4.199 19 N -0.548 5.548 20 Si 0.727 3.273 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.213 1.213 24 C 0.036 3.964 25 C -0.094 4.094 26 C -0.187 4.187 27 C -0.194 4.194 28 C -0.141 4.141 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.214 0.786 35 H 0.232 0.768 36 H 0.050 0.950 37 H 0.113 0.887 38 H 0.026 0.974 39 H 0.122 0.878 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.100 0.900 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.314 -3.869 -12.296 14.821 hybrid contribution -0.533 0.804 1.695 1.950 sum 6.781 -3.064 -10.601 12.952 Atomic orbital electron populations 1.22097 0.92534 1.04195 1.03487 1.22382 0.96898 0.75633 1.06455 1.47891 1.39910 1.13493 1.03720 1.78234 1.14517 1.00040 1.11820 1.74876 1.17165 1.09257 1.12592 1.23885 1.02627 0.97872 0.92083 1.22175 1.12317 0.93618 0.91526 1.16670 0.78123 0.85622 0.82312 1.90805 1.47398 1.20073 1.82657 1.46010 1.70954 1.10821 1.07063 1.20675 0.98798 0.99748 0.76289 0.89276 1.21296 0.91797 1.05511 0.98059 1.20309 0.98611 0.92291 0.85094 1.44325 1.01657 1.69311 1.15301 1.19185 1.02725 1.27298 0.87723 0.91278 1.24742 0.99990 0.98721 0.96399 1.69969 1.20996 1.40641 1.23146 0.86447 0.79849 0.77661 0.83326 1.21184 1.21841 1.21337 1.20500 0.84953 0.93091 0.97846 1.21950 0.94904 0.97953 0.94568 1.21748 1.01742 0.97918 0.97243 1.21850 0.97075 0.99987 1.00438 1.21805 0.98876 0.98141 0.95280 0.90985 0.91807 0.89447 0.87576 0.86099 0.78634 0.76795 0.95025 0.88656 0.97427 0.87787 0.93766 0.94757 0.95284 0.93827 0.94695 0.90967 0.93432 0.93652 0.93212 0.89951 0.93735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 10.24 37.15 0.38 -1.14 16 2 C 0.11 1.04 6.52 -4.04 -0.03 1.01 16 3 N -0.25 -3.17 3.39 -57.37 -0.19 -3.37 16 4 N -0.07 -0.90 13.14 60.35 0.79 -0.11 16 5 N -0.28 -3.83 12.35 30.47 0.38 -3.46 16 6 C 0.00 -0.05 11.54 -17.35 -0.20 -0.25 16 7 C -0.06 -0.80 6.98 -82.33 -0.57 -1.37 16 8 C 0.59 8.49 7.79 -12.61 -0.10 8.39 16 9 O -0.53 -9.00 14.67 5.26 0.08 -8.93 16 10 N -0.70 -9.51 4.93 -56.52 -0.28 -9.79 16 11 C 0.15 2.44 2.13 -69.53 -0.15 2.29 16 12 H 0.09 1.63 5.24 -51.93 -0.27 1.36 16 13 C -0.13 -2.53 4.75 -30.12 -0.14 -2.68 16 14 C 0.16 3.60 5.26 -5.21 -0.03 3.57 16 15 N -0.59 -13.25 2.62 -175.08 -0.46 -13.71 16 16 C -0.24 -6.00 8.98 -15.06 -0.14 -6.13 16 17 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 18 C 0.00 -0.03 4.95 -17.43 -0.09 -0.12 16 19 N -0.90 -23.49 9.45 55.49 0.52 -22.96 16 20 Si 0.90 20.70 29.60 -169.99 -5.03 15.66 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.17 3.20 4.00 -4.66 -0.02 3.18 16 25 C -0.09 -1.47 0.76 -152.54 -0.12 -1.59 16 26 C -0.13 -2.14 8.29 37.16 0.31 -1.83 16 27 C -0.14 -1.89 8.20 37.16 0.30 -1.58 16 28 C -0.10 -1.66 4.15 -27.19 -0.11 -1.78 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.12 1.25 6.66 -51.93 -0.35 0.91 16 34 H 0.20 1.56 7.60 -52.49 -0.40 1.16 16 35 H 0.40 4.32 7.61 -40.82 -0.31 4.01 16 36 H 0.03 0.64 8.02 -51.93 -0.42 0.22 16 37 H 0.10 2.15 5.68 -51.93 -0.29 1.86 16 38 H 0.01 0.17 8.12 -51.93 -0.42 -0.25 16 39 H 0.10 2.64 5.65 -51.93 -0.29 2.35 16 40 H 0.25 6.55 8.31 -40.82 -0.34 6.21 16 41 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 42 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 43 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 1.41 7.45 -51.93 -0.39 1.03 16 46 H 0.05 0.67 7.57 -51.93 -0.39 0.27 16 47 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.08 1.57 6.66 -51.92 -0.35 1.23 16 50 H 0.04 0.61 7.67 -51.93 -0.40 0.22 16 LS Contribution 385.76 15.07 5.81 5.81 Total: -1.00 -28.56 385.76 -7.04 -35.60 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -7.96 Total: 5.26 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.69 Total: -0.02 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.76 Total: -53.39 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.56 -7.04 -35.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089376708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.596 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds