Wall clock time and date at job start Tue Mar 31 2020 19:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47194 * 2 1 4 4 N 1.28719 * 126.03468 * 264.69245 * 3 2 1 5 5 N 1.28515 * 110.63582 * 180.26714 * 4 3 2 6 6 C 1.33323 * 109.44077 * 359.74689 * 5 4 3 7 7 C 1.37013 * 106.37182 * 0.02562 * 6 5 4 8 8 C 1.47229 * 127.19041 * 179.97438 * 7 6 5 9 9 O 1.21615 * 120.00229 * 185.67219 * 8 7 6 10 10 N 1.34775 * 119.99970 * 5.66510 * 8 7 6 11 11 C 1.46497 * 120.00005 * 185.15446 * 10 8 7 12 12 H 1.09001 * 110.21142 * 33.07532 * 11 10 8 13 13 C 1.52658 * 110.22178 * 270.99997 * 11 10 8 14 14 C 1.46241 * 114.20177 * 151.65931 * 13 11 10 15 15 N 1.50164 * 107.58672 * 58.37557 * 14 13 11 16 16 C 1.36936 * 120.53935 * 109.53997 * 15 14 13 17 17 H 1.07998 * 120.00551 * 162.51949 * 16 15 14 18 18 C 1.38814 * 119.99709 * 342.51191 * 16 15 14 19 19 N 1.31616 * 120.00124 * 338.55165 * 18 16 15 20 20 Si 1.86801 * 119.99894 * 158.54077 * 18 16 15 21 21 H 1.48511 * 109.46864 * 60.00412 * 20 18 16 22 22 H 1.48496 * 109.47252 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47369 * 300.00674 * 20 18 16 24 24 C 1.43443 * 118.92646 * 289.55880 * 15 14 13 25 25 C 1.54900 * 116.07960 * 91.56559 * 24 15 14 26 26 C 1.53005 * 109.35836 * 78.84569 * 25 24 15 27 27 C 1.52997 * 109.36054 * 198.43386 * 25 24 15 28 28 C 1.50130 * 110.24896 * 155.00203 * 11 10 8 29 29 H 1.09001 * 109.47002 * 300.00218 * 1 2 3 30 30 H 1.09000 * 109.47141 * 59.99839 * 1 2 3 31 31 H 1.08997 * 109.47575 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46781 * 240.00263 * 2 1 3 33 33 H 1.09000 * 109.47141 * 120.00161 * 2 1 3 34 34 H 1.07996 * 126.81842 * 179.97438 * 6 5 4 35 35 H 0.97005 * 120.00147 * 5.16758 * 10 8 7 36 36 H 1.08995 * 108.61433 * 30.39919 * 13 11 10 37 37 H 1.08999 * 108.50894 * 272.84182 * 13 11 10 38 38 H 1.08998 * 109.84410 * 298.83392 * 14 13 11 39 39 H 1.08996 * 109.84325 * 177.91388 * 14 13 11 40 40 H 0.97001 * 119.99904 * 180.02562 * 19 18 16 41 41 H 1.09004 * 108.15920 * 213.28174 * 24 15 14 42 42 H 1.08995 * 108.15635 * 329.84625 * 24 15 14 43 43 H 1.08998 * 109.46729 * 59.99779 * 26 25 24 44 44 H 1.08996 * 109.47127 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.46947 * 299.99912 * 26 25 24 46 46 H 1.08995 * 109.46913 * 59.99703 * 27 25 24 47 47 H 1.08996 * 109.47337 * 180.02562 * 27 25 24 48 48 H 1.09006 * 109.47222 * 300.00367 * 27 25 24 49 49 H 1.09007 * 109.20833 * 96.31332 * 28 11 10 50 50 H 1.08994 * 109.17237 * 336.98193 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3615 2.0630 -1.0364 5 7 2.7500 3.2398 -0.6961 6 6 2.6639 3.3700 0.6279 7 6 2.1881 2.1762 1.1032 8 6 1.9202 1.8202 2.5064 9 8 1.5950 0.6843 2.7942 10 7 2.0356 2.7532 3.4722 11 6 1.8801 2.3745 4.8788 12 1 2.2506 1.3621 5.0395 13 6 0.4145 2.4762 5.2937 14 6 0.0307 1.5614 6.3681 15 7 0.9057 1.8590 7.5516 16 6 0.3851 2.4537 8.6699 17 1 0.9245 2.4120 9.6046 18 6 -0.8361 3.1102 8.6021 19 7 -1.2920 3.5339 7.4424 20 14 -1.8325 3.3921 10.1568 21 1 -1.0396 4.2072 11.1119 22 1 -3.0879 4.1089 9.8170 23 1 -2.1624 2.0840 10.7774 24 6 2.2959 1.5107 7.4917 25 6 3.2518 2.6116 6.9683 26 6 3.5240 3.6203 8.0860 27 6 4.5720 1.9722 6.5335 28 6 2.6135 3.3423 5.7616 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 2.9193 4.2428 1.2104 35 1 2.2215 3.6755 3.2359 36 1 -0.2085 2.2693 4.4236 37 1 0.2176 3.4971 5.6212 38 1 0.1801 0.5305 6.0474 39 1 -1.0150 1.7188 6.6322 40 1 -2.1452 3.9930 7.3951 41 1 2.6190 1.2287 8.4938 42 1 2.3997 0.6368 6.8487 43 1 3.9845 3.1099 8.9319 44 1 4.1961 4.3961 7.7195 45 1 2.5848 4.0738 8.4028 46 1 4.3815 1.2482 5.7413 47 1 5.2463 2.7453 6.1653 48 1 5.0290 1.4674 7.3847 49 1 1.9148 4.0951 6.1269 50 1 3.3972 3.8314 5.1831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089376708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:43 Heat of formation + Delta-G solvation = 67.598434 kcal Electronic energy + Delta-G solvation = -31004.521000 eV Core-core repulsion = 27069.124399 eV Total energy + Delta-G solvation = -3935.396600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.39117 -41.18886 -39.62689 -36.72253 -36.16813 -35.85328 -33.60529 -32.79834 -31.85863 -31.65556 -29.07661 -28.01833 -27.27148 -26.06031 -25.18290 -24.69066 -23.62499 -22.68240 -21.56629 -21.52871 -19.70058 -18.83053 -18.56764 -17.93033 -17.51440 -17.15794 -16.85090 -16.02724 -15.88550 -15.81249 -15.58324 -15.21226 -15.09997 -14.93608 -14.74610 -14.20796 -14.00004 -13.82658 -13.48443 -13.24728 -13.22405 -13.17638 -13.03235 -12.88927 -12.67527 -12.59993 -12.46966 -12.35878 -12.25009 -12.03743 -11.90169 -11.70203 -11.55844 -11.36539 -11.30692 -11.12115 -11.07493 -10.96963 -10.63490 -10.44616 -9.93350 -8.65050 -7.76654 -5.10307 -0.15329 1.04050 1.20481 1.49976 1.54294 1.58233 2.00080 2.06188 2.58903 3.28110 3.35982 3.41547 3.61399 3.66713 3.87434 3.94964 3.98268 4.07884 4.10720 4.22532 4.33511 4.45303 4.49847 4.55355 4.60719 4.77624 4.81372 4.82247 4.90945 4.94293 4.97027 4.98243 5.06905 5.09977 5.14728 5.24485 5.28863 5.32548 5.35416 5.36570 5.51003 5.55655 5.68786 5.71306 5.73744 5.81887 6.10098 6.41816 6.45400 7.03278 7.22287 7.23810 7.97469 8.46452 9.27802 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015277 B = 0.003411 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.355442 B = 8205.853772 C = 9046.107455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.100 3.900 3 N -0.250 5.250 4 N -0.076 5.076 5 N -0.300 5.300 6 C 0.012 3.988 7 C -0.077 4.077 8 C 0.595 3.405 9 O -0.560 6.560 10 N -0.689 5.689 11 C 0.167 3.833 12 H 0.078 0.922 13 C -0.111 4.111 14 C 0.165 3.835 15 N -0.596 5.596 16 C -0.241 4.241 17 H 0.065 0.935 18 C -0.044 4.044 19 N -0.917 5.917 20 Si 0.947 3.053 21 H -0.281 1.281 22 H -0.299 1.299 23 H -0.289 1.289 24 C 0.162 3.838 25 C -0.085 4.085 26 C -0.123 4.123 27 C -0.128 4.128 28 C -0.095 4.095 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.114 0.886 34 H 0.232 0.768 35 H 0.414 0.586 36 H 0.022 0.978 37 H 0.070 0.930 38 H 0.007 0.993 39 H 0.072 0.928 40 H 0.245 0.755 41 H 0.028 0.972 42 H 0.031 0.969 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.034 0.966 46 H 0.047 0.953 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.051 0.949 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.723 -2.837 -11.859 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.019 4.019 3 N -0.048 5.048 4 N -0.057 5.057 5 N -0.161 5.161 6 C -0.149 4.149 7 C -0.211 4.211 8 C 0.379 3.621 9 O -0.439 6.439 10 N -0.340 5.340 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.151 4.151 14 C 0.041 3.959 15 N -0.317 5.317 16 C -0.371 4.371 17 H 0.083 0.917 18 C -0.239 4.239 19 N -0.564 5.564 20 Si 0.778 3.222 21 H -0.208 1.208 22 H -0.226 1.226 23 H -0.216 1.216 24 C 0.034 3.966 25 C -0.089 4.089 26 C -0.180 4.180 27 C -0.185 4.185 28 C -0.133 4.133 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.152 0.848 33 H 0.133 0.867 34 H 0.249 0.751 35 H 0.252 0.748 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.025 0.975 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.486 -3.623 -13.190 16.646 hybrid contribution -1.202 0.652 1.968 2.397 sum 8.284 -2.971 -11.221 14.261 Atomic orbital electron populations 1.22058 0.92217 1.05290 1.02096 1.22624 0.97106 0.74687 1.07493 1.48159 1.39111 1.14119 1.03385 1.78203 1.14886 1.00373 1.12192 1.74872 1.18101 1.09496 1.13664 1.24479 1.00637 0.98322 0.91497 1.22017 1.13823 0.94447 0.90831 1.16789 0.77275 0.85142 0.82895 1.90797 1.48566 1.21321 1.83188 1.45748 1.70777 1.11723 1.05737 1.20226 0.96076 0.99433 0.77991 0.90402 1.21049 0.94295 1.03065 0.96676 1.20114 0.97057 0.92734 0.85987 1.44352 1.03212 1.69311 1.14861 1.19319 1.02847 1.26538 0.88383 0.91676 1.25255 1.00914 0.99438 0.98285 1.70108 1.20676 1.41436 1.24186 0.85644 0.78427 0.77110 0.81051 1.20766 1.22552 1.21645 1.20621 0.83866 0.94309 0.97830 1.21845 0.95549 0.96919 0.94600 1.21661 1.00357 0.98414 0.97560 1.21765 0.95483 1.00466 1.00819 1.21665 0.99033 0.97235 0.95349 0.93804 0.91557 0.87188 0.84831 0.86748 0.75133 0.74844 0.95970 0.91160 0.97491 0.91040 0.94593 0.95342 0.95049 0.93168 0.92284 0.94670 0.93433 0.91446 0.92376 0.93015 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.24 71.98 0.74 -2.05 16 2 C 0.10 1.82 6.52 86.38 0.56 2.38 16 3 N -0.25 -5.90 3.39 -335.43 -1.14 -7.04 16 4 N -0.08 -1.98 13.14 37.02 0.49 -1.49 16 5 N -0.30 -7.73 12.35 -57.50 -0.71 -8.44 16 6 C 0.01 0.24 11.54 84.18 0.97 1.21 16 7 C -0.08 -1.84 6.98 40.41 0.28 -1.56 16 8 C 0.59 16.33 7.79 86.61 0.67 17.00 16 9 O -0.56 -18.65 14.67 -4.08 -0.06 -18.71 16 10 N -0.69 -17.50 4.93 -450.98 -2.22 -19.72 16 11 C 0.17 5.35 2.13 43.95 0.09 5.44 16 12 H 0.08 2.76 5.24 -2.39 -0.01 2.75 16 13 C -0.11 -4.52 4.75 28.40 0.13 -4.39 16 14 C 0.17 7.64 5.26 83.58 0.44 8.08 16 15 N -0.60 -27.47 2.62 -707.83 -1.85 -29.33 16 16 C -0.24 -12.28 8.98 84.03 0.75 -11.52 16 17 H 0.07 3.32 7.89 -2.91 -0.02 3.29 16 18 C -0.04 -2.28 4.95 84.86 0.42 -1.86 16 19 N -0.92 -49.39 9.45 21.65 0.20 -49.18 16 20 Si 0.95 43.40 29.60 68.60 2.03 45.44 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 24 C 0.16 6.18 4.00 87.59 0.35 6.53 16 25 C -0.09 -2.64 0.76 -50.90 -0.04 -2.68 16 26 C -0.12 -3.84 8.29 71.98 0.60 -3.25 16 27 C -0.13 -3.10 8.20 71.98 0.59 -2.51 16 28 C -0.09 -2.89 4.15 30.30 0.13 -2.77 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 2.28 6.66 -2.39 -0.02 2.26 16 34 H 0.23 2.79 7.60 -2.91 -0.02 2.77 16 35 H 0.41 7.82 7.61 -92.70 -0.71 7.12 16 36 H 0.02 0.91 8.02 -2.39 -0.02 0.89 16 37 H 0.07 3.26 5.68 -2.39 -0.01 3.25 16 38 H 0.01 0.32 8.12 -2.39 -0.02 0.30 16 39 H 0.07 3.80 5.65 -2.39 -0.01 3.78 16 40 H 0.24 13.15 8.31 -92.71 -0.77 12.38 16 41 H 0.03 1.11 7.83 -2.38 -0.02 1.09 16 42 H 0.03 1.17 6.68 -2.39 -0.02 1.16 16 43 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.03 1.36 7.45 -2.39 -0.02 1.34 16 46 H 0.05 1.17 7.57 -2.39 -0.02 1.15 16 47 H 0.07 1.38 8.12 -2.39 -0.02 1.36 16 48 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 49 H 0.05 1.95 6.66 -2.38 -0.02 1.93 16 50 H 0.08 1.88 7.67 -2.39 -0.02 1.86 16 Total: -1.00 -63.68 385.76 3.68 -60.01 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.25 Total: 20.41 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 6.69 Total: 8.07 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -5.23 Total: -115.21 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.06 Total: -18.71 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.44 kcal Total: -63.68 3.68 -60.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089376708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.606 kcal (2) G-P(sol) polarization free energy of solvation -63.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds