Wall clock time and date at job start Tue Mar 31 2020 18:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46769 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99438 * 2 1 3 5 5 C 1.53001 * 109.46886 * 184.99838 * 4 2 1 6 6 C 1.53000 * 109.46886 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47060 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47473 * 180.02562 * 7 6 5 9 9 C 1.36939 * 120.00037 * 179.97438 * 8 7 6 10 10 H 1.07993 * 120.00126 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99653 * 179.97438 * 9 8 7 12 12 N 1.31613 * 119.99744 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00081 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47117 * 89.99642 * 13 11 9 15 15 H 1.48500 * 109.47001 * 209.99705 * 13 11 9 16 16 H 1.48501 * 109.47010 * 329.99571 * 13 11 9 17 17 N 1.46498 * 109.47107 * 239.99680 * 2 1 3 18 18 C 1.34775 * 119.99962 * 85.00055 * 17 2 1 19 19 O 1.21284 * 120.00239 * 359.97438 * 18 17 2 20 20 C 1.50697 * 119.99756 * 179.97438 * 18 17 2 21 21 H 1.08998 * 109.45632 * 60.00448 * 20 18 17 22 22 C 1.53148 * 109.45237 * 179.97438 * 20 18 17 23 23 C 1.53462 * 109.30501 * 189.46967 * 22 20 18 24 24 C 1.50807 * 108.13272 * 311.28181 * 23 22 20 25 25 N 1.29836 * 128.52614 * 195.85464 * 24 23 22 26 26 N 1.28910 * 109.47573 * 179.91013 * 25 24 23 27 27 C 1.30838 * 109.74491 * 0.04093 * 26 25 24 28 28 N 1.34692 * 107.06627 * 0.03556 * 27 26 25 29 29 C 1.46247 * 128.84892 * 179.84928 * 28 27 26 30 30 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47210 * 300.00061 * 1 2 3 32 32 H 1.09000 * 109.47381 * 60.00782 * 1 2 3 33 33 H 1.09001 * 109.46741 * 65.00233 * 4 2 1 34 34 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 35 35 H 1.09001 * 109.46652 * 60.00345 * 5 4 2 36 36 H 1.08992 * 109.47514 * 300.00434 * 5 4 2 37 37 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 38 38 H 1.09001 * 109.47194 * 60.00677 * 6 5 4 39 39 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 40 40 H 1.08998 * 109.47533 * 59.99948 * 7 6 5 41 41 H 0.97004 * 119.99396 * 0.02562 * 8 7 6 42 42 H 0.97001 * 120.00351 * 180.02562 * 12 11 9 43 43 H 0.97003 * 120.00177 * 264.99939 * 17 2 1 44 44 H 1.08998 * 109.49684 * 309.41723 * 22 20 18 45 45 H 1.09004 * 109.49867 * 69.52018 * 22 20 18 46 46 H 1.08995 * 109.73265 * 70.94325 * 23 22 20 47 47 H 1.08997 * 109.73062 * 191.62460 * 23 22 20 48 48 H 1.07997 * 126.46425 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.61221 * 77.36689 * 29 28 27 50 50 H 1.08996 * 109.57537 * 316.91143 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3349 2.5628 7 6 5.5996 -1.2264 2.6276 8 7 6.0880 -1.9180 3.8231 9 6 7.4301 -1.9545 4.0927 10 1 8.1285 -1.4732 3.4241 11 6 7.8928 -2.6093 5.2259 12 7 9.1827 -2.6440 5.4852 13 14 6.6848 -3.4412 6.3826 14 1 6.4802 -4.8487 5.9559 15 1 7.2265 -3.4168 7.7651 16 1 5.3876 -2.7193 6.3464 17 7 2.0184 -0.6907 -1.1961 18 6 2.1471 -0.0184 -2.3571 19 8 1.8582 1.1583 -2.4118 20 6 2.6500 -0.7287 -3.5873 21 1 1.9776 -1.5509 -3.8321 22 6 2.7006 0.2554 -4.7596 23 6 2.9825 -0.5147 -6.0567 24 6 4.1547 -1.4317 -5.8128 25 7 4.8972 -2.0444 -6.6841 26 7 5.7982 -2.7337 -6.0720 27 6 5.6640 -2.5873 -4.7787 28 7 4.6194 -1.7605 -4.5808 29 6 4.0550 -1.2810 -3.3197 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.7516 -1.7714 1.2057 34 1 1.6053 -0.2616 2.1370 35 1 3.8531 0.4371 1.3574 36 1 3.9995 -1.0727 0.4261 37 1 3.6402 -0.8758 3.4507 38 1 3.7865 -2.3852 2.5187 39 1 6.0345 -1.6853 1.7397 40 1 5.8876 -0.1761 2.6718 41 1 5.4607 -2.3506 4.4234 42 1 9.5062 -3.1019 6.2768 43 1 2.2491 -1.6318 -1.1525 44 1 1.7440 0.7711 -4.8433 45 1 3.4935 0.9837 -4.5893 46 1 2.1072 -1.1021 -6.3336 47 1 3.2238 0.1862 -6.8558 48 1 6.2754 -3.0436 -4.0143 49 1 4.6868 -0.4913 -2.9130 50 1 3.9944 -2.1058 -2.6097 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176721450.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:46 Heat of formation + Delta-G solvation = 32.686657 kcal Electronic energy + Delta-G solvation = -28672.044605 eV Core-core repulsion = 24735.134117 eV Total energy + Delta-G solvation = -3936.910489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.65533 -40.69701 -37.82772 -36.90296 -35.58249 -34.07934 -33.50636 -32.27282 -31.24899 -30.54941 -29.44495 -27.90334 -25.68696 -24.51249 -23.86515 -22.65122 -22.12547 -21.35742 -21.07600 -20.92474 -19.97926 -18.02193 -17.60385 -17.55065 -16.78638 -16.51808 -16.03614 -15.33061 -15.17359 -14.89259 -14.78463 -14.71390 -14.55122 -14.33399 -14.06857 -13.71431 -13.47573 -13.20371 -12.87497 -12.73719 -12.70098 -12.44105 -12.05808 -12.00304 -11.80866 -11.80423 -11.60447 -11.58937 -11.31006 -11.00247 -10.94281 -10.69518 -10.55883 -10.55313 -10.46633 -10.32521 -10.17240 -9.64745 -9.54366 -9.51823 -8.94800 -7.28595 -5.81629 -3.17514 1.46508 1.86466 2.15474 2.55274 2.60600 3.32310 3.34606 3.40630 3.55930 3.80745 3.85599 3.90306 4.28352 4.33175 4.43459 4.43879 4.54153 4.55855 4.66698 4.68783 4.74318 4.87441 5.02165 5.04064 5.15573 5.18653 5.22641 5.34791 5.37139 5.41171 5.45811 5.50743 5.52546 5.54196 5.64288 5.72199 5.80103 5.86567 5.93907 5.96742 6.04699 6.11435 6.21954 6.44932 6.66396 6.70657 6.95056 7.66255 7.94518 8.37492 8.40183 9.16532 9.88914 10.08665 11.36825 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010372 B = 0.002429 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.860751 B =11525.456517 C =13778.378252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.091 0.909 4 C -0.128 4.128 5 C -0.113 4.113 6 C -0.130 4.130 7 C 0.157 3.843 8 N -0.758 5.758 9 C -0.246 4.246 10 H 0.089 0.911 11 C 0.003 3.997 12 N -0.934 5.934 13 Si 0.886 3.114 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.278 1.278 17 N -0.720 5.720 18 C 0.524 3.476 19 O -0.526 6.526 20 C -0.124 4.124 21 H 0.111 0.889 22 C -0.107 4.107 23 C -0.034 4.034 24 C 0.174 3.826 25 N -0.292 5.292 26 N -0.301 5.301 27 C 0.160 3.840 28 N -0.473 5.473 29 C 0.113 3.887 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.023 0.977 40 H 0.024 0.976 41 H 0.360 0.640 42 H 0.260 0.740 43 H 0.400 0.600 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.106 0.894 48 H 0.223 0.777 49 H 0.100 0.900 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.247 4.113 -19.315 29.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.109 0.891 4 C -0.166 4.166 5 C -0.152 4.152 6 C -0.168 4.168 7 C 0.030 3.970 8 N -0.404 5.404 9 C -0.376 4.376 10 H 0.107 0.893 11 C -0.193 4.193 12 N -0.582 5.582 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.372 5.372 18 C 0.309 3.691 19 O -0.402 6.402 20 C -0.145 4.145 21 H 0.129 0.871 22 C -0.146 4.146 23 C -0.073 4.073 24 C -0.093 4.093 25 N -0.131 5.131 26 N -0.139 5.139 27 C -0.127 4.127 28 N -0.164 5.164 29 C -0.011 4.011 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.193 0.807 42 H 0.070 0.930 43 H 0.235 0.765 44 H 0.116 0.884 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.124 0.876 48 H 0.239 0.761 49 H 0.119 0.881 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.633 4.532 -20.668 29.554 hybrid contribution -0.951 -0.865 2.457 2.773 sum -21.585 3.667 -18.211 28.478 Atomic orbital electron populations 1.22177 0.95157 1.02173 1.02684 1.21098 0.93914 0.97780 0.83596 0.89068 1.21958 0.96842 1.00985 0.96836 1.21509 0.93927 1.01284 0.98442 1.21788 0.97368 1.00273 0.97413 1.20613 0.90659 0.95695 0.90038 1.42734 1.05281 1.66200 1.26146 1.19068 0.82217 1.29444 1.06906 0.89295 1.24697 0.95635 1.00697 0.98228 1.69701 1.11736 1.48105 1.28640 0.86519 0.80902 0.79775 0.81152 1.21071 1.21666 1.20373 1.46183 1.67112 1.14158 1.09756 1.20053 0.77998 0.87180 0.83910 1.90751 1.49472 1.15474 1.84461 1.21716 0.96438 1.00719 0.95673 0.87073 1.21573 1.05270 0.96857 0.90856 1.20270 0.92244 0.95719 0.99077 1.24861 1.00983 1.02347 0.81158 1.74090 1.03655 1.09336 1.26049 1.74526 1.17915 1.18888 1.02618 1.26413 0.92160 0.96387 0.97762 1.46108 1.25460 1.36553 1.08310 1.21950 0.94068 1.01317 0.83725 0.92441 0.91363 0.92187 0.91297 0.90043 0.91703 0.92164 0.92021 0.92146 0.95887 0.95780 0.80722 0.93009 0.76495 0.88406 0.90120 0.88510 0.87612 0.76116 0.88146 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.48 37.16 0.35 -0.66 16 2 C 0.14 0.93 2.57 -67.93 -0.17 0.75 16 3 H 0.09 0.78 7.58 -51.93 -0.39 0.39 16 4 C -0.13 -0.87 4.75 -26.73 -0.13 -1.00 16 5 C -0.11 -1.04 5.10 -26.73 -0.14 -1.18 16 6 C -0.13 -1.69 5.33 -26.73 -0.14 -1.83 16 7 C 0.16 2.84 6.26 -4.04 -0.03 2.82 16 8 N -0.76 -17.70 5.41 -59.91 -0.32 -18.02 16 9 C -0.25 -6.95 10.47 -15.06 -0.16 -7.11 16 10 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 11 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 12 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 13 Si 0.89 21.78 27.74 -169.99 -4.71 17.06 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 17 N -0.72 -3.83 4.43 -53.81 -0.24 -4.07 16 18 C 0.52 3.50 7.10 -10.99 -0.08 3.42 16 19 O -0.53 -5.56 15.49 5.55 0.09 -5.48 16 20 C -0.12 -0.56 2.54 -91.53 -0.23 -0.79 16 21 H 0.11 0.35 8.12 -51.93 -0.42 -0.07 16 22 C -0.11 -0.55 4.68 -26.42 -0.12 -0.68 16 23 C -0.03 -0.18 6.34 -27.59 -0.17 -0.36 16 24 C 0.17 1.58 7.75 -155.30 -1.20 0.37 16 25 N -0.29 -3.70 12.21 32.76 0.40 -3.30 16 26 N -0.30 -3.84 12.23 29.58 0.36 -3.47 16 27 C 0.16 1.42 12.83 -90.41 -1.16 0.26 16 28 N -0.47 -3.56 3.11 -115.52 -0.36 -3.92 16 29 C 0.11 0.52 6.14 -4.01 -0.02 0.50 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.50 7.75 -51.93 -0.40 0.09 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.36 8.15 5.53 -40.82 -0.23 7.92 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.40 1.29 8.25 -40.82 -0.34 0.95 16 44 H 0.10 0.50 7.79 -51.93 -0.40 0.10 16 45 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 46 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.22 1.15 8.06 -52.49 -0.42 0.73 16 49 H 0.10 0.50 8.12 -51.93 -0.42 0.08 16 50 H 0.10 0.26 7.87 -51.93 -0.41 -0.15 16 LS Contribution 403.41 15.07 6.08 6.08 Total: -1.00 -37.60 403.41 -9.96 -47.56 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.52 Total: 1.48 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -3.50 Total: -5.48 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: 0.61 Total: -61.23 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: 0.09 Total: -5.48 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.60 -9.96 -47.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176721450.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.248 kcal (2) G-P(sol) polarization free energy of solvation -37.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds