Wall clock time and date at job start Tue Mar 31 2020 20:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86790 * 120.00309 * 2 1 4 4 H 1.48504 * 109.47186 * 269.99721 * 3 2 1 5 5 H 1.48494 * 109.47505 * 30.00152 * 3 2 1 6 6 H 1.48507 * 109.47053 * 149.99793 * 3 2 1 7 7 C 1.38814 * 119.99379 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99981 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47152 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.53587 * 307.61149 * 11 10 9 13 13 C 1.54887 * 110.48548 * 70.22343 * 11 10 9 14 14 C 1.54893 * 102.74533 * 156.62347 * 13 11 10 15 15 C 1.54266 * 104.19500 * 322.05712 * 14 13 11 16 16 H 1.08996 * 110.03427 * 142.89930 * 15 14 13 17 17 N 1.46502 * 110.03291 * 264.33004 * 15 14 13 18 18 C 1.34782 * 119.99502 * 272.16583 * 17 15 14 19 19 O 1.21278 * 120.00044 * 359.97438 * 18 17 15 20 20 C 1.51492 * 119.99704 * 179.97438 * 18 17 15 21 21 C 1.52461 * 108.86845 * 61.48057 * 20 18 17 22 22 C 1.52135 * 112.69603 * 170.97427 * 21 20 18 23 23 C 1.52233 * 112.78349 * 315.28407 * 22 21 20 24 24 N 1.45834 * 112.46729 * 46.31915 * 23 22 21 25 25 C 1.45870 * 113.93404 * 70.88326 * 24 23 22 26 26 C 1.52267 * 112.28251 * 289.47649 * 25 24 23 27 27 C 1.52174 * 112.51982 * 312.82400 * 26 25 24 28 28 C 1.46473 * 112.01391 * 302.39852 * 24 23 22 29 29 C 1.53872 * 106.60044 * 23.61099 * 15 14 13 30 30 H 0.97008 * 119.99188 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00096 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47023 * 59.99950 * 10 9 7 33 33 H 1.08994 * 109.46876 * 300.00367 * 10 9 7 34 34 H 1.09001 * 110.75744 * 274.93249 * 13 11 10 35 35 H 1.09000 * 110.75698 * 38.31067 * 13 11 10 36 36 H 1.09002 * 110.48578 * 203.38190 * 14 13 11 37 37 H 1.08998 * 110.60430 * 80.79077 * 14 13 11 38 38 H 0.96993 * 120.00177 * 92.16663 * 17 15 14 39 39 H 1.09714 * 109.06578 * 292.45002 * 21 20 18 40 40 H 1.09712 * 109.04753 * 49.51209 * 21 20 18 41 41 H 1.10583 * 108.00917 * 196.15412 * 22 21 20 42 42 H 1.08746 * 110.87255 * 80.16001 * 22 21 20 43 43 H 1.09668 * 109.09960 * 284.97847 * 23 22 21 44 44 H 1.09651 * 109.12790 * 167.71181 * 23 22 21 45 45 H 1.09631 * 109.24934 * 168.25389 * 25 24 23 46 46 H 1.09625 * 109.28013 * 50.72157 * 25 24 23 47 47 H 1.10529 * 107.93389 * 193.69670 * 26 25 24 48 48 H 1.08684 * 110.81746 * 77.63420 * 26 25 24 49 49 H 1.09689 * 109.24468 * 284.38648 * 27 26 25 50 50 H 1.09675 * 109.24997 * 167.00005 * 27 26 25 51 51 H 1.08880 * 109.91190 * 305.33842 * 28 24 23 52 52 H 1.08879 * 109.94464 * 184.32698 * 28 24 23 53 53 H 1.09003 * 110.03622 * 240.71485 * 29 15 14 54 54 H 1.09003 * 110.07498 * 119.30332 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0016 10 6 2.0578 -3.6569 0.0027 11 6 1.0635 -4.8198 0.0031 12 1 0.3412 -4.7050 0.8114 13 6 0.3386 -4.9136 -1.3624 14 6 -0.1122 -6.3948 -1.4090 15 6 1.0592 -7.1670 -0.7675 16 1 0.6778 -7.9935 -0.1680 17 7 1.9563 -7.6739 -1.8090 18 6 1.7226 -8.8753 -2.3733 19 8 0.7701 -9.5370 -2.0187 20 6 2.6499 -9.3992 -3.4507 21 6 4.0489 -9.5539 -2.8647 22 6 5.0018 -10.2785 -3.8035 23 6 4.3773 -11.5122 -4.4403 24 7 3.0381 -11.2552 -4.9572 25 6 3.0147 -10.4107 -6.1463 26 6 3.3846 -8.9665 -5.8362 27 6 2.6451 -8.4233 -4.6222 28 6 2.1327 -10.7637 -3.9159 29 6 1.8067 -6.1656 0.1303 30 1 -0.4849 0.8402 -0.0004 31 1 0.3554 -2.3880 0.0016 32 1 2.6845 -3.7139 0.8928 33 1 2.6844 -3.7154 -0.8871 34 1 -0.5231 -4.2467 -1.3890 35 1 1.0248 -4.6928 -2.1800 36 1 -0.2617 -6.7158 -2.4399 37 1 -1.0248 -6.5364 -0.8301 38 1 2.7183 -7.1449 -2.0923 39 1 4.4535 -8.5600 -2.6358 40 1 3.9821 -10.1074 -1.9198 41 1 5.8781 -10.6071 -3.2144 42 1 5.3838 -9.6029 -4.5651 43 1 4.3287 -12.3152 -3.6950 44 1 5.0201 -11.8586 -5.2584 45 1 2.0121 -10.4377 -6.5891 46 1 3.7163 -10.8101 -6.8878 47 1 3.1081 -8.3491 -6.7102 48 1 4.4594 -8.8607 -5.7149 49 1 1.6072 -8.2023 -4.9001 50 1 3.1104 -7.4815 -4.3069 51 1 2.1221 -11.4568 -3.0763 52 1 1.1269 -10.6562 -4.3188 53 1 2.8369 -6.0567 -0.2088 54 1 1.7887 -6.5057 1.1658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507401978.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:15 Heat of formation + Delta-G solvation = -66.186844 kcal Electronic energy + Delta-G solvation = -30372.569187 eV Core-core repulsion = 26534.911565 eV Total energy + Delta-G solvation = -3837.657622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.20960 -40.40560 -38.98428 -36.46245 -35.07392 -34.12427 -34.03395 -32.77738 -31.76955 -30.15421 -29.07694 -27.37319 -26.31151 -25.08195 -24.19305 -23.90817 -22.43287 -21.87146 -21.22738 -20.71521 -19.46437 -19.06938 -18.21539 -17.51911 -16.80010 -16.66585 -16.46720 -16.02648 -15.84780 -15.76663 -15.52550 -15.28533 -15.02020 -14.71331 -14.58577 -14.34085 -14.16102 -13.96367 -13.61276 -13.50057 -13.45810 -13.16899 -12.79858 -12.69266 -12.56737 -12.48442 -12.42402 -12.35462 -12.18245 -12.08958 -11.95957 -11.93932 -11.82930 -11.65550 -11.62234 -11.55156 -11.47603 -10.90894 -10.75633 -10.61122 -10.05798 -9.02323 -8.98177 -7.94866 -5.23148 1.46914 1.48599 1.57053 1.60753 2.15754 2.56196 3.04031 3.38661 3.46630 3.55575 3.58452 3.62574 3.63939 3.88683 3.96883 4.05689 4.09696 4.15899 4.20842 4.22961 4.40168 4.43077 4.48945 4.49226 4.51977 4.52405 4.58759 4.67305 4.68640 4.77040 4.82591 4.90982 4.94819 4.97986 4.99039 5.00463 5.05515 5.08347 5.09018 5.10595 5.13762 5.16324 5.22561 5.28028 5.36064 5.45895 5.46914 5.54222 5.61665 6.16820 6.27730 6.38664 6.53583 7.22949 7.33850 8.11769 8.33997 9.28894 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.018996 B = 0.002278 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.668455 B =12287.593848 C =12847.164319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.745 5.745 10 C 0.161 3.839 11 C -0.091 4.091 12 H 0.066 0.934 13 C -0.105 4.105 14 C -0.124 4.124 15 C 0.148 3.852 16 H 0.082 0.918 17 N -0.708 5.708 18 C 0.521 3.479 19 O -0.580 6.580 20 C -0.095 4.095 21 C -0.099 4.099 22 C -0.147 4.147 23 C 0.063 3.937 24 N -0.553 5.553 25 C 0.063 3.937 26 C -0.147 4.147 27 C -0.101 4.101 28 C 0.096 3.904 29 C -0.109 4.109 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.019 0.981 33 H 0.024 0.976 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.409 0.591 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.051 0.949 50 H 0.075 0.925 51 H 0.068 0.932 52 H 0.064 0.936 53 H 0.086 0.914 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.177 -25.081 -10.933 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.388 5.388 10 C 0.035 3.965 11 C -0.110 4.110 12 H 0.085 0.915 13 C -0.143 4.143 14 C -0.162 4.162 15 C 0.043 3.957 16 H 0.100 0.900 17 N -0.359 5.359 18 C 0.308 3.692 19 O -0.459 6.459 20 C -0.100 4.100 21 C -0.137 4.137 22 C -0.186 4.186 23 C -0.065 4.065 24 N -0.273 5.273 25 C -0.064 4.064 26 C -0.186 4.186 27 C -0.139 4.139 28 C -0.033 4.033 29 C -0.147 4.147 30 H 0.059 0.941 31 H 0.205 0.795 32 H 0.037 0.963 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.246 0.754 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.090 0.910 48 H 0.099 0.901 49 H 0.070 0.930 50 H 0.093 0.907 51 H 0.087 0.913 52 H 0.082 0.918 53 H 0.105 0.895 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.526 -25.897 -10.817 29.974 hybrid contribution 0.057 2.357 0.379 2.388 sum 10.582 -23.540 -10.438 27.841 Atomic orbital electron populations 1.69828 1.06656 1.26004 1.59689 1.25580 0.96396 1.01162 1.03898 0.85141 0.77720 0.79483 0.77437 1.21382 1.22328 1.19343 1.19649 0.91506 0.85434 1.40911 0.90607 1.42595 1.05653 1.01255 1.89293 1.20855 0.93636 0.84517 0.97536 1.22052 0.97185 0.94024 0.97764 0.91515 1.22383 0.99453 0.95601 0.96863 1.22690 0.98175 0.94621 1.00744 1.21479 0.89892 0.95954 0.88413 0.90033 1.46181 1.30657 1.19437 1.39639 1.21203 0.85105 0.80656 0.82224 1.90676 1.32192 1.58859 1.64175 1.21251 0.96062 0.98745 0.93931 1.21287 0.91778 1.02124 0.98507 1.21943 0.98377 0.98455 0.99844 1.21854 0.88050 0.96592 1.00003 1.60235 1.10592 1.49455 1.07035 1.21849 1.02686 0.90125 0.91788 1.21952 1.01383 0.97877 0.97407 1.21302 1.01105 0.97486 0.93972 1.21603 0.95630 0.91891 0.94144 1.22338 0.99678 0.92287 1.00395 0.94078 0.79517 0.96298 0.95832 0.93375 0.91885 0.92135 0.90948 0.75423 0.90455 0.92434 0.90532 0.90378 0.91261 0.89377 0.91546 0.89277 0.90957 0.90085 0.93025 0.90666 0.91316 0.91752 0.89545 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.75 13.06 21.65 0.28 -59.46 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.24 -13.52 9.99 84.03 0.84 -12.68 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.75 -37.57 5.49 -343.44 -1.89 -39.46 16 10 C 0.16 6.12 5.54 86.38 0.48 6.60 16 11 C -0.09 -2.75 2.89 -9.72 -0.03 -2.78 16 12 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 13 C -0.11 -3.16 6.19 31.89 0.20 -2.96 16 14 C -0.12 -3.18 6.54 31.67 0.21 -2.98 16 15 C 0.15 3.36 3.25 45.71 0.15 3.50 16 16 H 0.08 2.03 7.57 -2.39 -0.02 2.01 16 17 N -0.71 -13.93 4.84 -438.20 -2.12 -16.05 16 18 C 0.52 11.71 6.35 87.91 0.56 12.27 16 19 O -0.58 -17.71 15.57 -3.02 -0.05 -17.76 16 20 C -0.09 -1.57 0.57 -52.97 -0.03 -1.60 16 21 C -0.10 -1.28 4.52 30.13 0.14 -1.14 16 22 C -0.15 -1.43 5.12 30.06 0.15 -1.28 16 23 C 0.06 0.70 5.76 86.25 0.50 1.20 16 24 N -0.55 -8.22 4.79 -902.26 -4.32 -12.54 16 25 C 0.06 0.77 5.77 86.26 0.50 1.26 16 26 C -0.15 -1.64 5.14 30.08 0.15 -1.49 16 27 C -0.10 -1.47 4.50 30.15 0.14 -1.33 16 28 C 0.10 1.82 4.18 86.44 0.36 2.18 16 29 C -0.11 -2.41 6.14 31.32 0.19 -2.22 16 30 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 31 H 0.37 20.18 7.64 -92.71 -0.71 19.47 16 32 H 0.02 0.72 8.14 -2.38 -0.02 0.71 16 33 H 0.02 0.88 8.02 -2.39 -0.02 0.86 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.91 7.96 -2.39 -0.02 1.89 16 36 H 0.06 1.61 8.04 -2.39 -0.02 1.59 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.41 6.41 7.43 -92.71 -0.69 5.73 16 39 H 0.08 0.84 7.85 -2.01 -0.02 0.82 16 40 H 0.06 0.85 8.14 -2.01 -0.02 0.84 16 41 H 0.08 0.60 8.27 -1.54 -0.01 0.59 16 42 H 0.08 0.66 5.72 -2.52 -0.01 0.64 16 43 H 0.07 0.83 8.20 -2.03 -0.02 0.81 16 44 H 0.09 0.75 8.10 -2.04 -0.02 0.73 16 45 H 0.07 0.89 8.19 -2.05 -0.02 0.88 16 46 H 0.09 0.82 8.10 -2.05 -0.02 0.80 16 47 H 0.07 0.74 8.27 -1.57 -0.01 0.72 16 48 H 0.08 0.75 5.68 -2.55 -0.01 0.74 16 49 H 0.05 0.91 8.14 -2.02 -0.02 0.90 16 50 H 0.07 0.98 7.76 -2.03 -0.02 0.96 16 51 H 0.07 1.48 8.07 -2.45 -0.02 1.46 16 52 H 0.06 1.44 8.08 -2.45 -0.02 1.42 16 53 H 0.09 1.69 7.31 -2.39 -0.02 1.67 16 54 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -68.64 401.95 -1.58 -70.22 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: -0.48 Total: 34.51 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 4.97 Total: -7.47 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -8.05 Total: -127.52 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.05 Total: -17.76 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -68.64 -1.58 -70.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507401978.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.035 kcal (2) G-P(sol) polarization free energy of solvation -68.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds