Wall clock time and date at job start Tue Mar 31 2020 19:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35312 * 125.86654 * 2 1 4 4 C 1.35347 * 106.17387 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.75412 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47185 * 125.00236 * 5 4 3 7 7 C 1.50700 * 109.47206 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00198 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00126 * 180.27502 * 7 6 5 10 10 C 1.46497 * 120.00117 * 179.72067 * 9 7 6 11 11 C 1.52998 * 109.47254 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47494 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47437 * 174.92552 * 12 11 10 14 14 H 1.08998 * 109.87308 * 304.34523 * 13 12 11 15 15 C 1.54321 * 109.87934 * 65.36218 * 13 12 11 16 16 C 1.55160 * 102.94108 * 141.60991 * 15 13 12 17 17 C 1.54911 * 101.58274 * 324.49601 * 16 15 13 18 18 N 1.47020 * 109.88215 * 183.32919 * 13 12 11 19 19 C 1.36937 * 125.65110 * 61.60730 * 18 13 12 20 20 H 1.08007 * 119.99442 * 14.16373 * 19 18 13 21 21 C 1.38804 * 120.00662 * 194.15823 * 19 18 13 22 22 N 1.31628 * 119.99427 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00489 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47053 * 59.99841 * 23 21 19 25 25 H 1.48499 * 109.47346 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47157 * 300.00267 * 23 21 19 27 27 N 1.33774 * 106.49841 * 0.26456 * 4 3 2 28 28 N 1.28636 * 108.88410 * 359.56068 * 27 4 3 29 29 H 1.09002 * 109.47195 * 90.00066 * 1 2 3 30 30 H 1.08998 * 109.47566 * 209.99749 * 1 2 3 31 31 H 1.08998 * 109.47143 * 330.00143 * 1 2 3 32 32 H 1.08001 * 126.91359 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.46949 * 5.00700 * 5 4 3 34 34 H 1.08994 * 109.47533 * 245.00494 * 5 4 3 35 35 H 1.08995 * 109.47010 * 60.00156 * 6 5 4 36 36 H 1.09001 * 109.47007 * 300.00190 * 6 5 4 37 37 H 0.96998 * 119.99892 * 359.72589 * 9 7 6 38 38 H 1.09001 * 109.47300 * 300.00613 * 10 9 7 39 39 H 1.09005 * 109.46787 * 60.00412 * 10 9 7 40 40 H 1.09001 * 109.47426 * 300.00484 * 11 10 9 41 41 H 1.08997 * 109.47138 * 60.00231 * 11 10 9 42 42 H 1.08998 * 109.46661 * 294.92761 * 12 11 10 43 43 H 1.09000 * 109.47328 * 54.92113 * 12 11 10 44 44 H 1.09001 * 110.72391 * 259.97033 * 15 13 12 45 45 H 1.09000 * 110.72240 * 23.24982 * 15 13 12 46 46 H 1.09006 * 111.00476 * 82.57310 * 16 15 13 47 47 H 1.09004 * 111.00395 * 206.38034 * 16 15 13 48 48 H 1.09004 * 110.36388 * 155.84299 * 17 16 15 49 49 H 1.08991 * 110.36706 * 278.16883 * 17 16 15 50 50 H 0.97000 * 119.99293 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6405 0.0006 5 6 4.7880 1.4734 0.0003 6 6 5.6701 1.0665 1.1823 7 6 6.9257 1.8999 1.1824 8 8 7.0983 2.7365 0.3215 9 7 7.8597 1.7113 2.1356 10 6 9.0830 2.5172 2.1321 11 6 9.9680 2.1062 3.3106 12 6 11.2454 2.9483 3.3074 13 6 12.0712 2.6271 4.5546 14 1 11.4670 2.7808 5.4487 15 6 12.5613 1.1649 4.4973 16 6 13.9950 1.2557 5.0837 17 6 14.4639 2.6312 4.5471 18 7 13.2618 3.4884 4.6015 19 6 13.2552 4.8555 4.6804 20 1 12.3462 5.3769 4.9420 21 6 14.4167 5.5711 4.4245 22 7 15.5243 4.9356 4.1053 23 14 14.4075 7.4360 4.5315 24 1 14.0258 7.8511 5.9053 25 1 15.7620 7.9566 4.2160 26 1 13.4276 7.9828 3.5590 27 7 3.4576 -0.6952 -0.0050 28 7 2.2192 -1.0431 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9381 2.1282 0.0004 33 1 4.5249 2.5275 0.0892 34 1 5.3310 1.3118 -0.9308 35 1 5.9332 0.0125 1.0935 36 1 5.1271 1.2282 2.1135 37 1 7.7218 1.0420 2.8240 38 1 9.6225 2.3548 1.1990 39 1 8.8235 3.5721 2.2228 40 1 9.4287 2.2683 4.2439 41 1 10.2275 1.0515 3.2195 42 1 11.8293 2.7190 2.4160 43 1 10.9832 4.0062 3.3077 44 1 11.9324 0.5228 5.1141 45 1 12.5876 0.8070 3.4681 46 1 13.9726 1.2484 6.1735 47 1 14.6246 0.4517 4.7026 48 1 15.2484 3.0395 5.1843 49 1 14.8182 2.5372 3.5207 50 1 16.3359 5.4358 3.9260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663127879.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:46 Heat of formation + Delta-G solvation = 65.992709 kcal Electronic energy + Delta-G solvation = -27525.641304 eV Core-core repulsion = 23590.175074 eV Total energy + Delta-G solvation = -3935.466230 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.64537 -39.75368 -37.80184 -35.76550 -35.32430 -33.80113 -32.90975 -32.11591 -30.62483 -29.35468 -28.47491 -27.97940 -25.59937 -24.59096 -23.62584 -22.50497 -21.52057 -21.34645 -20.27642 -20.02804 -19.08663 -17.71328 -17.14735 -16.90845 -16.67840 -16.03966 -15.83685 -15.30828 -15.03083 -14.81750 -14.44826 -14.26505 -13.99899 -13.81432 -13.63560 -13.46808 -12.95951 -12.77254 -12.55285 -12.24721 -12.00088 -11.95904 -11.87256 -11.69813 -11.57449 -11.39015 -11.04462 -10.98732 -10.77677 -10.68905 -10.50678 -10.47167 -10.08555 -9.96686 -9.92201 -9.72334 -9.58297 -9.56892 -9.48146 -9.04661 -8.52974 -6.72165 -5.69215 -3.03936 1.16409 1.91058 2.13240 2.61126 3.16882 3.43190 3.47838 3.48607 3.86026 4.08997 4.37252 4.41407 4.53344 4.57548 4.66961 4.72217 4.89784 4.99874 5.09026 5.22892 5.25895 5.33955 5.44115 5.49238 5.64809 5.65364 5.67397 5.75659 5.78484 5.89885 5.91137 6.02803 6.09880 6.10642 6.17438 6.32469 6.39644 6.46045 6.48677 6.61858 6.75182 6.77503 7.00964 7.22640 7.46724 7.59695 7.67774 7.85038 8.11139 8.19082 8.34645 9.25460 9.87410 10.57330 11.43226 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.001591 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.688299 B =17598.796907 C =18540.361229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.296 5.296 3 C -0.049 4.049 4 C -0.017 4.017 5 C -0.016 4.016 6 C -0.134 4.134 7 C 0.510 3.490 8 O -0.544 6.544 9 N -0.730 5.730 10 C 0.117 3.883 11 C -0.127 4.127 12 C -0.122 4.122 13 C 0.162 3.838 14 H 0.030 0.970 15 C -0.124 4.124 16 C -0.150 4.150 17 C 0.172 3.828 18 N -0.597 5.597 19 C -0.226 4.226 20 H 0.073 0.927 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.284 1.284 27 N -0.264 5.264 28 N -0.087 5.087 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.192 0.808 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.400 0.600 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.023 0.977 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.901 -10.905 -5.330 31.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.090 5.090 3 C -0.199 4.199 4 C -0.155 4.155 5 C -0.056 4.056 6 C -0.175 4.175 7 C 0.297 3.703 8 O -0.421 6.421 9 N -0.381 5.381 10 C -0.006 4.006 11 C -0.166 4.166 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.189 4.189 17 C 0.047 3.953 18 N -0.321 5.321 19 C -0.354 4.354 20 H 0.091 0.909 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 N -0.131 5.131 28 N -0.067 5.067 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.209 0.791 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.234 0.766 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.088 0.912 49 H 0.042 0.958 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -28.589 -11.651 -5.974 31.444 hybrid contribution -0.345 1.882 0.304 1.938 sum -28.933 -9.768 -5.670 31.060 Atomic orbital electron populations 1.22277 0.72686 1.05994 1.05061 1.47249 1.09440 1.04985 1.47319 1.23445 0.90871 0.94792 1.10802 1.22066 0.95389 0.91481 1.06524 1.19602 0.89312 0.97437 0.99232 1.21585 0.94032 1.01379 1.00462 1.20638 0.84782 0.83725 0.81202 1.90717 1.78928 1.35326 1.37131 1.46131 1.20422 1.40879 1.30668 1.21500 0.84102 0.95259 0.99710 1.21833 0.96957 1.00835 0.96932 1.22025 0.93954 0.99617 1.00619 1.20920 0.89594 0.89712 0.94314 0.95232 1.22589 0.97026 0.96537 1.00055 1.23009 0.96003 1.00153 0.99733 1.21463 0.90099 0.85389 0.98311 1.44611 0.99732 1.01729 1.86023 1.18915 0.96452 0.80339 1.39718 0.90875 1.24883 0.96349 0.97887 1.01120 1.69932 1.00171 1.33674 1.52773 0.86257 0.76663 0.85402 0.77796 1.21214 1.21645 1.21106 1.75062 1.09381 1.12074 1.16564 1.78327 0.96481 1.12136 1.19759 0.89038 0.87989 0.88225 0.79135 0.89248 0.89148 0.88059 0.89004 0.76634 0.91505 0.91465 0.91823 0.91701 0.92215 0.91728 0.92655 0.92032 0.92522 0.92568 0.91234 0.95848 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.12 11.39 59.85 0.68 0.80 16 2 N -0.30 -1.98 3.74 -68.06 -0.25 -2.24 16 3 C -0.05 -0.31 11.54 -17.05 -0.20 -0.51 16 4 C -0.02 -0.15 6.50 -82.78 -0.54 -0.69 16 5 C -0.02 -0.14 5.08 -27.88 -0.14 -0.28 16 6 C -0.13 -1.13 5.68 -27.88 -0.16 -1.29 16 7 C 0.51 5.97 7.83 -10.98 -0.09 5.88 16 8 O -0.54 -8.55 15.98 5.56 0.09 -8.46 16 9 N -0.73 -7.82 5.56 -60.29 -0.33 -8.15 16 10 C 0.12 1.54 5.67 -4.04 -0.02 1.52 16 11 C -0.13 -1.66 5.07 -26.73 -0.14 -1.80 16 12 C -0.12 -2.18 4.69 -26.73 -0.13 -2.30 16 13 C 0.16 3.25 3.18 -66.96 -0.21 3.03 16 14 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 15 C -0.12 -2.13 5.61 -24.90 -0.14 -2.27 16 16 C -0.15 -2.85 7.08 -24.58 -0.17 -3.03 16 17 C 0.17 4.20 5.44 -2.35 -0.01 4.19 16 18 N -0.60 -15.08 3.14 -162.32 -0.51 -15.58 16 19 C -0.23 -6.25 9.75 -15.06 -0.15 -6.39 16 20 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 21 C -0.01 -0.16 5.47 -17.43 -0.10 -0.26 16 22 N -0.92 -27.12 10.58 55.49 0.59 -26.53 16 23 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 N -0.26 -3.03 12.40 33.29 0.41 -2.62 16 28 N -0.09 -0.91 13.17 60.35 0.79 -0.12 16 29 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16 31 H 0.10 -0.10 8.14 -51.93 -0.42 -0.53 16 32 H 0.19 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.40 3.15 8.47 -40.82 -0.35 2.80 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.78 7.57 -51.93 -0.39 0.38 16 42 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 43 H 0.06 1.27 7.89 -51.93 -0.41 0.86 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.01 7.79 -51.93 -0.40 0.61 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 49 H 0.02 0.62 8.08 -51.93 -0.42 0.20 16 50 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 408.28 15.07 6.15 6.15 Total: -1.00 -36.31 408.28 -8.22 -44.53 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -8.63 Total: -0.82 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.50 Total: -3.38 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.70 Total: -55.24 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.31 -8.22 -44.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663127879.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.524 kcal (2) G-P(sol) polarization free energy of solvation -36.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds