Wall clock time and date at job start Tue Mar 31 2020 19:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35312 * 125.86654 * 2 1 4 4 C 1.35347 * 106.17387 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.75412 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47185 * 125.00236 * 5 4 3 7 7 C 1.50700 * 109.47206 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00198 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00126 * 180.27502 * 7 6 5 10 10 C 1.46497 * 120.00117 * 179.72067 * 9 7 6 11 11 C 1.52998 * 109.47254 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47494 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47437 * 174.92552 * 12 11 10 14 14 H 1.08998 * 109.87308 * 304.34523 * 13 12 11 15 15 C 1.54321 * 109.87934 * 65.36218 * 13 12 11 16 16 C 1.55160 * 102.94108 * 141.60991 * 15 13 12 17 17 C 1.54911 * 101.58274 * 324.49601 * 16 15 13 18 18 N 1.47020 * 109.88215 * 183.32919 * 13 12 11 19 19 C 1.36937 * 125.65110 * 61.60730 * 18 13 12 20 20 H 1.08007 * 119.99442 * 14.16373 * 19 18 13 21 21 C 1.38804 * 120.00662 * 194.15823 * 19 18 13 22 22 N 1.31628 * 119.99427 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00489 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47053 * 59.99841 * 23 21 19 25 25 H 1.48499 * 109.47346 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47157 * 300.00267 * 23 21 19 27 27 N 1.33774 * 106.49841 * 0.26456 * 4 3 2 28 28 N 1.28636 * 108.88410 * 359.56068 * 27 4 3 29 29 H 1.09002 * 109.47195 * 90.00066 * 1 2 3 30 30 H 1.08998 * 109.47566 * 209.99749 * 1 2 3 31 31 H 1.08998 * 109.47143 * 330.00143 * 1 2 3 32 32 H 1.08001 * 126.91359 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.46949 * 5.00700 * 5 4 3 34 34 H 1.08994 * 109.47533 * 245.00494 * 5 4 3 35 35 H 1.08995 * 109.47010 * 60.00156 * 6 5 4 36 36 H 1.09001 * 109.47007 * 300.00190 * 6 5 4 37 37 H 0.96998 * 119.99892 * 359.72589 * 9 7 6 38 38 H 1.09001 * 109.47300 * 300.00613 * 10 9 7 39 39 H 1.09005 * 109.46787 * 60.00412 * 10 9 7 40 40 H 1.09001 * 109.47426 * 300.00484 * 11 10 9 41 41 H 1.08997 * 109.47138 * 60.00231 * 11 10 9 42 42 H 1.08998 * 109.46661 * 294.92761 * 12 11 10 43 43 H 1.09000 * 109.47328 * 54.92113 * 12 11 10 44 44 H 1.09001 * 110.72391 * 259.97033 * 15 13 12 45 45 H 1.09000 * 110.72240 * 23.24982 * 15 13 12 46 46 H 1.09006 * 111.00476 * 82.57310 * 16 15 13 47 47 H 1.09004 * 111.00395 * 206.38034 * 16 15 13 48 48 H 1.09004 * 110.36388 * 155.84299 * 17 16 15 49 49 H 1.08991 * 110.36706 * 278.16883 * 17 16 15 50 50 H 0.97000 * 119.99293 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6405 0.0006 5 6 4.7880 1.4734 0.0003 6 6 5.6701 1.0665 1.1823 7 6 6.9257 1.8999 1.1824 8 8 7.0983 2.7365 0.3215 9 7 7.8597 1.7113 2.1356 10 6 9.0830 2.5172 2.1321 11 6 9.9680 2.1062 3.3106 12 6 11.2454 2.9483 3.3074 13 6 12.0712 2.6271 4.5546 14 1 11.4670 2.7808 5.4487 15 6 12.5613 1.1649 4.4973 16 6 13.9950 1.2557 5.0837 17 6 14.4639 2.6312 4.5471 18 7 13.2618 3.4884 4.6015 19 6 13.2552 4.8555 4.6804 20 1 12.3462 5.3769 4.9420 21 6 14.4167 5.5711 4.4245 22 7 15.5243 4.9356 4.1053 23 14 14.4075 7.4360 4.5315 24 1 14.0258 7.8511 5.9053 25 1 15.7620 7.9566 4.2160 26 1 13.4276 7.9828 3.5590 27 7 3.4576 -0.6952 -0.0050 28 7 2.2192 -1.0431 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9381 2.1282 0.0004 33 1 4.5249 2.5275 0.0892 34 1 5.3310 1.3118 -0.9308 35 1 5.9332 0.0125 1.0935 36 1 5.1271 1.2282 2.1135 37 1 7.7218 1.0420 2.8240 38 1 9.6225 2.3548 1.1990 39 1 8.8235 3.5721 2.2228 40 1 9.4287 2.2683 4.2439 41 1 10.2275 1.0515 3.2195 42 1 11.8293 2.7190 2.4160 43 1 10.9832 4.0062 3.3077 44 1 11.9324 0.5228 5.1141 45 1 12.5876 0.8070 3.4681 46 1 13.9726 1.2484 6.1735 47 1 14.6246 0.4517 4.7026 48 1 15.2484 3.0395 5.1843 49 1 14.8182 2.5372 3.5207 50 1 16.3359 5.4358 3.9260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663127879.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:45 Heat of formation + Delta-G solvation = 40.708266 kcal Electronic energy + Delta-G solvation = -27526.737720 eV Core-core repulsion = 23590.175074 eV Total energy + Delta-G solvation = -3936.562646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.20002 -40.72846 -39.43946 -36.75070 -36.03635 -34.66515 -34.42249 -33.59583 -31.38250 -31.14778 -29.47334 -28.66301 -26.77852 -26.29150 -24.90971 -23.01056 -22.69813 -22.05030 -21.84117 -21.18071 -20.62222 -18.69692 -18.28085 -17.73653 -17.50006 -17.03065 -16.89655 -16.81704 -16.12270 -15.94299 -15.67676 -15.60804 -15.07387 -14.74561 -14.29171 -14.06983 -14.02667 -13.76735 -13.67980 -13.61272 -13.46511 -13.15467 -13.06851 -12.95888 -12.69669 -12.63071 -12.57550 -12.27498 -12.22136 -12.02948 -11.80716 -11.65460 -11.64541 -11.52243 -11.29860 -11.14522 -10.99582 -10.84810 -10.63451 -10.12192 -10.04689 -8.76291 -7.83645 -5.19136 0.66232 1.44902 1.47878 1.48457 1.53851 1.60005 1.68894 2.27140 2.51424 3.34592 3.37780 3.70201 3.75422 3.85323 3.98962 4.03012 4.06121 4.16940 4.19769 4.25525 4.30856 4.35567 4.37773 4.43786 4.46514 4.64851 4.65732 4.68016 4.79932 4.83946 4.84267 4.89339 5.01412 5.04743 5.06392 5.14933 5.16368 5.25317 5.26920 5.36793 5.48531 5.52280 5.55315 5.69158 5.70669 5.72573 5.80811 6.29072 6.61806 7.13923 7.31375 7.51737 7.83890 8.51877 9.27856 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.001591 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.688299 B =17598.796907 C =18540.361229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.032 4.032 4 C -0.037 4.037 5 C -0.011 4.011 6 C -0.121 4.121 7 C 0.509 3.491 8 O -0.588 6.588 9 N -0.717 5.717 10 C 0.124 3.876 11 C -0.108 4.108 12 C -0.112 4.112 13 C 0.151 3.849 14 H 0.036 0.964 15 C -0.111 4.111 16 C -0.137 4.137 17 C 0.174 3.826 18 N -0.620 5.620 19 C -0.231 4.231 20 H 0.076 0.924 21 C -0.066 4.066 22 N -0.950 5.950 23 Si 0.971 3.029 24 H -0.276 1.276 25 H -0.295 1.295 26 H -0.280 1.280 27 N -0.303 5.303 28 N -0.125 5.125 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.131 0.869 32 H 0.231 0.769 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.417 0.583 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.039 0.961 43 H 0.037 0.963 44 H 0.097 0.903 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.030 0.970 49 H -0.009 1.009 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.183 -11.798 -4.306 34.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.083 5.083 3 C -0.184 4.184 4 C -0.176 4.176 5 C -0.051 4.051 6 C -0.161 4.161 7 C 0.297 3.703 8 O -0.469 6.469 9 N -0.370 5.370 10 C 0.000 4.000 11 C -0.146 4.146 12 C -0.153 4.153 13 C 0.045 3.955 14 H 0.054 0.946 15 C -0.149 4.149 16 C -0.176 4.176 17 C 0.048 3.952 18 N -0.344 5.344 19 C -0.361 4.361 20 H 0.094 0.906 21 C -0.259 4.259 22 N -0.599 5.599 23 Si 0.800 3.200 24 H -0.202 1.202 25 H -0.222 1.222 26 H -0.206 1.206 27 N -0.169 5.169 28 N -0.104 5.104 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.149 0.851 32 H 0.248 0.752 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.254 0.746 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.115 0.885 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.049 0.951 49 H 0.009 0.991 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -31.937 -12.614 -4.917 34.688 hybrid contribution 0.576 2.179 -0.019 2.254 sum -31.361 -10.435 -4.935 33.418 Atomic orbital electron populations 1.22738 0.69840 1.07822 1.06610 1.47664 1.11025 1.04290 1.45284 1.24030 0.89917 0.96231 1.08212 1.22196 0.96511 0.90953 1.07963 1.19513 0.89271 0.97948 0.98345 1.21529 0.92396 1.00634 1.01555 1.21212 0.85509 0.83212 0.80338 1.90701 1.79903 1.37412 1.38872 1.45965 1.19306 1.40712 1.30995 1.21227 0.84985 0.94781 0.98998 1.21629 0.94448 1.00930 0.97601 1.21824 0.95795 0.98959 0.98698 1.21218 0.88223 0.90896 0.95124 0.94644 1.22586 0.96006 0.94910 1.01384 1.22881 0.97522 0.97031 1.00137 1.21269 0.89463 0.88485 0.95933 1.44930 1.01877 1.01647 1.85983 1.19267 0.96332 0.82084 1.38414 0.90600 1.25673 0.96237 1.02126 1.01902 1.70151 1.00454 1.34811 1.54466 0.85257 0.76234 0.80435 0.78081 1.20204 1.22167 1.20582 1.74986 1.10368 1.13583 1.17945 1.78238 0.96654 1.13718 1.21785 0.87577 0.87599 0.85071 0.75221 0.88344 0.91124 0.87657 0.86695 0.74552 0.93232 0.93225 0.89972 0.89349 0.94212 0.94447 0.88488 0.91133 0.91763 0.90129 0.95138 0.99124 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.01 11.39 127.77 1.46 1.46 16 2 N -0.29 -3.27 3.74 -369.23 -1.38 -4.65 16 3 C -0.03 -0.33 11.54 83.49 0.96 0.63 16 4 C -0.04 -0.62 6.50 41.59 0.27 -0.35 16 5 C -0.01 -0.18 5.08 29.85 0.15 -0.03 16 6 C -0.12 -1.85 5.68 29.85 0.17 -1.68 16 7 C 0.51 11.34 7.83 87.66 0.69 12.03 16 8 O -0.59 -18.52 15.98 -3.03 -0.05 -18.57 16 9 N -0.72 -13.94 5.56 -463.06 -2.57 -16.52 16 10 C 0.12 3.14 5.67 86.38 0.49 3.63 16 11 C -0.11 -2.55 5.07 30.59 0.16 -2.40 16 12 C -0.11 -3.96 4.69 30.59 0.14 -3.81 16 13 C 0.15 5.86 3.18 45.34 0.14 6.00 16 14 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 15 C -0.11 -3.44 5.61 31.78 0.18 -3.27 16 16 C -0.14 -4.95 7.08 31.99 0.23 -4.72 16 17 C 0.17 8.70 5.44 86.79 0.47 9.17 16 18 N -0.62 -31.77 3.14 -667.45 -2.09 -33.87 16 19 C -0.23 -13.09 9.75 84.03 0.82 -12.27 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 21 C -0.07 -3.85 5.47 84.86 0.46 -3.39 16 22 N -0.95 -58.47 10.58 21.65 0.23 -58.24 16 23 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 27 N -0.30 -6.85 12.40 -48.60 -0.60 -7.45 16 28 N -0.12 -2.53 13.17 37.02 0.49 -2.04 16 29 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.13 -0.80 8.14 -2.39 -0.02 -0.81 16 32 H 0.23 0.24 8.06 -2.91 -0.02 0.22 16 33 H 0.10 1.38 8.08 -2.39 -0.02 1.36 16 34 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 35 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.42 5.20 8.47 -92.71 -0.79 4.42 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 1.75 7.57 -2.39 -0.02 1.73 16 42 H 0.04 1.53 8.07 -2.39 -0.02 1.51 16 43 H 0.04 1.49 7.89 -2.39 -0.02 1.47 16 44 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.07 2.09 7.79 -2.39 -0.02 2.07 16 46 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 47 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 48 H 0.03 1.73 6.90 -2.38 -0.02 1.71 16 49 H -0.01 -0.51 8.08 -2.39 -0.02 -0.53 16 50 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -84.64 408.28 2.97 -81.67 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.14 Total: 9.79 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 6.79 Total: 1.01 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -5.93 Total: -122.77 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -84.64 2.97 -81.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663127879.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.381 kcal (2) G-P(sol) polarization free energy of solvation -84.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds