Wall clock time and date at job start Tue Mar 31 2020 19:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35312 * 125.86219 * 2 1 4 4 C 1.35349 * 106.17036 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.75118 * 179.74147 * 4 3 2 6 6 C 1.52998 * 109.47534 * 124.99502 * 5 4 3 7 7 C 1.50700 * 109.47241 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00391 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99728 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99947 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47460 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47358 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47293 * 185.06631 * 12 11 10 14 14 H 1.09000 * 109.87063 * 53.63580 * 13 12 11 15 15 C 1.54320 * 109.88395 * 292.46092 * 13 12 11 16 16 C 1.55155 * 102.94511 * 218.39008 * 15 13 12 17 17 C 1.54913 * 101.58058 * 35.49812 * 16 15 13 18 18 N 1.47018 * 109.88374 * 174.65155 * 13 12 11 19 19 C 1.36939 * 125.65058 * 298.32304 * 18 13 12 20 20 H 1.07999 * 119.99703 * 345.74516 * 19 18 13 21 21 C 1.38808 * 120.00430 * 165.74132 * 19 18 13 22 22 N 1.31624 * 119.99846 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00247 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47659 * 89.99835 * 23 21 19 25 25 H 1.48502 * 109.46934 * 210.00250 * 23 21 19 26 26 H 1.48504 * 109.46949 * 329.99933 * 23 21 19 27 27 N 1.33770 * 106.49814 * 359.97438 * 4 3 2 28 28 N 1.28635 * 108.88733 * 0.02562 * 27 4 3 29 29 H 1.08995 * 109.46861 * 90.00217 * 1 2 3 30 30 H 1.09005 * 109.46553 * 209.99896 * 1 2 3 31 31 H 1.08995 * 109.46956 * 329.99721 * 1 2 3 32 32 H 1.07999 * 126.91803 * 359.97438 * 3 2 1 33 33 H 1.09007 * 109.47143 * 244.99977 * 5 4 3 34 34 H 1.08998 * 109.47371 * 4.99338 * 5 4 3 35 35 H 1.08998 * 109.46856 * 299.99980 * 6 5 4 36 36 H 1.09003 * 109.47149 * 60.00008 * 6 5 4 37 37 H 0.97000 * 120.00434 * 0.02562 * 9 7 6 38 38 H 1.09007 * 109.47223 * 300.00499 * 10 9 7 39 39 H 1.09003 * 109.46890 * 59.99923 * 10 9 7 40 40 H 1.08998 * 109.46856 * 300.00032 * 11 10 9 41 41 H 1.08998 * 109.46926 * 59.99616 * 11 10 9 42 42 H 1.08999 * 109.47126 * 305.07083 * 12 11 10 43 43 H 1.09004 * 109.46939 * 65.06750 * 12 11 10 44 44 H 1.09004 * 110.72136 * 336.74854 * 15 13 12 45 45 H 1.09003 * 110.72149 * 100.02209 * 15 13 12 46 46 H 1.09001 * 110.99881 * 277.42728 * 16 15 13 47 47 H 1.09004 * 111.04174 * 153.58887 * 16 15 13 48 48 H 1.08994 * 110.36810 * 204.15213 * 17 16 15 49 49 H 1.08999 * 110.36113 * 81.83324 * 17 16 15 50 50 H 0.96999 * 119.99959 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2578 1.0966 0.0000 4 6 3.5321 0.6405 -0.0006 5 6 4.7880 1.4735 -0.0063 6 6 5.6725 1.0708 1.1753 7 6 6.9286 1.9035 1.1692 8 8 7.0994 2.7372 0.3052 9 7 7.8618 1.7222 2.1246 10 6 9.0827 2.5320 2.1190 11 6 9.9674 2.1292 3.3006 12 6 11.2426 2.9745 3.2943 13 6 12.1830 2.4871 4.3984 14 1 12.3533 1.4156 4.2937 15 6 11.5706 2.7917 5.7818 16 6 12.8048 3.2103 6.6237 17 6 13.6593 3.9600 5.5713 18 7 13.4624 3.2069 4.3194 19 6 14.3284 3.1814 3.2589 20 1 14.2178 2.4316 2.4895 21 6 15.3481 4.1192 3.1727 22 7 15.4831 5.0327 4.1107 23 14 16.5289 4.0848 1.7256 24 1 15.9939 4.9322 0.6299 25 1 17.8518 4.6061 2.1538 26 1 16.6797 2.6885 1.2429 27 7 3.4576 -0.6951 -0.0003 28 7 2.2192 -1.0430 -0.0002 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8901 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.9381 2.1282 -0.0004 33 1 5.3291 1.3087 -0.9381 34 1 4.5251 2.5279 0.0795 35 1 5.1314 1.2357 2.1070 36 1 5.9356 0.0165 1.0896 37 1 7.7252 1.0556 2.8159 38 1 9.6240 2.3669 1.1874 39 1 8.8197 3.5864 2.2044 40 1 9.4263 2.2941 4.2323 41 1 10.2302 1.0749 3.2147 42 1 11.7370 2.8791 2.3276 43 1 10.9868 4.0194 3.4701 44 1 10.8541 3.6104 5.7146 45 1 11.1020 1.9011 6.2007 46 1 13.3326 2.3359 7.0045 47 1 12.5160 3.8750 7.4379 48 1 14.7105 3.9496 5.8591 49 1 13.3067 4.9850 5.4569 50 1 16.1955 5.6882 4.0503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663127880.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:54 Heat of formation + Delta-G solvation = 65.858656 kcal Electronic energy + Delta-G solvation = -27524.389443 eV Core-core repulsion = 23588.917400 eV Total energy + Delta-G solvation = -3935.472043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.64635 -39.75336 -37.81499 -35.76868 -35.32743 -33.80136 -32.91414 -32.12253 -30.62541 -29.35366 -28.47745 -27.98980 -25.60467 -24.58971 -23.62860 -22.50540 -21.50921 -21.34568 -20.27472 -20.03747 -19.10596 -17.71432 -17.14565 -16.91451 -16.67800 -16.03804 -15.84163 -15.26276 -15.09153 -14.78445 -14.50299 -14.22020 -14.02325 -13.79641 -13.65418 -13.42764 -13.01038 -12.75417 -12.54112 -12.24614 -12.00600 -11.96100 -11.87807 -11.69642 -11.58307 -11.40337 -11.04083 -10.97622 -10.79228 -10.68127 -10.51363 -10.47290 -10.05724 -9.97099 -9.91822 -9.72709 -9.58837 -9.57386 -9.48404 -9.04678 -8.52936 -6.71887 -5.69422 -3.04193 1.16397 1.91062 2.13293 2.61161 3.16839 3.43187 3.48769 3.49853 3.85937 4.08934 4.37179 4.41300 4.53556 4.57528 4.66814 4.72067 4.89841 4.99793 5.08911 5.22715 5.26016 5.33951 5.43921 5.49325 5.64490 5.65299 5.66962 5.76064 5.77974 5.89692 5.90777 6.03049 6.09953 6.10608 6.17438 6.31832 6.39576 6.45842 6.48561 6.61400 6.74794 6.77043 7.01147 7.22227 7.46731 7.60079 7.68305 7.85565 8.11244 8.19078 8.35019 9.26058 9.87708 10.57023 11.42957 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021795 B = 0.001585 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.381460 B =17659.323398 C =18504.383278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.296 5.296 3 C -0.049 4.049 4 C -0.016 4.016 5 C -0.016 4.016 6 C -0.134 4.134 7 C 0.510 3.490 8 O -0.544 6.544 9 N -0.730 5.730 10 C 0.117 3.883 11 C -0.127 4.127 12 C -0.122 4.122 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.124 4.124 16 C -0.151 4.151 17 C 0.173 3.827 18 N -0.597 5.597 19 C -0.225 4.225 20 H 0.074 0.926 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.908 3.092 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 N -0.264 5.264 28 N -0.087 5.087 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.192 0.808 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.400 0.600 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.069 0.931 49 H 0.023 0.977 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.837 -7.906 -2.708 31.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.090 5.090 3 C -0.199 4.199 4 C -0.155 4.155 5 C -0.056 4.056 6 C -0.175 4.175 7 C 0.297 3.703 8 O -0.421 6.421 9 N -0.381 5.381 10 C -0.006 4.006 11 C -0.165 4.165 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.189 4.189 17 C 0.048 3.952 18 N -0.321 5.321 19 C -0.354 4.354 20 H 0.092 0.908 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.738 3.262 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 N -0.131 5.131 28 N -0.067 5.067 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.209 0.791 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.234 0.766 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.041 0.959 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -30.491 -8.724 -3.399 31.897 hybrid contribution 0.234 0.973 -0.450 1.098 sum -30.258 -7.751 -3.849 31.471 Atomic orbital electron populations 1.22278 0.72687 1.05989 1.05062 1.47250 1.09441 1.04985 1.47318 1.23444 0.90870 0.94788 1.10830 1.22067 0.95388 0.91482 1.06516 1.19604 0.89294 0.97436 0.99250 1.21586 0.93996 1.01427 1.00454 1.20637 0.84773 0.83696 0.81238 1.90717 1.78942 1.35469 1.36976 1.46133 1.20623 1.40993 1.30353 1.21502 0.84186 0.95113 0.99770 1.21829 0.96935 1.00939 0.96841 1.22028 0.93647 0.98848 1.01711 1.20928 0.86552 0.95130 0.91931 0.95159 1.22587 0.97450 0.99844 0.96306 1.23015 0.97365 1.00241 0.98302 1.21406 0.98284 0.92442 0.83088 1.44547 1.16843 1.55114 1.15584 1.18969 1.06493 1.10056 0.99881 0.90813 1.24886 1.00088 0.96886 0.98385 1.69942 1.34027 1.19018 1.33564 0.86180 0.80303 0.77540 0.82127 1.21551 1.21742 1.20666 1.75063 1.09376 1.12075 1.16555 1.78327 0.96481 1.12135 1.19754 0.89040 0.87991 0.88223 0.79136 0.89136 0.89256 0.89000 0.88060 0.76633 0.91418 0.91547 0.91786 0.91749 0.91612 0.92292 0.92070 0.92669 0.92520 0.92596 0.91252 0.95894 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.12 11.39 59.85 0.68 0.80 16 2 N -0.30 -1.98 3.74 -68.06 -0.25 -2.23 16 3 C -0.05 -0.31 11.54 -17.05 -0.20 -0.51 16 4 C -0.02 -0.15 6.50 -82.78 -0.54 -0.69 16 5 C -0.02 -0.14 5.08 -27.88 -0.14 -0.28 16 6 C -0.13 -1.13 5.68 -27.88 -0.16 -1.29 16 7 C 0.51 5.97 7.83 -10.99 -0.09 5.88 16 8 O -0.54 -8.54 15.98 5.56 0.09 -8.46 16 9 N -0.73 -7.81 5.56 -60.29 -0.33 -8.15 16 10 C 0.12 1.54 5.67 -4.04 -0.02 1.52 16 11 C -0.13 -1.66 5.10 -26.73 -0.14 -1.80 16 12 C -0.12 -2.18 4.72 -26.73 -0.13 -2.30 16 13 C 0.16 3.25 3.16 -66.96 -0.21 3.03 16 14 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 15 C -0.12 -2.12 5.72 -24.90 -0.14 -2.26 16 16 C -0.15 -2.85 7.09 -24.58 -0.17 -3.02 16 17 C 0.17 4.21 5.42 -2.53 -0.01 4.20 16 18 N -0.60 -15.08 3.13 -162.58 -0.51 -15.58 16 19 C -0.23 -6.25 9.71 -15.06 -0.15 -6.40 16 20 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.17 5.47 -17.43 -0.10 -0.26 16 22 N -0.92 -27.12 10.56 55.49 0.59 -26.53 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 27 N -0.26 -3.04 12.40 33.29 0.41 -2.63 16 28 N -0.09 -0.92 13.17 60.35 0.79 -0.12 16 29 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 30 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.10 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.19 0.49 8.06 -52.49 -0.42 0.06 16 33 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 34 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 3.15 8.47 -40.82 -0.35 2.80 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.75 7.65 -51.93 -0.40 0.36 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.30 7.84 -51.93 -0.41 0.90 16 43 H 0.06 1.12 8.01 -51.93 -0.42 0.70 16 44 H 0.06 1.00 7.76 -51.93 -0.40 0.60 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 49 H 0.02 0.61 8.07 -51.93 -0.42 0.19 16 50 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 408.27 15.07 6.15 6.15 Total: -1.00 -36.38 408.27 -8.22 -44.60 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.63 Total: -0.98 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.51 Total: -3.37 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.70 Total: -55.25 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.38 -8.22 -44.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663127880.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.461 kcal (2) G-P(sol) polarization free energy of solvation -36.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds