Wall clock time and date at job start Tue Mar 31 2020 18:45:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52998 * 109.47433 * 2 1
4 4 C 1.52994 * 109.47067 * 179.97438 * 3 2 1
5 5 C 1.53008 * 109.47022 * 179.97438 * 4 3 2
6 6 N 1.46505 * 109.47115 * 180.02562 * 5 4 3
7 7 C 1.34775 * 119.99729 * 179.97438 * 6 5 4
8 8 O 1.21280 * 120.00019 * 0.02562 * 7 6 5
9 9 C 1.50694 * 119.99656 * 179.97438 * 7 6 5
10 10 C 1.53126 * 109.52256 * 179.97438 * 9 7 6
11 11 C 1.53036 * 109.27947 * 177.56149 * 10 9 7
12 12 N 1.46849 * 109.52402 * 300.82251 * 11 10 9
13 13 C 1.46903 * 111.00011 * 185.83881 * 12 11 10
14 14 C 1.52994 * 109.46810 * 75.78328 * 13 12 11
15 15 H 1.08999 * 109.47328 * 304.64757 * 14 13 12
16 16 C 1.47192 * 109.47810 * 64.65304 * 14 13 12
17 17 N 9.01367 * 150.74634 * 282.02976 * 5 1 2
18 18 C 1.53003 * 109.46745 * 184.65223 * 14 13 12
19 19 C 1.50699 * 109.47104 * 174.99504 * 18 14 13
20 20 H 1.08003 * 119.99990 * 0.02562 * 19 18 14
21 21 C 1.37875 * 120.00570 * 180.02562 * 19 18 14
22 22 N 1.31509 * 120.00633 * 180.02562 * 21 19 18
23 23 Si 1.86806 * 119.99543 * 0.02562 * 21 19 18
24 24 H 1.48498 * 109.47187 * 90.00192 * 23 21 19
25 25 H 1.48498 * 109.47159 * 210.00217 * 23 21 19
26 26 H 1.48500 * 109.47226 * 330.00287 * 23 21 19
27 27 C 1.46854 * 111.19493 * 61.74149 * 12 11 10
28 28 C 1.53035 * 109.52268 * 298.25647 * 27 12 11
29 29 H 1.09001 * 109.47211 * 59.99869 * 1 2 3
30 30 H 1.08999 * 109.47274 * 180.02562 * 1 2 3
31 31 H 1.09005 * 109.47210 * 300.00456 * 1 2 3
32 32 H 1.09005 * 109.47210 * 239.99544 * 2 1 3
33 33 H 1.09001 * 109.47211 * 120.00131 * 2 1 3
34 34 H 1.09001 * 109.46813 * 59.99654 * 3 2 1
35 35 H 1.09001 * 109.47029 * 300.00243 * 3 2 1
36 36 H 1.09001 * 109.47586 * 60.00127 * 4 3 2
37 37 H 1.08997 * 109.47587 * 299.99548 * 4 3 2
38 38 H 1.08994 * 109.47018 * 60.00052 * 5 4 3
39 39 H 1.09004 * 109.46483 * 299.99497 * 5 4 3
40 40 H 0.96992 * 119.99776 * 359.97438 * 6 5 4
41 41 H 1.09000 * 109.52161 * 59.87773 * 9 7 6
42 42 H 1.09001 * 109.49597 * 57.62245 * 10 9 7
43 43 H 1.08998 * 109.53779 * 297.52597 * 10 9 7
44 44 H 1.08997 * 109.46202 * 180.80834 * 11 10 9
45 45 H 1.08999 * 109.45476 * 60.83217 * 11 10 9
46 46 H 1.08994 * 109.47131 * 315.77868 * 13 12 11
47 47 H 1.09003 * 109.46660 * 195.78031 * 13 12 11
48 48 H 1.09001 * 109.47233 * 294.99698 * 18 14 13
49 49 H 1.08998 * 109.47129 * 54.99969 * 18 14 13
50 50 H 0.97006 * 120.00432 * 180.02562 * 22 21 19
51 51 H 1.08999 * 109.45950 * 58.28024 * 27 12 11
52 52 H 1.08999 * 109.45909 * 178.24275 * 27 12 11
53 53 H 1.08997 * 109.50200 * 299.23677 * 28 27 12
54 54 H 1.08999 * 109.53169 * 179.13961 * 28 27 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4424 0.0006
5 6 4.0801 2.8849 0.0000
6 7 5.5451 2.8848 0.0000
7 6 6.2190 4.0520 -0.0010
8 8 5.6126 5.1023 -0.0015
9 6 7.7259 4.0519 -0.0005
10 6 8.2377 5.4951 -0.0025
11 6 9.7668 5.4891 0.0595
12 7 10.2058 4.7968 1.2780
13 6 11.6626 4.8919 1.4416
14 6 12.0306 6.2951 1.9279
15 1 11.6263 7.0362 1.2384
16 6 11.4657 6.5134 3.2695
17 7 11.0312 6.6755 4.3080
18 6 13.5534 6.4311 1.9874
19 6 13.9174 7.8484 2.3474
20 1 13.1404 8.5790 2.5172
21 6 15.2424 8.2126 2.4600
22 7 15.5601 9.4493 2.7746
23 14 16.5865 6.9491 2.1655
24 1 16.9647 6.9542 0.7295
25 1 17.7735 7.2875 2.9912
26 1 16.0898 5.6012 2.5418
27 6 9.7663 3.3956 1.2801
28 6 8.2372 3.3392 1.2545
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3634 0.5139 0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.6766 1.9563 0.8900
35 1 1.6767 1.9563 -0.8900
36 1 3.9337 0.9284 -0.8891
37 1 3.9330 0.9287 0.8908
38 1 3.7164 3.3992 0.8895
39 1 3.7171 3.3981 -0.8906
40 1 6.0300 2.0448 0.0008
41 1 8.0905 3.5353 -0.8884
42 1 7.8404 6.0232 0.8643
43 1 7.9125 5.9959 -0.9144
44 1 10.1338 6.5153 0.0727
45 1 10.1636 4.9726 -0.8145
46 1 12.1490 4.6995 0.4854
47 1 11.9948 4.1551 2.1730
48 1 13.9497 5.7513 2.7417
49 1 13.9786 6.1826 1.0150
50 1 16.4924 9.7056 2.8535
51 1 10.1633 2.8891 0.4004
52 1 10.1329 2.9014 2.1798
53 1 7.8399 3.8334 2.1411
54 1 7.9110 2.2993 1.2407
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000112559792.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:45:10
Heat of formation + Delta-G solvation = -71.549549 kcal
Electronic energy + Delta-G solvation = -28293.047649 eV
Core-core repulsion = 24455.157483 eV
Total energy + Delta-G solvation = -3837.890166 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.26082 -39.69591 -37.89145 -37.38490 -35.70082 -35.38559 -34.71104 -33.10950
-31.95428 -31.47862 -29.17755 -27.32550 -25.90916 -24.07971 -23.69585 -23.12387
-22.76842 -22.14027 -21.42881 -20.48598 -18.90128 -18.24853 -18.10904 -17.16172
-16.99698 -16.73484 -16.22581 -15.88694 -15.75699 -15.59128 -15.21477 -15.05053
-14.80038 -14.53700 -14.52973 -14.31542 -14.08185 -13.98420 -13.93811 -13.73881
-13.39904 -13.18731 -13.10359 -12.97776 -12.77934 -12.60665 -12.41621 -12.22638
-12.11520 -12.05010 -11.99860 -11.95853 -11.72209 -11.66363 -11.63939 -11.42922
-11.40590 -11.40182 -11.12651 -10.71039 -10.67513 -10.09914 -9.11048 -8.22471
-6.28460 1.44081 1.47731 1.58030 1.63352 2.07927 2.16002 2.21258
2.43340 2.96655 3.14240 3.37050 3.64031 3.80247 3.80836 3.88564
3.98897 4.11808 4.14073 4.29382 4.31701 4.36938 4.39139 4.43746
4.51336 4.56566 4.58929 4.68414 4.69450 4.73341 4.78378 4.84059
4.87168 4.91971 4.95669 5.00191 5.01763 5.05510 5.10150 5.18149
5.20772 5.23173 5.26632 5.29523 5.40483 5.42886 5.48905 5.49118
5.50956 5.66420 6.17758 6.30527 6.31567 6.56504 6.79500 6.94566
7.27517 7.36063 8.94783
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.031735 B = 0.001653 C = 0.001642
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 882.094635 B =16933.122843 C =17048.353110
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.122 4.122
3 C -0.119 4.119
4 C -0.119 4.119
5 C 0.117 3.883
6 N -0.717 5.717
7 C 0.514 3.486
8 O -0.590 6.590
9 C -0.098 4.098
10 C -0.094 4.094
11 C 0.056 3.944
12 N -0.567 5.567
13 C 0.072 3.928
14 C 0.025 3.975
15 H 0.107 0.893
16 C 0.265 3.735
17 N -0.522 5.522
18 C -0.002 4.002
19 C -0.532 4.532
20 H 0.024 0.976
21 C 0.001 3.999
22 N -0.957 5.957
23 Si 0.951 3.049
24 H -0.256 1.256
25 H -0.297 1.297
26 H -0.234 1.234
27 C 0.059 3.941
28 C -0.100 4.100
29 H 0.053 0.947
30 H 0.058 0.942
31 H 0.051 0.949
32 H 0.067 0.933
33 H 0.064 0.936
34 H 0.058 0.942
35 H 0.062 0.938
36 H 0.083 0.917
37 H 0.079 0.921
38 H 0.048 0.952
39 H 0.054 0.946
40 H 0.417 0.583
41 H 0.128 0.872
42 H 0.041 0.959
43 H 0.069 0.931
44 H 0.070 0.930
45 H 0.064 0.936
46 H 0.087 0.913
47 H 0.087 0.913
48 H 0.029 0.971
49 H 0.064 0.936
50 H 0.264 0.736
51 H 0.065 0.935
52 H 0.080 0.920
53 H 0.046 0.954
54 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.440 -27.562 -13.416 37.989
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.159 4.159
3 C -0.157 4.157
4 C -0.157 4.157
5 C -0.007 4.007
6 N -0.370 5.370
7 C 0.301 3.699
8 O -0.470 6.470
9 C -0.119 4.119
10 C -0.132 4.132
11 C -0.072 4.072
12 N -0.293 5.293
13 C -0.057 4.057
14 C 0.003 3.997
15 H 0.125 0.875
16 C -0.051 4.051
17 N -0.199 5.199
18 C -0.041 4.041
19 C -0.570 4.570
20 H 0.042 0.958
21 C -0.195 4.195
22 N -0.597 5.597
23 Si 0.774 3.226
24 H -0.181 1.181
25 H -0.223 1.223
26 H -0.157 1.157
27 C -0.068 4.068
28 C -0.138 4.138
29 H 0.072 0.928
30 H 0.077 0.923
31 H 0.070 0.930
32 H 0.086 0.914
33 H 0.083 0.917
34 H 0.077 0.923
35 H 0.081 0.919
36 H 0.101 0.899
37 H 0.097 0.903
38 H 0.066 0.934
39 H 0.073 0.927
40 H 0.254 0.746
41 H 0.145 0.855
42 H 0.060 0.940
43 H 0.088 0.912
44 H 0.088 0.912
45 H 0.082 0.918
46 H 0.105 0.895
47 H 0.105 0.895
48 H 0.047 0.953
49 H 0.082 0.918
50 H 0.073 0.927
51 H 0.083 0.917
52 H 0.098 0.902
53 H 0.065 0.935
54 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -23.653 -26.260 -11.426 37.143
hybrid contribution 1.189 0.215 -0.507 1.310
sum -22.465 -26.045 -11.932 36.406
Atomic orbital electron populations
1.21801 0.95965 1.01884 1.01741 1.21503 0.95854 0.96118 1.02471
1.21532 0.94322 0.97578 1.02244 1.21731 0.96222 0.93839 1.03880
1.21377 0.79603 0.98686 1.01049 1.45934 1.07426 1.08802 1.74828
1.21133 0.91005 0.83321 0.74422 1.90699 1.71519 1.33393 1.51359
1.21392 0.89562 0.98788 1.02141 1.21324 0.94858 0.95246 1.01821
1.22151 0.94459 0.99716 0.90836 1.61767 1.12622 1.15877 1.38984
1.22107 0.87448 0.93812 1.02303 1.19109 0.95969 1.00003 0.84660
0.87535 1.29533 0.90252 0.90435 0.94846 1.81046 1.13180 1.11542
1.14174 1.19583 0.90310 0.94978 0.99179 1.21424 0.92422 0.95972
1.47213 0.95767 1.26082 1.01881 0.97345 0.94185 1.70104 1.18794
1.20320 1.50504 0.85648 0.77388 0.80428 0.79143 1.18066 1.22345
1.15695 1.22119 0.94672 0.87554 1.02450 1.21560 0.95560 1.01123
0.95528 0.92805 0.92335 0.93019 0.91419 0.91689 0.92272 0.91908
0.89887 0.90284 0.93364 0.92733 0.74568 0.85468 0.93992 0.91193
0.91152 0.91832 0.89535 0.89481 0.95279 0.91758 0.92716 0.91730
0.90206 0.93495 0.87797
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.12 9.91 71.98 0.71 -0.41 16
2 C -0.12 -0.79 5.93 30.59 0.18 -0.61 16
3 C -0.12 -0.92 5.21 30.59 0.16 -0.76 16
4 C -0.12 -0.80 5.33 30.59 0.16 -0.64 16
5 C 0.12 1.54 5.67 86.38 0.49 2.03 16
6 N -0.72 -9.06 5.46 -463.05 -2.53 -11.59 16
7 C 0.51 10.38 7.15 87.66 0.63 11.01 16
8 O -0.59 -18.23 15.98 -3.03 -0.05 -18.28 16
9 C -0.10 -1.53 2.59 -11.46 -0.03 -1.56 16
10 C -0.09 -2.07 4.68 30.65 0.14 -1.93 16
11 C 0.06 1.14 5.29 86.32 0.46 1.59 16
12 N -0.57 -12.52 4.28 -896.36 -3.83 -16.35 16
13 C 0.07 1.67 4.37 86.30 0.38 2.04 16
14 C 0.02 0.84 2.27 -12.60 -0.03 0.81 16
15 H 0.11 3.60 6.71 -2.39 -0.02 3.59 16
16 C 0.27 11.18 13.66 89.42 1.22 12.41 16
17 N -0.52 -24.71 18.55 20.02 0.37 -24.33 16
18 C 0.00 -0.06 3.49 29.85 0.10 0.04 16
19 C -0.53 -29.06 9.15 25.60 0.23 -28.83 16
20 H 0.02 1.51 7.84 -2.91 -0.02 1.49 16
21 C 0.00 0.08 5.47 84.65 0.46 0.54 16
22 N -0.96 -59.82 13.96 21.45 0.30 -59.52 16
23 Si 0.95 41.21 27.47 68.60 1.88 43.10 16
24 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16
25 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16
26 H -0.23 -8.94 6.54 99.48 0.65 -8.29 16
27 C 0.06 0.89 5.43 86.32 0.47 1.36 16
28 C -0.10 -1.40 5.26 30.64 0.16 -1.24 16
29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16
30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16
31 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16
32 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16
33 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16
34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16
35 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16
36 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16
37 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16
38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16
39 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16
40 H 0.42 2.27 7.96 -92.71 -0.74 1.53 16
41 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16
42 H 0.04 1.23 8.04 -2.39 -0.02 1.21 16
43 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16
44 H 0.07 1.65 6.65 -2.39 -0.02 1.63 16
45 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
46 H 0.09 1.53 8.00 -2.39 -0.02 1.51 16
47 H 0.09 1.90 7.79 -2.39 -0.02 1.88 16
48 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16
49 H 0.06 2.23 7.57 -2.39 -0.02 2.21 16
50 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16
51 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16
52 H 0.08 1.21 7.93 -2.39 -0.02 1.19 16
53 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16
54 H 0.10 0.72 7.67 -2.39 -0.02 0.71 16
Total: -1.00 -80.35 429.25 2.11 -78.24
By element:
Atomic # 1 Polarization: 12.81 SS G_CDS: 0.06 Total: 12.88 kcal
Atomic # 6 Polarization: -10.04 SS G_CDS: 5.91 Total: -4.14 kcal
Atomic # 7 Polarization: -106.11 SS G_CDS: -5.69 Total: -111.80 kcal
Atomic # 8 Polarization: -18.23 SS G_CDS: -0.05 Total: -18.28 kcal
Atomic # 14 Polarization: 41.21 SS G_CDS: 1.88 Total: 43.10 kcal
Total: -80.35 2.11 -78.24 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000112559792.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.692 kcal
(2) G-P(sol) polarization free energy of solvation -80.354 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.662 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.241 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.550 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds