Wall clock time and date at job start Tue Mar 31 2020 19:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47091 * 2 1 4 4 C 1.53001 * 109.47091 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46936 * 180.02562 * 4 3 2 6 6 C 1.46502 * 119.99690 * 269.99710 * 5 4 3 7 7 C 1.34772 * 120.00072 * 90.00286 * 5 4 3 8 8 O 1.21284 * 120.00325 * 354.84893 * 7 5 4 9 9 C 1.50707 * 119.99991 * 174.85032 * 7 5 4 10 10 C 1.53119 * 109.52091 * 197.18452 * 9 7 5 11 11 C 1.53036 * 109.27457 * 182.37497 * 10 9 7 12 12 N 1.46847 * 109.52454 * 59.17752 * 11 10 9 13 13 C 1.46905 * 111.00081 * 174.15767 * 12 11 10 14 14 C 1.53007 * 109.47066 * 176.61629 * 13 12 11 15 15 H 1.08999 * 109.46949 * 301.59233 * 14 13 12 16 16 C 1.47199 * 109.46860 * 61.59162 * 14 13 12 17 17 N 8.81393 * 123.24111 * 207.35679 * 3 1 2 18 18 C 1.52996 * 109.46831 * 181.59272 * 14 13 12 19 19 C 1.50707 * 109.46736 * 174.99733 * 18 14 13 20 20 H 1.07997 * 119.99697 * 0.02562 * 19 18 14 21 21 C 1.37882 * 119.99642 * 180.02562 * 19 18 14 22 22 N 1.31511 * 119.99562 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 120.00076 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47250 * 90.00010 * 23 21 19 25 25 H 1.48504 * 109.47075 * 210.00117 * 23 21 19 26 26 H 1.48504 * 109.47365 * 329.99877 * 23 21 19 27 27 C 1.46846 * 111.19721 * 298.25709 * 12 11 10 28 28 C 1.53035 * 109.52386 * 61.74249 * 27 12 11 29 29 H 1.08997 * 109.46905 * 300.00140 * 1 2 3 30 30 H 1.09008 * 109.47009 * 59.99445 * 1 2 3 31 31 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47103 * 240.00508 * 2 1 3 33 33 H 1.08999 * 109.47003 * 120.00444 * 2 1 3 34 34 H 1.09004 * 109.46732 * 60.00281 * 3 2 1 35 35 H 1.08999 * 109.47560 * 300.00103 * 3 2 1 36 36 H 1.08989 * 109.47142 * 60.00058 * 4 3 2 37 37 H 1.08999 * 109.47003 * 300.00444 * 4 3 2 38 38 H 1.09002 * 109.47022 * 272.72321 * 6 5 4 39 39 H 1.08993 * 109.47128 * 32.71937 * 6 5 4 40 40 H 1.09002 * 109.46911 * 152.72081 * 6 5 4 41 41 H 1.09008 * 109.51751 * 317.30970 * 9 7 5 42 42 H 1.08996 * 109.50328 * 62.43564 * 10 9 7 43 43 H 1.08993 * 109.53473 * 302.33281 * 10 9 7 44 44 H 1.09001 * 109.46364 * 299.16076 * 11 10 9 45 45 H 1.09001 * 109.45208 * 179.18656 * 11 10 9 46 46 H 1.08999 * 109.46976 * 56.61897 * 13 12 11 47 47 H 1.08992 * 109.47187 * 296.61662 * 13 12 11 48 48 H 1.08993 * 109.47263 * 294.99913 * 18 14 13 49 49 H 1.09002 * 109.47067 * 55.00354 * 18 14 13 50 50 H 0.97004 * 120.00053 * 179.97438 * 22 21 19 51 51 H 1.09006 * 109.45806 * 181.75308 * 27 12 11 52 52 H 1.08994 * 109.46244 * 301.72003 * 27 12 11 53 53 H 1.09001 * 109.50450 * 180.87533 * 28 27 12 54 54 H 1.09004 * 109.53471 * 60.78112 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.3030 3.5147 -1.2672 7 6 4.2825 3.4587 1.1687 8 8 3.9923 2.9216 2.2167 9 6 4.8937 4.8363 1.1720 10 6 5.4325 5.1536 2.5697 11 6 5.9983 6.5755 2.5821 12 7 4.9414 7.5275 2.2175 13 6 5.4110 8.9129 2.3533 14 6 4.3139 9.8714 1.8855 15 1 4.0558 9.6505 0.8498 16 6 3.1227 9.7053 2.7342 17 7 2.2048 9.5778 3.3875 18 6 4.8173 11.3124 1.9895 19 6 3.7849 12.2478 1.4149 20 1 2.8619 11.8539 1.0159 21 6 4.0188 13.6066 1.3986 22 7 3.1176 14.4229 0.8976 23 14 5.6156 14.2877 2.0881 24 1 6.6338 14.3507 1.0090 25 1 5.3803 15.6514 2.6268 26 1 6.1022 13.4026 3.1768 27 6 4.4414 7.2718 0.8607 28 6 3.8291 5.8708 0.7968 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.9337 0.9286 -0.8890 37 1 3.9330 0.9288 0.8908 38 1 5.3175 3.3040 -1.6059 39 1 3.5907 3.1653 -2.0145 40 1 4.1831 4.5887 -1.1249 41 1 5.7093 4.8745 0.4497 42 1 6.2211 4.4459 2.8250 43 1 4.6250 5.0770 3.2976 44 1 6.8154 6.6475 1.8643 45 1 6.3697 6.8097 3.5798 46 1 6.3026 9.0557 1.7429 47 1 5.6492 9.1151 3.3974 48 1 4.9912 11.5619 3.0362 49 1 5.7488 11.4129 1.4324 50 1 3.2820 15.3789 0.8864 51 1 3.6820 8.0119 0.6080 52 1 5.2657 7.3407 0.1509 53 1 3.4721 5.6754 -0.2144 54 1 2.9955 5.8051 1.4960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112559857.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:27 Heat of formation + Delta-G solvation = -46.634849 kcal Electronic energy + Delta-G solvation = -29374.550084 eV Core-core repulsion = 25537.740300 eV Total energy + Delta-G solvation = -3836.809784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.49124 -39.87225 -37.92421 -37.25800 -35.82240 -35.42322 -34.65268 -33.07131 -31.81311 -30.41214 -29.02591 -27.60921 -26.54229 -24.64503 -24.28170 -23.35949 -22.88479 -22.08501 -21.02477 -19.96271 -18.90813 -18.21835 -18.10819 -17.41311 -16.75781 -16.44217 -16.23353 -16.08439 -15.89974 -15.55642 -15.17926 -14.89844 -14.81940 -14.63686 -14.39735 -14.21081 -14.08787 -13.90472 -13.81962 -13.68616 -13.48188 -13.37185 -13.17432 -13.09805 -12.83059 -12.77816 -12.43126 -12.32595 -12.32310 -12.17497 -12.08878 -12.01201 -11.95200 -11.72765 -11.61016 -11.50827 -11.47394 -11.40665 -11.06504 -10.71053 -10.60520 -9.64348 -9.11305 -8.22813 -6.28197 1.43658 1.47668 1.57513 1.58667 2.04584 2.07713 2.15819 2.42835 2.94500 3.13934 3.35223 3.47465 3.75975 3.81594 3.93385 3.96674 4.03383 4.15398 4.21687 4.28955 4.32736 4.34742 4.37933 4.49872 4.52824 4.59535 4.61104 4.65262 4.68495 4.72280 4.80132 4.82417 4.86050 4.88278 4.90305 4.96860 5.01856 5.03420 5.04184 5.14392 5.20522 5.25282 5.25761 5.31358 5.39217 5.41125 5.47211 5.61649 5.65861 6.16099 6.27146 6.29667 6.37471 6.79251 6.92571 7.17359 7.36152 8.94016 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.019154 B = 0.002147 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.507287 B =13038.172953 C =13526.053136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.129 4.129 4 C 0.114 3.886 5 N -0.617 5.617 6 C 0.061 3.939 7 C 0.512 3.488 8 O -0.585 6.585 9 C -0.097 4.097 10 C -0.094 4.094 11 C 0.064 3.936 12 N -0.565 5.565 13 C 0.071 3.929 14 C 0.020 3.980 15 H 0.119 0.881 16 C 0.262 3.738 17 N -0.517 5.517 18 C -0.003 4.003 19 C -0.529 4.529 20 H 0.028 0.972 21 C 0.001 3.999 22 N -0.954 5.954 23 Si 0.949 3.051 24 H -0.255 1.255 25 H -0.298 1.298 26 H -0.238 1.238 27 C 0.048 3.952 28 C -0.102 4.102 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.075 0.925 43 H 0.045 0.955 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.025 0.975 49 H 0.066 0.934 50 H 0.264 0.736 51 H 0.071 0.929 52 H 0.070 0.930 53 H 0.098 0.902 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.488 -28.348 -8.700 31.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.168 4.168 4 C -0.009 4.009 5 N -0.349 5.349 6 C -0.081 4.081 7 C 0.302 3.698 8 O -0.465 6.465 9 C -0.118 4.118 10 C -0.132 4.132 11 C -0.064 4.064 12 N -0.291 5.291 13 C -0.057 4.057 14 C -0.002 4.002 15 H 0.137 0.863 16 C -0.054 4.054 17 N -0.195 5.195 18 C -0.042 4.042 19 C -0.567 4.567 20 H 0.047 0.953 21 C -0.195 4.195 22 N -0.595 5.595 23 Si 0.772 3.228 24 H -0.179 1.179 25 H -0.225 1.225 26 H -0.161 1.161 27 C -0.079 4.079 28 C -0.140 4.140 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.141 0.859 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.104 0.896 47 H 0.100 0.900 48 H 0.044 0.956 49 H 0.084 0.916 50 H 0.073 0.927 51 H 0.089 0.911 52 H 0.088 0.912 53 H 0.116 0.884 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.538 -28.746 -6.904 30.771 hybrid contribution 0.445 1.049 -0.208 1.158 sum 8.983 -27.697 -7.111 29.973 Atomic orbital electron populations 1.21774 0.95731 1.02093 1.01504 1.21434 0.96076 0.95466 1.02627 1.21903 0.95635 0.97907 1.01359 1.21563 0.93877 0.82079 1.03342 1.48038 1.65369 1.14575 1.06898 1.22286 1.03102 0.98684 0.84004 1.21151 0.77446 0.88163 0.83069 1.90671 1.53584 1.68984 1.33260 1.21384 0.99643 0.90305 1.00484 1.21347 1.00432 0.96234 0.95177 1.22057 0.91999 0.90399 1.01896 1.61873 1.37300 1.03048 1.26862 1.22140 0.95081 0.85600 1.02889 1.19243 0.86516 0.97493 0.96955 0.86300 1.29364 0.93920 0.89516 0.92615 1.80910 1.13393 1.12553 1.12622 1.19592 0.97086 0.89646 0.97874 1.21387 1.03655 0.92050 1.39591 0.95336 1.26051 1.00779 0.97540 0.95145 1.70092 1.37534 1.03913 1.47947 0.85685 0.79391 0.77459 0.80313 1.17909 1.22452 1.16100 1.22225 1.00188 0.96259 0.89243 1.21618 0.96852 0.93343 1.02194 0.94098 0.92290 0.91735 0.89988 0.92533 0.94878 0.90998 0.87588 0.92156 0.90438 0.89449 0.89499 0.85918 0.90654 0.93639 0.91965 0.90212 0.89594 0.89971 0.95646 0.91631 0.92723 0.91062 0.91171 0.88438 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.44 5.93 30.60 0.18 -1.26 16 3 C -0.13 -1.97 5.54 30.60 0.17 -1.80 16 4 C 0.11 1.62 5.38 86.38 0.46 2.09 16 5 N -0.62 -9.44 2.87 -846.76 -2.43 -11.87 16 6 C 0.06 0.44 9.94 127.77 1.27 1.71 16 7 C 0.51 11.24 6.87 87.66 0.60 11.84 16 8 O -0.59 -18.40 15.60 -3.04 -0.05 -18.44 16 9 C -0.10 -1.68 1.75 -11.46 -0.02 -1.70 16 10 C -0.09 -1.92 4.86 30.65 0.15 -1.77 16 11 C 0.06 1.15 5.46 86.33 0.47 1.62 16 12 N -0.57 -12.95 4.37 -896.35 -3.92 -16.86 16 13 C 0.07 1.68 4.51 86.30 0.39 2.07 16 14 C 0.02 0.64 1.76 -12.60 -0.02 0.62 16 15 H 0.12 3.62 6.09 -2.39 -0.01 3.61 16 16 C 0.26 10.84 13.44 89.47 1.20 12.04 16 17 N -0.52 -24.30 18.52 19.98 0.37 -23.93 16 18 C 0.00 -0.12 3.49 29.85 0.10 -0.01 16 19 C -0.53 -28.15 9.15 25.60 0.23 -27.92 16 20 H 0.03 1.72 7.84 -2.91 -0.02 1.70 16 21 C 0.00 0.08 5.47 84.66 0.46 0.54 16 22 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 23 Si 0.95 40.96 27.47 68.60 1.88 42.84 16 24 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 26 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 27 C 0.05 0.95 5.04 86.33 0.44 1.38 16 28 C -0.10 -1.93 5.10 30.64 0.16 -1.78 16 29 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.11 0.85 8.07 -2.39 -0.02 0.83 16 37 H 0.06 1.13 7.50 -2.39 -0.02 1.11 16 38 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.09 0.40 8.09 -2.39 -0.02 0.38 16 40 H 0.09 0.59 4.29 -2.39 -0.01 0.58 16 41 H 0.12 1.35 7.55 -2.38 -0.02 1.33 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.04 1.27 7.84 -2.39 -0.02 1.25 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 1.43 8.12 -2.39 -0.02 1.41 16 46 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.03 1.02 7.20 -2.39 -0.02 1.00 16 49 H 0.07 2.22 7.57 -2.39 -0.02 2.20 16 50 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 51 H 0.07 1.66 5.72 -2.38 -0.01 1.65 16 52 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.10 1.35 5.71 -2.39 -0.01 1.34 16 54 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -78.90 421.05 3.92 -74.97 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.80 Total: 15.21 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 6.97 Total: -3.55 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -5.68 Total: -111.03 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.05 Total: -18.44 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.88 Total: 42.84 kcal Total: -78.90 3.92 -74.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112559857.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.340 kcal (2) G-P(sol) polarization free energy of solvation -78.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds