Wall clock time and date at job start Tue Mar 31 2020 18:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47133 * 2 1 4 4 C 1.53000 * 109.46882 * 239.99582 * 2 1 3 5 5 C 1.50703 * 109.46565 * 119.99999 * 2 1 3 6 6 O 1.21280 * 120.00525 * 359.97438 * 5 2 1 7 7 N 1.34781 * 119.99606 * 179.97438 * 5 2 1 8 8 C 1.46500 * 120.00202 * 180.02562 * 7 5 2 9 9 C 1.52995 * 109.47275 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.50059 * 305.07345 * 9 8 7 11 11 C 1.53114 * 109.53668 * 65.17297 * 9 8 7 12 12 C 1.53123 * 109.16198 * 177.61433 * 11 9 8 13 13 C 1.53035 * 109.27774 * 302.35270 * 12 11 9 14 14 N 1.46846 * 109.52744 * 59.17321 * 13 12 11 15 15 C 1.46904 * 110.99942 * 174.16069 * 14 13 12 16 16 C 1.52998 * 109.47283 * 293.95697 * 15 14 13 17 17 H 1.09001 * 109.47228 * 54.99720 * 16 15 14 18 18 C 1.47203 * 109.47089 * 294.99785 * 16 15 14 19 19 N 9.83223 * 148.12505 * 152.12161 * 2 1 3 20 20 C 1.53000 * 109.47189 * 175.00113 * 16 15 14 21 21 C 1.50692 * 109.47313 * 184.99898 * 20 16 15 22 22 H 1.08007 * 120.00256 * 359.97438 * 21 20 16 23 23 C 1.37872 * 120.00343 * 180.02562 * 21 20 16 24 24 N 1.31518 * 120.00159 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00337 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47017 * 89.99734 * 25 23 21 27 27 H 1.48503 * 109.47332 * 209.99811 * 25 23 21 28 28 H 1.48499 * 109.46939 * 329.99695 * 25 23 21 29 29 C 1.46844 * 111.19783 * 298.26158 * 14 13 12 30 30 H 1.09002 * 109.47421 * 300.00226 * 1 2 3 31 31 H 1.09003 * 109.46910 * 60.00003 * 1 2 3 32 32 H 1.09002 * 109.47406 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46976 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46710 * 299.99781 * 3 2 1 35 35 H 1.08994 * 109.47326 * 59.99891 * 3 2 1 36 36 H 1.08992 * 109.47144 * 300.00209 * 4 2 1 37 37 H 1.09003 * 109.47009 * 60.00475 * 4 2 1 38 38 H 1.09000 * 109.46746 * 180.02562 * 4 2 1 39 39 H 0.97006 * 119.99719 * 0.02562 * 7 5 2 40 40 H 1.09001 * 109.46744 * 59.99544 * 8 7 5 41 41 H 1.09002 * 109.46713 * 300.00143 * 8 7 5 42 42 H 1.09000 * 109.52528 * 297.52073 * 11 9 8 43 43 H 1.09001 * 109.52673 * 57.64776 * 11 9 8 44 44 H 1.08995 * 109.51026 * 182.40543 * 12 11 9 45 45 H 1.09011 * 109.49940 * 62.28508 * 12 11 9 46 46 H 1.09008 * 109.45841 * 299.15478 * 13 12 11 47 47 H 1.09003 * 109.46290 * 179.19461 * 13 12 11 48 48 H 1.09003 * 109.46771 * 53.95568 * 15 14 13 49 49 H 1.08996 * 109.47080 * 173.95113 * 15 14 13 50 50 H 1.09003 * 109.46960 * 304.99868 * 20 16 15 51 51 H 1.09002 * 109.47086 * 64.99351 * 20 16 15 52 52 H 0.96992 * 120.00326 * 180.02562 * 24 23 21 53 53 H 1.09000 * 109.46271 * 181.75698 * 29 14 13 54 54 H 1.08998 * 109.46026 * 301.72258 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0322 -0.7104 1.2305 6 8 1.2441 -1.1710 2.0291 7 7 3.3573 -0.8341 1.4436 8 6 3.8457 -1.5252 2.6395 9 6 5.3756 -1.5251 2.6396 10 1 5.7396 -1.9577 1.7076 11 6 5.8876 -0.0880 2.7703 12 6 7.4176 -0.1029 2.8295 13 6 7.8693 -0.9721 4.0053 14 7 7.3548 -2.3366 3.8331 15 6 7.8828 -3.2331 4.8702 16 6 9.3940 -3.3883 4.6893 17 1 9.8625 -2.4041 4.6859 18 6 9.6682 -4.0666 3.4119 19 7 9.8796 -4.5895 2.4278 20 6 9.9628 -4.2200 5.8406 21 6 11.4649 -4.2699 5.7301 22 1 11.9640 -3.7598 4.9194 23 6 12.2020 -4.9676 6.6632 24 7 11.5944 -5.5892 7.6502 25 14 14.0641 -5.0289 6.5266 26 1 14.6532 -3.8912 7.2775 27 1 14.5604 -6.3076 7.0957 28 1 14.4588 -4.9366 5.0980 29 6 5.8865 -2.3529 3.8209 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6766 -1.7489 -1.2491 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 3.9877 -0.4654 0.8050 40 1 3.4820 -2.5527 2.6392 41 1 3.4826 -1.0114 3.5296 42 1 5.5620 0.4945 1.9085 43 1 5.4912 0.3584 3.6824 44 1 7.7865 0.9136 2.9656 45 1 7.8137 -0.5132 1.9005 46 1 7.4843 -0.5534 4.9353 47 1 8.9584 -0.9964 4.0416 48 1 7.6760 -2.8119 5.8541 49 1 7.4045 -4.2088 4.7849 50 1 9.6834 -3.7643 6.7906 51 1 9.5610 -5.2320 5.7910 52 1 12.1130 -6.0797 8.3068 53 1 5.5355 -3.3803 3.7232 54 1 5.5109 -1.9280 4.7516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112731595.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:44 Heat of formation + Delta-G solvation = -65.062253 kcal Electronic energy + Delta-G solvation = -29106.005611 eV Core-core repulsion = 25268.396755 eV Total energy + Delta-G solvation = -3837.608856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.28954 -40.27957 -38.19475 -36.67007 -36.40974 -35.53266 -34.40854 -32.66686 -32.21812 -28.69361 -28.20991 -28.14203 -27.06737 -25.83226 -23.91519 -23.64954 -23.39044 -22.16878 -20.84801 -20.12187 -18.53327 -18.13754 -17.74224 -17.23041 -16.86678 -16.52263 -16.34130 -15.76853 -15.68353 -15.30517 -15.21135 -14.98176 -14.72294 -14.61189 -14.46005 -14.28828 -14.09403 -13.83647 -13.58868 -13.43029 -13.29287 -13.15251 -13.06287 -13.02140 -12.95782 -12.83085 -12.68087 -12.62084 -12.47471 -12.37516 -12.02068 -11.94968 -11.89784 -11.84115 -11.58066 -11.44070 -11.41128 -11.15741 -11.01426 -10.67361 -10.54773 -10.08790 -9.19909 -8.19422 -6.27739 1.40023 1.42217 1.51317 1.64261 2.07964 2.16009 2.17596 2.41430 2.94015 3.15991 3.35888 3.62121 3.75337 3.80280 3.86524 3.92884 3.94966 4.12067 4.23329 4.29603 4.38034 4.42455 4.51574 4.54715 4.65051 4.68401 4.71706 4.73103 4.73524 4.82730 4.83179 4.89363 4.92653 4.95587 4.95888 5.01920 5.03743 5.07043 5.14328 5.20880 5.24023 5.32085 5.33941 5.35124 5.43524 5.46461 5.54941 5.61465 5.79093 6.09119 6.22656 6.24348 6.54621 6.83413 6.94286 7.25049 7.40870 8.91405 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.028296 B = 0.001872 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.295543 B =14956.372367 C =15062.336952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 C -0.138 4.138 4 C -0.139 4.139 5 C 0.515 3.485 6 O -0.589 6.589 7 N -0.713 5.713 8 C 0.131 3.869 9 C -0.083 4.083 10 H 0.081 0.919 11 C -0.108 4.108 12 C -0.111 4.111 13 C 0.043 3.957 14 N -0.550 5.550 15 C 0.073 3.927 16 C 0.022 3.978 17 H 0.117 0.883 18 C 0.267 3.733 19 N -0.513 5.513 20 C 0.037 3.963 21 C -0.537 4.537 22 H 0.054 0.946 23 C 0.010 3.990 24 N -0.923 5.923 25 Si 0.949 3.051 26 H -0.266 1.266 27 H -0.285 1.285 28 H -0.276 1.276 29 C 0.064 3.936 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.413 0.587 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.044 0.956 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.034 0.966 51 H 0.000 1.000 52 H 0.264 0.736 53 H 0.071 0.929 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.629 18.539 -14.430 30.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.197 4.197 5 C 0.303 3.697 6 O -0.469 6.469 7 N -0.366 5.366 8 C 0.006 3.994 9 C -0.102 4.102 10 H 0.099 0.901 11 C -0.146 4.146 12 C -0.149 4.149 13 C -0.084 4.084 14 N -0.274 5.274 15 C -0.056 4.056 16 C 0.000 4.000 17 H 0.134 0.866 18 C -0.049 4.049 19 N -0.190 5.190 20 C -0.001 4.001 21 C -0.576 4.576 22 H 0.072 0.928 23 C -0.189 4.189 24 N -0.563 5.563 25 Si 0.775 3.225 26 H -0.191 1.191 27 H -0.211 1.211 28 H -0.201 1.201 29 C -0.065 4.065 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.250 0.750 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.052 0.948 51 H 0.019 0.981 52 H 0.073 0.927 53 H 0.089 0.911 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.654 17.148 -15.642 30.414 hybrid contribution 1.043 -0.215 1.361 1.728 sum -18.612 16.933 -14.281 28.932 Atomic orbital electron populations 1.21672 0.92490 1.01909 1.02463 1.20872 0.97723 0.97481 0.92682 1.21880 1.02037 0.92149 1.03437 1.21890 1.01952 0.99968 0.95860 1.21220 0.82112 0.78765 0.87622 1.90681 1.56606 1.50687 1.48931 1.45926 1.06956 1.58192 1.25478 1.21214 0.93477 0.96822 0.87857 1.21268 0.92328 0.97082 0.99568 0.90076 1.21615 0.95294 0.94882 1.02791 1.21545 0.95776 0.99547 0.98024 1.22286 1.00394 0.87523 0.98191 1.61856 1.08224 1.09401 1.47959 1.22026 0.91797 0.97677 0.94123 1.19187 0.96788 0.99097 0.84916 0.86557 1.29229 0.90287 0.91777 0.93608 1.80900 1.11687 1.11779 1.14680 1.18992 0.94380 0.94270 0.92488 1.21533 0.93243 1.32147 1.10638 0.92773 1.25725 1.02825 0.95126 0.95176 1.70033 1.37139 1.34260 1.14887 0.85681 0.80848 0.77793 0.78172 1.19118 1.21100 1.20062 1.21982 0.86720 1.00349 0.97409 0.93385 0.89646 0.93651 0.90780 0.89474 0.92920 0.93289 0.89375 0.90963 0.74979 0.92710 0.92016 0.90174 0.91695 0.89831 0.92056 0.93823 0.90910 0.91480 0.90713 0.94773 0.98145 0.92743 0.91079 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 7.76 71.98 0.56 -1.17 16 2 C -0.08 -1.00 0.87 -52.93 -0.05 -1.05 16 3 C -0.14 -1.00 8.37 71.98 0.60 -0.40 16 4 C -0.14 -1.17 8.37 71.98 0.60 -0.57 16 5 C 0.52 9.66 6.48 87.66 0.57 10.23 16 6 O -0.59 -16.71 15.98 -3.03 -0.05 -16.76 16 7 N -0.71 -10.16 5.09 -463.06 -2.36 -12.52 16 8 C 0.13 2.19 5.07 86.38 0.44 2.63 16 9 C -0.08 -1.30 2.38 -10.75 -0.03 -1.32 16 10 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 11 C -0.11 -1.39 5.13 30.67 0.16 -1.23 16 12 C -0.11 -1.73 6.09 30.65 0.19 -1.54 16 13 C 0.04 0.88 5.30 86.33 0.46 1.34 16 14 N -0.55 -13.07 4.36 -896.37 -3.90 -16.97 16 15 C 0.07 2.03 4.32 86.30 0.37 2.41 16 16 C 0.02 0.78 2.14 -12.60 -0.03 0.75 16 17 H 0.12 3.78 6.23 -2.39 -0.01 3.77 16 18 C 0.27 10.93 13.66 89.46 1.22 12.16 16 19 N -0.51 -22.96 18.53 19.99 0.37 -22.59 16 20 C 0.04 1.72 4.42 29.85 0.13 1.85 16 21 C -0.54 -28.33 8.60 25.60 0.22 -28.11 16 22 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 23 C 0.01 0.57 5.46 84.65 0.46 1.03 16 24 N -0.92 -52.95 13.29 21.45 0.28 -52.66 16 25 Si 0.95 43.29 29.54 68.60 2.03 45.31 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 28 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 29 C 0.06 1.25 4.74 86.32 0.41 1.66 16 30 H 0.05 0.77 8.10 -2.39 -0.02 0.76 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.07 0.34 7.56 -2.39 -0.02 0.32 16 34 H 0.09 0.35 8.14 -2.39 -0.02 0.34 16 35 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.07 0.45 7.56 -2.39 -0.02 0.43 16 39 H 0.41 3.67 6.52 -92.70 -0.60 3.06 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 0.73 7.27 -2.39 -0.02 0.71 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 45 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.04 0.82 8.14 -2.38 -0.02 0.81 16 47 H 0.07 1.62 6.13 -2.39 -0.01 1.61 16 48 H 0.07 1.71 8.12 -2.39 -0.02 1.70 16 49 H 0.07 2.17 7.98 -2.39 -0.02 2.15 16 50 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 52 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 53 H 0.07 1.48 8.01 -2.39 -0.02 1.46 16 54 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -70.04 426.90 2.91 -67.13 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.25 Total: 10.39 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 6.29 Total: -1.34 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -5.61 Total: -104.74 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.05 Total: -16.76 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -70.04 2.91 -67.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112731595.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.067 kcal (2) G-P(sol) polarization free energy of solvation -70.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds