Wall clock time and date at job start Tue Mar 31 2020 18:53:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.53001 * 109.46849 * 2 1
4 4 C 1.52992 * 109.47239 * 120.00361 * 2 1 3
5 5 H 1.08994 * 108.74296 * 305.19137 * 4 2 1
6 6 C 1.50460 * 108.77102 * 63.50029 * 4 2 1
7 7 C 1.54513 * 108.85302 * 212.95346 * 6 4 2
8 8 C 1.45858 * 111.59004 * 282.80534 * 7 6 4
9 9 N 1.47805 * 112.92128 * 61.32468 * 8 7 6
10 10 C 1.46898 * 111.00172 * 153.87216 * 9 8 7
11 11 C 1.50691 * 109.47449 * 66.04288 * 10 9 8
12 12 O 1.21283 * 120.00113 * 0.02562 * 11 10 9
13 13 N 1.34780 * 120.00104 * 180.02562 * 11 10 9
14 14 C 1.46498 * 120.00152 * 180.02562 * 13 11 10
15 15 C 1.50706 * 109.46837 * 269.99898 * 14 13 11
16 16 H 1.08001 * 119.99561 * 359.97438 * 15 14 13
17 17 C 1.37874 * 119.99867 * 180.02562 * 15 14 13
18 18 N 1.31510 * 120.00115 * 359.97438 * 17 15 14
19 19 Si 1.86803 * 119.99787 * 179.97438 * 17 15 14
20 20 H 1.48497 * 109.47009 * 59.99441 * 19 17 15
21 21 H 1.48497 * 109.47111 * 179.97438 * 19 17 15
22 22 H 1.48500 * 109.47177 * 299.99387 * 19 17 15
23 23 C 1.46500 * 119.99871 * 359.97438 * 13 11 10
24 24 C 1.52997 * 109.47368 * 270.00472 * 23 13 11
25 25 C 1.47196 * 109.47449 * 180.02562 * 24 23 13
26 26 N 9.11970 * 148.67352 * 114.24038 * 4 1 2
27 27 C 1.44275 * 109.46148 * 276.74527 * 9 8 7
28 28 C 1.54066 * 111.98307 * 96.43427 * 27 9 8
29 29 H 1.09002 * 109.46819 * 294.07632 * 1 2 3
30 30 H 1.08994 * 109.47260 * 54.07498 * 1 2 3
31 31 H 1.09000 * 109.47079 * 174.07709 * 1 2 3
32 32 H 1.09003 * 109.46980 * 240.00811 * 2 1 3
33 33 H 1.09000 * 109.46893 * 179.97438 * 3 2 1
34 34 H 1.08994 * 109.47605 * 300.00299 * 3 2 1
35 35 H 1.09003 * 109.46667 * 60.00619 * 3 2 1
36 36 H 1.09001 * 109.57832 * 93.13903 * 6 4 2
37 37 H 1.09005 * 109.67704 * 332.81969 * 6 4 2
38 38 H 1.08994 * 109.05486 * 162.26227 * 7 6 4
39 39 H 1.08997 * 109.05340 * 43.34839 * 7 6 4
40 40 H 1.09008 * 108.79163 * 300.43833 * 8 7 6
41 41 H 1.08994 * 108.70566 * 182.15342 * 8 7 6
42 42 H 1.09005 * 109.46535 * 306.04291 * 10 9 8
43 43 H 1.09000 * 109.47107 * 186.05315 * 10 9 8
44 44 H 1.09002 * 109.47608 * 149.99702 * 14 13 11
45 45 H 1.08998 * 109.47713 * 29.99344 * 14 13 11
46 46 H 0.97007 * 119.99949 * 180.02562 * 18 17 15
47 47 H 1.09000 * 109.46979 * 29.99986 * 23 13 11
48 48 H 1.08996 * 109.47205 * 150.00124 * 23 13 11
49 49 H 1.09001 * 109.47281 * 300.00145 * 24 23 13
50 50 H 1.08996 * 109.47242 * 59.99675 * 24 23 13
51 51 H 1.09003 * 108.97347 * 217.07790 * 27 9 8
52 52 H 1.08997 * 108.97847 * 335.78476 * 27 9 8
53 53 H 1.09004 * 108.91322 * 198.18866 * 28 27 9
54 54 H 1.08999 * 108.84329 * 79.59236 * 28 27 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7213 1.2491
5 1 1.5960 -0.2551 2.1286
6 6 1.6022 -2.1596 1.1904
7 6 1.3391 -2.6605 2.6282
8 6 2.5835 -2.9519 3.3311
9 7 3.4528 -1.7656 3.4784
10 6 4.3301 -1.8979 4.6492
11 6 5.3010 -3.0282 4.4244
12 8 5.2660 -3.6611 3.3904
13 7 6.2082 -3.3359 5.3724
14 6 7.1525 -4.4344 5.1536
15 6 6.5549 -5.7198 5.6654
16 1 5.5705 -5.7184 6.1095
17 6 7.2655 -6.8973 5.5675
18 7 8.4644 -6.8988 5.0271
19 14 6.5251 -8.4904 6.2025
20 1 5.2609 -8.7727 5.4764
21 1 7.4821 -9.6040 5.9807
22 1 6.2435 -8.3611 7.6548
23 6 6.2509 -2.5711 6.6212
24 6 7.2014 -1.3831 6.4595
25 6 7.2447 -0.6150 7.7144
26 7 7.2771 -0.0210 8.6823
27 6 4.2238 -1.5821 2.2728
28 6 3.5727 -0.5594 1.3220
29 1 -0.3633 0.4193 0.9383
30 1 -0.3633 0.6029 -0.8321
31 1 -0.3633 -1.0222 -0.1060
32 1 1.8934 -0.5137 -0.8901
33 1 3.1300 1.4425 0.0005
34 1 1.6767 1.9564 -0.8899
35 1 1.6767 1.9563 0.8901
36 1 2.3865 -2.7617 0.7317
37 1 0.6880 -2.2412 0.6023
38 1 0.7346 -3.5664 2.5844
39 1 0.7912 -1.8947 3.1771
40 1 3.1269 -3.7192 2.7796
41 1 2.3433 -3.3364 4.3223
42 1 3.7273 -2.1070 5.5330
43 1 4.8813 -0.9692 4.7969
44 1 8.0805 -4.2275 5.6867
45 1 7.3592 -4.5290 4.0876
46 1 8.9642 -7.7274 4.9579
47 1 5.2513 -2.2069 6.8585
48 1 6.6049 -3.2125 7.4282
49 1 8.2010 -1.7472 6.2222
50 1 6.8473 -0.7417 5.6525
51 1 5.2213 -1.2330 2.5397
52 1 4.3107 -2.5391 1.7584
53 1 3.9898 -0.6900 0.3234
54 1 3.8057 0.4458 1.6731
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000114730075.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:53:04
Heat of formation + Delta-G solvation = -37.451501 kcal
Electronic energy + Delta-G solvation = -30494.420613 eV
Core-core repulsion = 26658.009049 eV
Total energy + Delta-G solvation = -3836.411564 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.46693 -39.85505 -38.06297 -37.29536 -36.44489 -34.89705 -34.00624 -32.42516
-32.13267 -30.07487 -28.66908 -27.91586 -25.91450 -25.47883 -25.29152 -24.11456
-21.76467 -21.53614 -20.27770 -19.65309 -18.78505 -18.32240 -17.92661 -17.25594
-16.71650 -16.66177 -16.12871 -15.91475 -15.66808 -15.53215 -15.43909 -14.93548
-14.82438 -14.45559 -14.39352 -14.09408 -13.93964 -13.80578 -13.60577 -13.51992
-13.31973 -13.18145 -12.95865 -12.92402 -12.73299 -12.56435 -12.52328 -12.48770
-12.27103 -12.16159 -12.11282 -12.00942 -11.79578 -11.69860 -11.56584 -11.36904
-11.12968 -10.95775 -10.92413 -10.75721 -10.60346 -9.44820 -9.11234 -8.19590
-6.32005 1.37758 1.40283 1.47044 1.69893 1.85940 1.91370 2.31270
2.44900 2.98970 3.10739 3.17089 3.78939 3.82799 3.94885 4.06553
4.10935 4.13702 4.14260 4.23230 4.35882 4.42400 4.52215 4.57498
4.60412 4.64519 4.68303 4.77968 4.84409 4.88199 4.94467 4.96331
5.02492 5.06855 5.09382 5.11053 5.12933 5.14312 5.20594 5.29897
5.32859 5.37184 5.44265 5.45929 5.51379 5.56083 5.60643 5.67790
5.78918 5.87576 6.06522 6.12359 6.19556 6.62346 6.75001 6.83009
7.33560 7.53885 8.86680
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.010255 B = 0.003280 C = 0.002687
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2729.657325 B = 8533.570981 C =10418.561830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.095 4.095
3 C -0.146 4.146
4 C -0.063 4.063
5 H 0.073 0.927
6 C -0.113 4.113
7 C -0.107 4.107
8 C 0.052 3.948
9 N -0.491 5.491
10 C 0.037 3.963
11 C 0.469 3.531
12 O -0.580 6.580
13 N -0.598 5.598
14 C 0.262 3.738
15 C -0.538 4.538
16 H 0.052 0.948
17 C 0.011 3.989
18 N -0.926 5.926
19 Si 0.956 3.044
20 H -0.280 1.280
21 H -0.283 1.283
22 H -0.263 1.263
23 C 0.114 3.886
24 C -0.037 4.037
25 C 0.246 3.754
26 N -0.489 5.489
27 C 0.061 3.939
28 C -0.097 4.097
29 H 0.056 0.944
30 H 0.056 0.944
31 H 0.055 0.945
32 H 0.059 0.941
33 H 0.055 0.945
34 H 0.054 0.946
35 H 0.055 0.945
36 H 0.037 0.963
37 H 0.077 0.923
38 H 0.064 0.936
39 H 0.077 0.923
40 H 0.021 0.979
41 H 0.057 0.943
42 H 0.121 0.879
43 H 0.134 0.866
44 H 0.030 0.970
45 H 0.000 1.000
46 H 0.265 0.735
47 H 0.108 0.892
48 H 0.080 0.920
49 H 0.117 0.883
50 H 0.137 0.863
51 H 0.051 0.949
52 H 0.026 0.974
53 H 0.054 0.946
54 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.553 16.334 -5.870 22.021
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.113 4.113
3 C -0.203 4.203
4 C -0.081 4.081
5 H 0.091 0.909
6 C -0.151 4.151
7 C -0.145 4.145
8 C -0.075 4.075
9 N -0.213 5.213
10 C -0.095 4.095
11 C 0.257 3.743
12 O -0.460 6.460
13 N -0.329 5.329
14 C 0.140 3.860
15 C -0.577 4.577
16 H 0.070 0.930
17 C -0.188 4.188
18 N -0.566 5.566
19 Si 0.781 3.219
20 H -0.205 1.205
21 H -0.208 1.208
22 H -0.187 1.187
23 C -0.011 4.011
24 C -0.078 4.078
25 C -0.071 4.071
26 N -0.167 5.167
27 C -0.068 4.068
28 C -0.135 4.135
29 H 0.075 0.925
30 H 0.075 0.925
31 H 0.074 0.926
32 H 0.077 0.923
33 H 0.074 0.926
34 H 0.073 0.927
35 H 0.074 0.926
36 H 0.056 0.944
37 H 0.095 0.905
38 H 0.083 0.917
39 H 0.096 0.904
40 H 0.040 0.960
41 H 0.075 0.925
42 H 0.138 0.862
43 H 0.152 0.848
44 H 0.048 0.952
45 H 0.018 0.982
46 H 0.074 0.926
47 H 0.127 0.873
48 H 0.099 0.901
49 H 0.135 0.865
50 H 0.155 0.845
51 H 0.069 0.931
52 H 0.044 0.956
53 H 0.073 0.927
54 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -13.674 17.206 -4.933 22.525
hybrid contribution 0.936 -2.549 -0.249 2.726
sum -12.739 14.658 -5.182 20.099
Atomic orbital electron populations
1.21885 0.94836 1.01689 1.01860 1.21254 0.96060 0.96380 0.97646
1.21865 1.01140 0.95592 1.01686 1.20806 0.94555 0.94837 0.97945
0.90868 1.21485 1.00880 0.96398 0.96292 1.20530 0.96153 1.01675
0.96103 1.21034 0.95076 0.91239 1.00200 1.62195 1.19197 1.37134
1.02756 1.22782 0.93771 0.96737 0.96192 1.22634 0.82238 0.86341
0.83076 1.90674 1.71825 1.54789 1.28752 1.48238 1.34330 1.32868
1.17460 1.18724 0.87961 0.83857 0.95421 1.21709 1.02449 0.94026
1.39498 0.92982 1.25717 0.95268 1.02296 0.95524 1.70017 1.12611
1.28587 1.45430 0.85646 0.77969 0.79025 0.79255 1.20545 1.20789
1.18742 1.21511 1.01141 0.91886 0.86578 1.19814 1.04456 0.95159
0.88354 1.29126 0.91553 0.92361 0.94069 1.81256 1.10552 1.11964
1.12918 1.21854 0.95309 0.98400 0.91189 1.22029 0.95421 0.98597
0.97493 0.92530 0.92481 0.92558 0.92256 0.92605 0.92674 0.92556
0.94388 0.90492 0.91712 0.90443 0.96024 0.92453 0.86161 0.84826
0.95224 0.98167 0.92616 0.87346 0.90113 0.86488 0.84515 0.93079
0.95566 0.92681 0.91048
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.98 8.85 71.98 0.64 -1.34 16
2 C -0.09 -1.48 2.36 -10.79 -0.03 -1.50 16
3 C -0.15 -2.03 8.69 71.98 0.63 -1.40 16
4 C -0.06 -1.16 1.44 -11.18 -0.02 -1.18 16
5 H 0.07 1.39 7.37 -2.39 -0.02 1.37 16
6 C -0.11 -2.34 4.96 30.29 0.15 -2.19 16
7 C -0.11 -2.31 5.53 28.92 0.16 -2.15 16
8 C 0.05 1.42 4.23 83.94 0.36 1.78 16
9 N -0.49 -12.06 4.45 -916.41 -4.08 -16.14 16
10 C 0.04 0.83 4.12 85.55 0.35 1.19 16
11 C 0.47 16.11 6.88 87.65 0.60 16.71 16
12 O -0.58 -25.97 11.96 -3.04 -0.04 -26.01 16
13 N -0.60 -20.76 2.46 -826.17 -2.03 -22.79 16
14 C 0.26 12.54 5.16 85.64 0.44 12.98 16
15 C -0.54 -28.92 9.39 25.60 0.24 -28.68 16
16 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16
17 C 0.01 0.61 5.46 84.65 0.46 1.07 16
18 N -0.93 -53.93 13.29 21.45 0.28 -53.64 16
19 Si 0.96 43.66 29.54 68.60 2.03 45.69 16
20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16
21 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16
22 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16
23 C 0.11 2.67 5.17 86.38 0.45 3.11 16
24 C -0.04 -0.64 6.03 28.79 0.17 -0.47 16
25 C 0.25 5.21 15.43 89.44 1.38 6.59 16
26 N -0.49 -13.33 18.54 20.01 0.37 -12.96 16
27 C 0.06 1.64 3.75 87.15 0.33 1.96 16
28 C -0.10 -2.00 4.33 31.39 0.14 -1.87 16
29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16
31 H 0.06 0.77 6.33 -2.39 -0.02 0.75 16
32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
33 H 0.05 0.80 6.63 -2.39 -0.02 0.78 16
34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
36 H 0.04 0.96 7.15 -2.39 -0.02 0.94 16
37 H 0.08 1.37 5.71 -2.38 -0.01 1.36 16
38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16
39 H 0.08 1.49 7.59 -2.39 -0.02 1.47 16
40 H 0.02 0.77 5.91 -2.38 -0.01 0.76 16
41 H 0.06 1.55 7.64 -2.39 -0.02 1.54 16
42 H 0.12 2.29 7.15 -2.38 -0.02 2.28 16
43 H 0.13 2.13 7.18 -2.39 -0.02 2.11 16
44 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16
45 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16
46 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16
47 H 0.11 1.88 6.44 -2.39 -0.02 1.86 16
48 H 0.08 2.14 8.07 -2.39 -0.02 2.13 16
49 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16
50 H 0.14 1.63 7.22 -2.39 -0.02 1.62 16
51 H 0.05 1.38 7.29 -2.39 -0.02 1.37 16
52 H 0.03 0.90 5.46 -2.39 -0.01 0.89 16
53 H 0.05 1.15 7.97 -2.38 -0.02 1.13 16
54 H 0.07 1.30 7.32 -2.39 -0.02 1.28 16
Total: -1.00 -70.88 410.38 3.86 -67.02
By element:
Atomic # 1 Polarization: 13.35 SS G_CDS: 0.87 Total: 14.23 kcal
Atomic # 6 Polarization: -1.84 SS G_CDS: 6.45 Total: 4.61 kcal
Atomic # 7 Polarization: -100.08 SS G_CDS: -5.45 Total: -105.53 kcal
Atomic # 8 Polarization: -25.97 SS G_CDS: -0.04 Total: -26.01 kcal
Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal
Total: -70.88 3.86 -67.02 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000114730075.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.569 kcal
(2) G-P(sol) polarization free energy of solvation -70.880 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.310 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.021 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.452 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds