Wall clock time and date at job start Tue Mar 31 2020 19:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46892 * 111.00188 * 2 1 4 4 C 1.46904 * 110.99429 * 123.95386 * 2 1 3 5 5 C 1.53005 * 109.46983 * 75.23963 * 4 2 1 6 6 C 1.52996 * 109.47197 * 55.11691 * 5 4 2 7 7 O 1.42904 * 109.47022 * 295.11261 * 5 4 2 8 8 C 1.52997 * 109.46796 * 175.11632 * 5 4 2 9 9 N 1.46897 * 109.47010 * 184.99959 * 8 5 4 10 10 C 1.46903 * 111.00100 * 179.97438 * 9 8 5 11 11 C 1.50697 * 109.47195 * 180.02562 * 10 9 8 12 12 C 1.38290 * 119.92279 * 269.72805 * 11 10 9 13 13 C 1.38113 * 120.07266 * 179.72445 * 12 11 10 14 14 C 1.38912 * 119.92122 * 0.55150 * 13 12 11 15 15 N 1.39681 * 120.07259 * 179.75113 * 14 13 12 16 16 C 1.46496 * 120.00172 * 179.97438 * 15 14 13 17 17 C 1.46498 * 119.99752 * 359.96876 * 15 14 13 18 18 C 1.50701 * 109.47352 * 90.00244 * 17 15 14 19 19 H 1.08009 * 119.99595 * 0.02562 * 18 17 15 20 20 C 1.37870 * 120.00631 * 179.97438 * 18 17 15 21 21 N 1.31515 * 120.00310 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99714 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47246 * 89.99458 * 22 20 18 24 24 H 1.48500 * 109.47114 * 209.99374 * 22 20 18 25 25 H 1.48499 * 109.46956 * 329.99851 * 22 20 18 26 26 C 1.38909 * 119.85624 * 359.71895 * 14 13 12 27 27 C 1.38107 * 119.91996 * 0.02562 * 26 14 13 28 28 H 1.09001 * 109.46375 * 53.13491 * 1 2 3 29 29 H 1.08996 * 109.47349 * 173.13443 * 1 2 3 30 30 H 1.08997 * 109.47258 * 293.14166 * 1 2 3 31 31 H 1.09005 * 109.47530 * 63.95281 * 3 2 1 32 32 H 1.09004 * 109.47216 * 183.94754 * 3 2 1 33 33 H 1.08999 * 109.47522 * 303.95171 * 3 2 1 34 34 H 1.09002 * 109.46533 * 195.23502 * 4 2 1 35 35 H 1.09003 * 109.47314 * 315.23922 * 4 2 1 36 36 H 1.08992 * 109.47643 * 59.99715 * 6 5 4 37 37 H 1.09006 * 109.47155 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.47010 * 299.99723 * 6 5 4 39 39 H 0.96696 * 114.00000 * 299.99963 * 7 5 4 40 40 H 1.08997 * 109.47111 * 304.99630 * 8 5 4 41 41 H 1.09002 * 109.47625 * 64.99898 * 8 5 4 42 42 H 1.00903 * 111.00335 * 56.04360 * 9 8 5 43 43 H 1.08994 * 109.47330 * 300.00034 * 10 9 8 44 44 H 1.09004 * 109.47006 * 59.99907 * 10 9 8 45 45 H 1.07998 * 119.96380 * 359.97438 * 12 11 10 46 46 H 1.07997 * 120.03965 * 180.26962 * 13 12 11 47 47 H 1.08998 * 109.47004 * 89.99568 * 16 15 14 48 48 H 1.08999 * 109.47211 * 209.99537 * 16 15 14 49 49 H 1.08998 * 109.46968 * 329.99596 * 16 15 14 50 50 H 1.08999 * 109.46971 * 210.00329 * 17 15 14 51 51 H 1.09002 * 109.47380 * 330.00257 * 17 15 14 52 52 H 0.97003 * 120.00060 * 180.02562 * 21 20 18 53 53 H 1.07992 * 120.04091 * 179.97438 * 26 14 13 54 54 H 1.08002 * 119.95789 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.8350 -2.2626 0.8627 6 6 2.5057 -2.6115 -0.4674 7 8 0.4452 -2.5882 0.7953 8 6 2.4918 -3.0615 1.9902 9 7 2.4435 -4.4938 1.6679 10 6 3.0672 -5.2939 2.7304 11 6 2.9994 -6.7543 2.3650 12 6 1.9121 -7.5137 2.7568 13 6 1.8441 -8.8511 2.4187 14 6 2.8749 -9.4359 1.6942 15 7 2.8118 -10.7895 1.3551 16 6 3.8996 -11.4045 0.5905 17 6 1.6579 -11.5940 1.7642 18 6 0.5996 -11.5356 0.6930 19 1 0.7697 -10.9572 -0.2032 20 6 -0.5854 -12.2211 0.8563 21 7 -1.5088 -12.1705 -0.0788 22 14 -0.8794 -13.2219 2.4060 23 1 -1.5214 -12.3646 3.4346 24 1 -1.7684 -14.3694 2.0929 25 1 0.4180 -13.7273 2.9224 26 6 3.9683 -8.6716 1.3071 27 6 4.0274 -7.3336 1.6440 28 1 -0.3632 0.6166 -0.8222 29 1 -0.3634 -1.0202 -0.1228 30 1 -0.3633 0.4039 0.9449 31 1 1.7045 1.8724 0.9233 32 1 3.0829 1.3431 -0.0707 33 1 1.5900 1.9163 -0.8524 34 1 3.0513 -0.5330 1.2751 35 1 1.4443 -0.5013 2.0401 36 1 3.5657 -2.3632 -0.4160 37 1 2.3918 -3.6778 -0.6630 38 1 2.0377 -2.0424 -1.2706 39 1 -0.0443 -2.3930 1.6061 40 1 3.5302 -2.7486 2.1000 41 1 1.9574 -2.8807 2.9228 42 1 2.8764 -4.6785 0.7753 43 1 4.1095 -4.9964 2.8449 44 1 2.5370 -5.1286 3.6684 45 1 1.1133 -7.0595 3.3243 46 1 0.9926 -9.4425 2.7213 47 1 4.6486 -11.7989 1.2772 48 1 3.5018 -12.2163 -0.0185 49 1 4.3577 -10.6560 -0.0560 50 1 1.9697 -12.6281 1.9109 51 1 1.2531 -11.2009 2.6967 52 1 -2.3426 -12.6525 0.0363 53 1 4.7716 -9.1233 0.7441 54 1 4.8774 -6.7388 1.3437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131563165.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:22 Heat of formation + Delta-G solvation = -22.823859 kcal Electronic energy + Delta-G solvation = -28976.228773 eV Core-core repulsion = 25140.451512 eV Total energy + Delta-G solvation = -3835.777262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.53054 -40.07741 -37.88380 -36.99371 -35.74034 -34.67607 -32.81930 -31.97234 -30.97475 -30.01639 -28.36152 -28.08307 -27.63080 -26.21726 -24.91698 -23.42889 -22.92662 -22.60300 -21.15014 -20.91257 -19.07790 -18.27726 -17.71597 -16.96895 -16.89753 -16.60369 -16.23215 -15.97721 -15.83617 -15.74100 -15.22490 -15.11660 -15.01863 -14.82208 -14.70880 -14.34066 -14.20668 -14.03390 -13.41058 -13.34720 -13.28187 -13.18438 -13.11321 -13.08833 -12.98994 -12.74964 -12.64381 -12.55940 -12.41387 -12.34932 -12.26336 -12.05986 -11.89581 -11.73488 -11.56427 -11.44046 -10.82296 -10.57111 -10.38534 -9.66234 -9.19894 -9.17343 -8.32986 -7.90369 -6.38404 0.71379 0.83454 1.33876 1.35120 1.45645 2.30582 2.54802 2.86542 3.00653 3.11481 3.43382 3.67505 3.95619 4.01182 4.07105 4.09864 4.16223 4.22821 4.33878 4.41533 4.44701 4.48864 4.52252 4.59907 4.63108 4.69161 4.72235 4.76383 4.77359 4.80242 4.80868 4.83328 4.91433 4.95714 5.02447 5.06816 5.09036 5.09851 5.13810 5.30581 5.35137 5.46002 5.48883 5.60904 5.64779 5.93345 6.07850 6.09976 6.15424 6.20049 6.27458 6.51742 6.60360 6.70395 6.87943 7.00069 7.26920 8.84574 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.002157 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.698503 B =12978.751355 C =13941.960393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.551 5.551 3 C 0.023 3.977 4 C 0.035 3.965 5 C 0.144 3.856 6 C -0.130 4.130 7 O -0.559 6.559 8 C 0.039 3.961 9 N -0.690 5.690 10 C 0.121 3.879 11 C -0.158 4.158 12 C -0.057 4.057 13 C -0.218 4.218 14 C 0.210 3.790 15 N -0.629 5.629 16 C 0.097 3.903 17 C 0.232 3.768 18 C -0.535 4.535 19 H 0.023 0.977 20 C 0.010 3.990 21 N -0.946 5.946 22 Si 0.948 3.052 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.242 1.242 26 C -0.216 4.216 27 C -0.063 4.063 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.024 0.976 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.378 0.622 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.341 0.659 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.121 0.879 46 H 0.099 0.901 47 H 0.062 0.938 48 H 0.055 0.945 49 H 0.073 0.927 50 H 0.036 0.964 51 H 0.029 0.971 52 H 0.268 0.732 53 H 0.133 0.867 54 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.002 24.555 6.796 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.275 5.275 3 C -0.125 4.125 4 C -0.094 4.094 5 C 0.102 3.898 6 C -0.187 4.187 7 O -0.365 6.365 8 C -0.091 4.091 9 N -0.323 5.323 10 C -0.007 4.007 11 C -0.160 4.160 12 C -0.076 4.076 13 C -0.241 4.241 14 C 0.105 3.895 15 N -0.337 5.337 16 C -0.046 4.046 17 C 0.109 3.891 18 C -0.574 4.574 19 H 0.041 0.959 20 C -0.188 4.188 21 N -0.586 5.586 22 Si 0.770 3.230 23 H -0.191 1.191 24 H -0.205 1.205 25 H -0.166 1.166 26 C -0.239 4.239 27 C -0.082 4.082 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.226 0.774 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.161 0.839 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.139 0.861 46 H 0.117 0.883 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.092 0.908 50 H 0.054 0.946 51 H 0.047 0.953 52 H 0.077 0.923 53 H 0.151 0.849 54 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.537 23.783 5.901 27.525 hybrid contribution -0.530 -0.057 1.150 1.268 sum 12.007 23.727 7.051 27.511 Atomic orbital electron populations 1.22675 0.86917 1.03894 0.99826 1.61870 1.08665 1.14044 1.42910 1.22453 1.01025 0.88375 1.00655 1.22756 1.01310 0.93635 0.91665 1.21198 0.81885 0.91340 0.95334 1.21566 0.99918 1.00837 0.96388 1.86608 1.20364 1.87988 1.41564 1.22593 0.99932 0.87975 0.98575 1.60439 1.61254 1.05303 1.05340 1.20627 0.97435 0.87965 0.94698 1.19562 0.95837 0.95988 1.04633 1.20812 0.97230 0.91990 0.97578 1.20813 0.99730 0.96875 1.06677 1.18223 0.94260 0.84257 0.92710 1.46687 1.21689 1.06776 1.58531 1.21631 0.89147 0.98291 0.95499 1.19332 0.84232 0.91177 0.94366 1.21661 1.01128 1.30056 1.04572 0.95867 1.25902 0.95266 0.97484 1.00172 1.70074 1.07993 1.44261 1.36297 0.85715 0.79620 0.78580 0.79069 1.19081 1.20500 1.16578 1.20795 0.99273 0.95309 1.08473 1.20936 0.98129 0.93525 0.95643 0.92036 0.89634 0.95727 0.95530 0.90789 0.91218 0.89196 0.93730 0.90661 0.93488 0.91904 0.77387 0.93242 0.90355 0.83874 0.93369 0.90589 0.86095 0.88300 0.91942 0.92641 0.90813 0.94594 0.95346 0.92329 0.84929 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.18 127.69 1.17 1.40 16 2 N -0.55 -8.29 3.98 -948.81 -3.77 -12.06 16 3 C 0.02 0.26 9.51 127.69 1.21 1.48 16 4 C 0.04 0.46 4.31 86.30 0.37 0.83 16 5 C 0.14 2.35 0.93 -10.79 -0.01 2.34 16 6 C -0.13 -2.43 8.18 71.98 0.59 -1.84 16 7 O -0.56 -11.38 9.99 -148.98 -1.49 -12.86 16 8 C 0.04 0.60 4.90 86.30 0.42 1.03 16 9 N -0.69 -14.78 6.36 -517.95 -3.30 -18.08 16 10 C 0.12 2.56 5.81 85.56 0.50 3.06 16 11 C -0.16 -4.48 5.39 -19.84 -0.11 -4.59 16 12 C -0.06 -1.95 9.69 22.25 0.22 -1.74 16 13 C -0.22 -9.05 9.21 22.40 0.21 -8.84 16 14 C 0.21 8.48 6.55 38.21 0.25 8.73 16 15 N -0.63 -26.79 2.99 -726.57 -2.17 -28.96 16 16 C 0.10 3.29 10.19 127.77 1.30 4.59 16 17 C 0.23 11.19 3.98 85.63 0.34 11.53 16 18 C -0.54 -31.45 9.94 25.60 0.25 -31.19 16 19 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 20 C 0.01 0.57 5.47 84.65 0.46 1.03 16 21 N -0.95 -60.07 13.96 21.44 0.30 -59.77 16 22 Si 0.95 43.70 27.47 68.60 1.88 45.58 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 26 C -0.22 -7.05 9.21 22.40 0.21 -6.85 16 27 C -0.06 -1.75 9.69 22.25 0.22 -1.53 16 28 H 0.06 0.90 8.07 -2.39 -0.02 0.89 16 29 H 0.09 1.59 5.54 -2.39 -0.01 1.58 16 30 H 0.02 0.33 8.03 -2.39 -0.02 0.32 16 31 H 0.03 0.28 8.14 -2.38 -0.02 0.26 16 32 H 0.07 0.72 8.07 -2.38 -0.02 0.70 16 33 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 34 H 0.09 0.96 7.90 -2.39 -0.02 0.94 16 35 H 0.04 0.52 7.93 -2.39 -0.02 0.50 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 1.04 6.51 -2.38 -0.02 1.03 16 38 H 0.06 1.35 7.48 -2.39 -0.02 1.33 16 39 H 0.38 5.58 9.04 -74.06 -0.67 4.91 16 40 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.34 7.67 6.60 -89.69 -0.59 7.08 16 43 H 0.05 0.84 8.08 -2.39 -0.02 0.82 16 44 H 0.08 1.55 8.08 -2.38 -0.02 1.53 16 45 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 46 H 0.10 4.56 6.14 -2.91 -0.02 4.54 16 47 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.05 1.99 8.07 -2.39 -0.02 1.97 16 49 H 0.07 2.20 6.20 -2.39 -0.01 2.19 16 50 H 0.04 1.66 7.13 -2.39 -0.02 1.65 16 51 H 0.03 1.37 5.63 -2.39 -0.01 1.36 16 52 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 53 H 0.13 3.75 6.14 -2.91 -0.02 3.73 16 54 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -72.15 419.58 -1.38 -73.53 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -0.44 Total: 33.20 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 7.60 Total: -20.57 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -8.94 Total: -118.87 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -1.49 Total: -12.86 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.58 kcal Total: -72.15 -1.38 -73.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131563165.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.702 kcal (2) G-P(sol) polarization free energy of solvation -72.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds