Wall clock time and date at job start Tue Mar 31 2020 18:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46916 * 2 1 4 4 C 1.52999 * 109.47037 * 170.79835 * 3 2 1 5 5 C 1.52997 * 109.47180 * 184.99594 * 4 3 2 6 6 C 1.53005 * 109.47060 * 290.80139 * 3 2 1 7 7 N 1.46893 * 109.47011 * 66.55195 * 6 3 2 8 8 C 1.46903 * 110.99716 * 85.74681 * 7 6 3 9 9 C 1.50696 * 109.47131 * 286.93533 * 8 7 6 10 10 H 1.08004 * 120.00189 * 356.62682 * 9 8 7 11 11 C 1.37879 * 120.00232 * 176.62801 * 9 8 7 12 12 N 1.31516 * 120.00218 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99849 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47173 * 89.99667 * 13 11 9 15 15 H 1.48498 * 109.47146 * 209.99973 * 13 11 9 16 16 H 1.48503 * 109.47255 * 330.00120 * 13 11 9 17 17 C 1.46904 * 111.00014 * 209.69415 * 7 6 3 18 18 C 1.50708 * 109.46646 * 66.05115 * 17 7 6 19 19 O 1.21278 * 119.99904 * 0.02562 * 18 17 7 20 20 N 1.34775 * 119.99722 * 179.97438 * 18 17 7 21 21 C 1.46501 * 119.99826 * 179.97438 * 20 18 17 22 22 C 1.53005 * 109.46918 * 60.00452 * 21 20 18 23 23 C 1.47204 * 109.47214 * 300.00543 * 21 20 18 24 24 N 5.34912 * 102.88803 * 254.98698 * 2 1 3 25 25 C 1.53002 * 109.47056 * 180.02562 * 21 20 18 26 26 C 1.52997 * 117.51690 * 116.28932 * 25 21 20 27 27 C 1.52999 * 117.49467 * 184.91758 * 25 21 20 28 28 H 1.08998 * 109.47259 * 181.82495 * 1 2 3 29 29 H 1.09008 * 109.47621 * 301.83150 * 1 2 3 30 30 H 1.08998 * 109.46849 * 61.82983 * 1 2 3 31 31 H 1.08994 * 109.47304 * 239.99734 * 2 1 3 32 32 H 1.08998 * 109.46632 * 119.99484 * 2 1 3 33 33 H 1.09004 * 109.47455 * 50.80229 * 3 2 1 34 34 H 1.08999 * 109.47390 * 305.00421 * 4 3 2 35 35 H 1.09011 * 109.46527 * 64.99838 * 4 3 2 36 36 H 1.08999 * 109.47585 * 299.99891 * 5 4 3 37 37 H 1.08994 * 109.47287 * 60.00566 * 5 4 3 38 38 H 1.09007 * 109.47274 * 180.02562 * 5 4 3 39 39 H 1.09002 * 109.46633 * 306.55399 * 6 3 2 40 40 H 1.09001 * 109.46620 * 186.55986 * 6 3 2 41 41 H 1.09000 * 109.47104 * 46.93744 * 8 7 6 42 42 H 1.09001 * 109.47283 * 166.93597 * 8 7 6 43 43 H 0.96996 * 119.99994 * 180.02562 * 12 11 9 44 44 H 1.08992 * 109.47126 * 306.05185 * 17 7 6 45 45 H 1.08999 * 109.47110 * 186.04560 * 17 7 6 46 46 H 0.96995 * 120.00123 * 0.02562 * 20 18 17 47 47 H 1.08997 * 109.47136 * 180.02562 * 22 21 20 48 48 H 1.09005 * 109.47067 * 299.99632 * 22 21 20 49 49 H 1.08992 * 109.47188 * 59.99924 * 22 21 20 50 50 H 1.08999 * 115.54494 * 330.58418 * 25 21 20 51 51 H 1.08998 * 117.49659 * 214.97087 * 26 25 21 52 52 H 1.08999 * 117.49860 * 359.97438 * 26 25 21 53 53 H 1.08990 * 117.50338 * 359.97051 * 27 25 21 54 54 H 1.09004 * 117.49626 * 144.99910 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5524 1.4487 0.2307 5 6 4.0435 2.8924 0.3550 6 6 1.7269 2.0941 -1.3485 7 7 0.2723 2.2304 -1.5005 8 6 -0.2079 3.4720 -0.8794 9 6 -0.1694 3.3309 0.6204 10 1 0.1250 2.3927 1.0672 11 6 -0.5102 4.3994 1.4224 12 7 -0.4762 4.2764 2.7314 13 14 -1.0203 6.0218 0.6498 14 1 -2.4904 6.0297 0.4400 15 1 -0.6429 7.1398 1.5514 16 1 -0.3331 6.1857 -0.6565 17 6 -0.1176 2.1646 -2.9154 18 6 0.1714 0.7864 -3.4524 19 8 0.6541 -0.0578 -2.7278 20 7 -0.1076 0.4919 -4.7377 21 6 0.1739 -0.8476 -5.2599 22 6 -0.6212 -1.8833 -4.4624 23 6 1.6130 -1.1308 -5.1344 24 7 2.7231 -1.3507 -5.0364 25 6 -0.2323 -0.9162 -6.7335 26 6 0.8745 -1.1603 -7.7612 27 6 -0.1240 -2.2723 -7.4336 28 1 -0.3633 -1.0271 0.0327 29 1 -0.3635 0.5420 0.8731 30 1 -0.3633 0.4852 -0.9059 31 1 1.8934 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.5487 2.0016 0.7964 34 1 3.7824 0.9064 1.1478 35 1 4.0502 0.9668 -0.6109 36 1 3.8136 3.4347 -0.5622 37 1 3.5457 3.3743 1.1964 38 1 5.1211 2.8969 0.5189 39 1 2.1196 1.4716 -2.1526 40 1 2.1909 3.0795 -1.3922 41 1 0.4315 4.3010 -1.1829 42 1 -1.2314 3.6665 -1.1999 43 1 -0.7163 5.0280 3.2955 44 1 0.4494 2.9021 -3.4832 45 1 -1.1831 2.3748 -3.0088 46 1 -0.4940 1.1671 -5.3171 47 1 -0.4115 -2.8800 -4.8507 48 1 -0.3315 -1.8343 -3.4128 49 1 -1.6868 -1.6736 -4.5554 50 1 -1.0550 -0.2634 -7.0251 51 1 0.7800 -0.6680 -8.7290 52 1 1.8925 -1.2716 -7.3877 53 1 0.2370 -3.1154 -6.8447 54 1 -0.8755 -2.5116 -8.1860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173552391.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:38 Heat of formation + Delta-G solvation = 17.532988 kcal Electronic energy + Delta-G solvation = -31459.388376 eV Core-core repulsion = 27625.361118 eV Total energy + Delta-G solvation = -3834.027258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.51611 -39.92273 -38.58112 -36.83434 -36.11256 -35.36476 -34.44484 -32.68780 -31.85279 -30.12684 -29.00105 -27.01334 -25.83506 -25.09991 -23.33623 -22.83376 -22.62227 -22.35312 -21.06015 -20.89335 -18.95374 -18.54551 -18.07382 -17.17786 -16.92171 -16.39178 -16.14703 -15.79306 -15.52701 -15.40033 -15.13841 -14.97275 -14.75067 -14.40794 -14.35289 -14.17106 -13.87895 -13.79122 -13.72692 -13.42383 -13.25399 -13.17255 -13.06525 -12.91526 -12.74520 -12.56758 -12.35469 -12.26763 -12.19645 -12.17216 -11.99887 -11.89242 -11.76566 -11.48456 -11.38572 -11.22101 -11.17346 -10.98667 -10.65998 -10.47232 -10.37293 -10.18159 -8.65928 -8.08773 -6.09574 1.38310 1.40918 1.43291 1.51101 1.70863 1.74521 2.28511 2.45722 2.67831 2.99444 3.22269 3.28944 3.54109 3.82268 3.96129 4.05994 4.08118 4.13144 4.28833 4.32237 4.36207 4.42924 4.49834 4.55221 4.69228 4.70868 4.76435 4.82122 4.84164 4.89902 4.90290 4.97476 5.00556 5.03305 5.04663 5.10779 5.14137 5.21989 5.26049 5.33053 5.36454 5.41770 5.43635 5.47781 5.60088 5.63478 5.70026 5.93282 6.19707 6.27786 6.42300 6.47467 6.62526 6.80872 7.06542 7.40512 7.51644 9.05206 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.014623 B = 0.003546 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.283673 B = 7894.454308 C = 8721.751424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.079 4.079 3 C -0.097 4.097 4 C -0.112 4.112 5 C -0.142 4.142 6 C 0.095 3.905 7 N -0.513 5.513 8 C 0.169 3.831 9 C -0.502 4.502 10 H 0.075 0.925 11 C 0.007 3.993 12 N -0.952 5.952 13 Si 0.932 3.068 14 H -0.268 1.268 15 H -0.297 1.297 16 H -0.248 1.248 17 C 0.026 3.974 18 C 0.510 3.490 19 O -0.523 6.523 20 N -0.708 5.708 21 C 0.311 3.689 22 C -0.158 4.158 23 C 0.225 3.775 24 N -0.474 5.474 25 C -0.149 4.149 26 C -0.192 4.192 27 C -0.154 4.154 28 H 0.014 0.986 29 H 0.011 0.989 30 H 0.114 0.886 31 H 0.051 0.949 32 H 0.021 0.979 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.021 0.979 41 H -0.009 1.009 42 H 0.037 0.963 43 H 0.260 0.740 44 H 0.074 0.926 45 H 0.127 0.873 46 H 0.426 0.574 47 H 0.079 0.921 48 H 0.057 0.943 49 H 0.102 0.898 50 H 0.167 0.833 51 H 0.122 0.878 52 H 0.065 0.935 53 H 0.088 0.912 54 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.030 -7.835 -24.589 25.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 C -0.116 4.116 4 C -0.150 4.150 5 C -0.199 4.199 6 C -0.033 4.033 7 N -0.237 5.237 8 C 0.042 3.958 9 C -0.540 4.540 10 H 0.093 0.907 11 C -0.189 4.189 12 N -0.594 5.594 13 Si 0.758 3.242 14 H -0.193 1.193 15 H -0.224 1.224 16 H -0.172 1.172 17 C -0.105 4.105 18 C 0.297 3.703 19 O -0.398 6.398 20 N -0.366 5.366 21 C 0.221 3.779 22 C -0.217 4.217 23 C -0.094 4.094 24 N -0.150 5.150 25 C -0.168 4.168 26 C -0.229 4.229 27 C -0.192 4.192 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.132 0.868 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.008 0.992 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.145 0.855 46 H 0.266 0.734 47 H 0.098 0.902 48 H 0.076 0.924 49 H 0.121 0.879 50 H 0.184 0.816 51 H 0.140 0.860 52 H 0.083 0.917 53 H 0.106 0.894 54 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.260 -9.045 -23.513 25.224 hybrid contribution 0.005 1.847 0.136 1.852 sum -1.255 -7.197 -23.377 24.492 Atomic orbital electron populations 1.21928 0.95485 0.97517 1.03887 1.21118 0.96962 0.95276 0.98323 1.21497 0.94359 0.96808 0.98917 1.21490 0.95931 0.96950 1.00638 1.21710 1.00523 0.96515 1.01183 1.21854 0.87202 0.97182 0.97030 1.61703 1.13154 1.37197 1.11625 1.20128 0.95199 0.86300 0.94175 1.21694 1.42421 0.99370 0.90519 0.90719 1.25723 0.96138 1.02065 0.94967 1.70059 1.51831 1.32597 1.04939 0.85944 0.79354 0.79745 0.79204 1.19295 1.22361 1.17175 1.22168 1.04556 0.93312 0.90423 1.20957 0.77206 0.90483 0.81695 1.90751 1.42106 1.49614 1.57288 1.45909 1.66175 1.13125 1.11388 1.17332 0.79904 0.85269 0.95428 1.22228 1.01441 0.97572 1.00460 1.30022 0.95717 0.92723 0.90955 1.81156 1.14546 1.08900 1.10425 1.22470 1.03248 1.03953 0.87158 1.23205 0.94227 1.04511 1.00956 1.23132 1.02208 0.91040 1.02770 0.96737 0.96985 0.86839 0.93012 0.95999 0.90320 0.92817 0.92644 0.92987 0.94520 0.91682 0.92547 0.96137 0.99180 0.94501 0.93152 0.90815 0.85527 0.73399 0.90198 0.92377 0.87888 0.81602 0.85989 0.91661 0.89396 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.59 8.29 71.98 0.60 -5.00 16 2 C -0.08 -3.28 4.90 30.59 0.15 -3.13 16 3 C -0.10 -4.05 1.86 -10.79 -0.02 -4.07 16 4 C -0.11 -4.13 5.39 30.59 0.17 -3.96 16 5 C -0.14 -5.00 9.68 71.98 0.70 -4.30 16 6 C 0.10 3.63 3.70 86.31 0.32 3.95 16 7 N -0.51 -18.83 1.24 -905.36 -1.12 -19.95 16 8 C 0.17 7.20 3.80 85.56 0.32 7.53 16 9 C -0.50 -26.83 8.46 25.60 0.22 -26.61 16 10 H 0.08 4.44 3.58 -2.91 -0.01 4.43 16 11 C 0.01 0.40 5.47 84.65 0.46 0.86 16 12 N -0.95 -58.50 13.96 21.45 0.30 -58.21 16 13 Si 0.93 42.20 27.54 68.60 1.89 44.09 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 16 H -0.25 -10.25 6.45 99.48 0.64 -9.61 16 17 C 0.03 0.67 5.32 85.56 0.46 1.12 16 18 C 0.51 12.38 6.47 87.66 0.57 12.95 16 19 O -0.52 -16.82 7.63 -3.02 -0.02 -16.84 16 20 N -0.71 -10.52 5.08 -431.18 -2.19 -12.72 16 21 C 0.31 4.82 0.86 1.80 0.00 4.83 16 22 C -0.16 -2.54 8.14 71.98 0.59 -1.95 16 23 C 0.22 5.56 10.47 89.44 0.94 6.50 16 24 N -0.47 -14.88 18.33 20.01 0.37 -14.51 16 25 C -0.15 -1.17 5.34 -10.79 -0.06 -1.22 16 26 C -0.19 -2.00 9.67 30.59 0.30 -1.70 16 27 C -0.15 -1.16 9.55 30.59 0.29 -0.86 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.01 0.55 6.61 -2.38 -0.02 0.54 16 30 H 0.11 4.68 3.55 -2.39 -0.01 4.67 16 31 H 0.05 2.14 6.60 -2.39 -0.02 2.13 16 32 H 0.02 0.89 8.11 -2.39 -0.02 0.87 16 33 H 0.08 4.01 4.37 -2.38 -0.01 4.00 16 34 H 0.05 1.95 8.12 -2.39 -0.02 1.93 16 35 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.05 1.79 6.43 -2.39 -0.02 1.77 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.06 2.11 6.00 -2.39 -0.01 2.09 16 40 H 0.02 0.81 5.72 -2.39 -0.01 0.80 16 41 H -0.01 -0.41 6.53 -2.39 -0.02 -0.42 16 42 H 0.04 1.48 7.39 -2.39 -0.02 1.46 16 43 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.07 1.61 8.12 -2.39 -0.02 1.59 16 45 H 0.13 2.58 7.85 -2.39 -0.02 2.56 16 46 H 0.43 2.91 8.40 -92.71 -0.78 2.13 16 47 H 0.08 1.09 7.00 -2.39 -0.02 1.07 16 48 H 0.06 1.40 6.17 -2.38 -0.01 1.39 16 49 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.17 0.19 8.04 -2.39 -0.02 0.17 16 51 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.06 1.12 6.34 -2.39 -0.02 1.11 16 53 H 0.09 0.88 7.30 -2.39 -0.02 0.86 16 54 H 0.13 0.37 8.14 -2.38 -0.02 0.35 16 Total: -1.00 -74.52 399.33 5.28 -69.25 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.07 Total: 23.98 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 5.99 Total: -15.08 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -2.65 Total: -105.39 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.02 Total: -16.84 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.89 Total: 44.09 kcal Total: -74.52 5.28 -69.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173552391.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.778 kcal (2) G-P(sol) polarization free energy of solvation -74.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds