Wall clock time and date at job start Tue Mar 31 2020 18:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47063 * 2 1 4 4 C 1.52998 * 109.47300 * 119.99682 * 2 1 3 5 5 C 1.53012 * 109.51806 * 59.87585 * 4 2 1 6 6 C 1.53119 * 109.52518 * 179.97438 * 4 2 1 7 7 C 1.53035 * 109.27871 * 177.62558 * 6 4 2 8 8 N 1.46853 * 109.52676 * 300.82326 * 7 6 4 9 9 C 1.46889 * 111.00065 * 185.83707 * 8 7 6 10 10 C 1.50706 * 109.47109 * 170.00240 * 9 8 7 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46877 * 269.72057 * 13 12 10 15 15 H 1.08005 * 119.99817 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00081 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99848 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00321 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46844 * 60.00490 * 18 16 14 20 20 H 1.48496 * 109.47153 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47045 * 300.00555 * 18 16 14 22 22 C 1.46499 * 120.00036 * 359.72107 * 12 10 9 23 23 C 1.53001 * 109.47147 * 270.27655 * 22 12 10 24 24 C 1.47198 * 109.47000 * 179.97438 * 23 22 12 25 25 N 9.00370 * 147.75656 * 182.94504 * 4 1 2 26 26 C 1.46846 * 111.19224 * 61.74291 * 8 7 6 27 27 C 1.53042 * 109.52374 * 298.25518 * 26 8 7 28 28 H 1.09008 * 109.46956 * 299.99902 * 1 2 3 29 29 H 1.09003 * 109.47250 * 59.99777 * 1 2 3 30 30 H 1.09000 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47010 * 240.00188 * 2 1 3 32 32 H 1.09006 * 109.46940 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47232 * 300.00068 * 3 2 1 34 34 H 1.08998 * 109.47054 * 60.00215 * 3 2 1 35 35 H 1.09000 * 109.46615 * 180.12793 * 5 4 2 36 36 H 1.08999 * 109.46650 * 300.12487 * 5 4 2 37 37 H 1.08993 * 109.47153 * 60.12749 * 5 4 2 38 38 H 1.09001 * 109.49570 * 57.68756 * 6 4 2 39 39 H 1.09000 * 109.53845 * 297.58984 * 6 4 2 40 40 H 1.09003 * 109.46463 * 180.81046 * 7 6 4 41 41 H 1.08996 * 109.46506 * 60.84122 * 7 6 4 42 42 H 1.09004 * 109.47256 * 50.00607 * 9 8 7 43 43 H 1.08998 * 109.47820 * 290.00417 * 9 8 7 44 44 H 1.09000 * 109.46803 * 29.71536 * 13 12 10 45 45 H 1.09000 * 109.47214 * 149.72329 * 13 12 10 46 46 H 0.96998 * 119.99944 * 179.97438 * 17 16 14 47 47 H 1.08994 * 109.47173 * 30.28203 * 22 12 10 48 48 H 1.09005 * 109.47077 * 150.28374 * 22 12 10 49 49 H 1.09003 * 109.47272 * 300.00321 * 23 22 12 50 50 H 1.08997 * 109.47273 * 60.00010 * 23 22 12 51 51 H 1.08995 * 109.46598 * 58.27286 * 26 8 7 52 52 H 1.09007 * 109.46189 * 178.24635 * 26 8 7 53 53 H 1.09001 * 109.50572 * 299.24197 * 27 26 8 54 54 H 1.09000 * 109.53585 * 179.13988 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5280 -2.1631 1.2520 6 6 3.5712 -0.7224 1.2501 7 6 4.0752 -1.3924 2.5304 8 7 3.5677 -0.6621 3.6991 9 6 4.1428 -1.1930 4.9421 10 6 3.7985 -0.2755 6.0869 11 8 3.1393 0.7227 5.8869 12 7 4.2239 -0.5636 7.3329 13 6 3.8887 0.3281 8.4459 14 6 4.9668 1.3702 8.5969 15 1 5.8165 1.3686 7.9302 16 6 4.8680 2.3261 9.5855 17 7 3.8330 2.3283 10.3971 18 14 6.2047 3.6174 9.7732 19 1 6.3096 4.4070 8.5199 20 1 5.8649 4.5212 10.9013 21 1 7.5025 2.9500 10.0479 22 6 5.0159 -1.7720 7.5754 23 6 4.0800 -2.9397 7.8941 24 6 4.8758 -4.1539 8.1372 25 7 5.4882 -5.0913 8.3259 26 6 2.1002 -0.6879 3.7451 27 6 1.5373 0.0032 2.5010 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.8900 -2.6754 2.1434 36 1 0.4381 -2.1615 1.2512 37 1 1.8914 -2.6793 0.3635 38 1 3.9358 0.3040 1.2087 39 1 3.9358 -1.2735 0.3832 40 1 5.1651 -1.3821 2.5409 41 1 3.7216 -2.4228 2.5645 42 1 5.2263 -1.2585 4.8422 43 1 3.7353 -2.1851 5.1364 44 1 2.9358 0.8177 8.2449 45 1 3.8124 -0.2517 9.3657 46 1 3.7637 3.0006 11.0928 47 1 5.6009 -2.0074 6.6864 48 1 5.6868 -1.6037 8.4178 49 1 3.4950 -2.7042 8.7832 50 1 3.4091 -3.1080 7.0518 51 1 1.7559 -1.7216 3.7734 52 1 1.7556 -0.1658 4.6378 53 1 1.8700 1.0410 2.4793 54 1 0.4481 -0.0293 2.5275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186201835.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:12 Heat of formation + Delta-G solvation = -35.392081 kcal Electronic energy + Delta-G solvation = -30459.910025 eV Core-core repulsion = 26623.587764 eV Total energy + Delta-G solvation = -3836.322261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.33836 -40.33184 -38.01669 -37.15735 -36.48529 -34.84432 -32.88839 -32.12819 -31.72958 -30.19447 -29.18092 -27.91023 -26.59489 -25.28813 -24.65524 -24.15195 -23.51526 -21.38276 -19.87874 -18.80002 -18.74235 -18.31225 -17.82347 -17.16218 -16.68505 -16.41619 -16.14007 -15.75457 -15.62385 -15.55159 -15.31603 -15.08314 -14.89694 -14.60200 -14.35529 -14.28400 -14.06126 -13.62800 -13.53416 -13.43720 -13.30108 -13.14648 -12.96697 -12.86427 -12.74753 -12.67402 -12.55520 -12.50344 -12.39058 -12.37161 -12.17767 -12.13457 -11.82773 -11.74184 -11.65073 -11.59785 -11.06895 -10.88580 -10.80566 -10.56542 -10.31024 -9.41948 -9.01158 -8.15974 -6.27991 1.40534 1.43702 1.50240 1.70179 1.84093 1.97153 2.27475 2.45529 3.01097 3.15144 3.22331 3.76857 3.82734 3.86694 3.92334 4.06488 4.13073 4.28091 4.30015 4.36015 4.41575 4.44910 4.51303 4.57543 4.62695 4.65461 4.69288 4.80841 4.84624 4.87855 4.89716 4.93378 5.06233 5.06482 5.09940 5.13256 5.13682 5.16551 5.22758 5.27199 5.34181 5.36565 5.37117 5.43257 5.54071 5.64643 5.66537 5.72998 5.91965 6.16151 6.16853 6.33942 6.60410 6.80170 6.87670 7.38019 7.62807 8.90302 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.010020 B = 0.003274 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.656731 B = 8550.885961 C =10514.597485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.151 4.151 4 C -0.052 4.052 5 C -0.142 4.142 6 C -0.105 4.105 7 C 0.056 3.944 8 N -0.542 5.542 9 C 0.045 3.955 10 C 0.501 3.499 11 O -0.569 6.569 12 N -0.601 5.601 13 C 0.263 3.737 14 C -0.539 4.539 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.926 5.926 18 Si 0.956 3.044 19 H -0.280 1.280 20 H -0.282 1.282 21 H -0.263 1.263 22 C 0.115 3.885 23 C -0.037 4.037 24 C 0.246 3.754 25 N -0.488 5.488 26 C 0.056 3.944 27 C -0.100 4.100 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.002 0.998 45 H 0.032 0.968 46 H 0.265 0.735 47 H 0.105 0.895 48 H 0.082 0.918 49 H 0.119 0.881 50 H 0.133 0.867 51 H 0.042 0.958 52 H 0.057 0.943 53 H 0.050 0.950 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 -11.586 -20.283 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 C -0.209 4.209 4 C -0.052 4.052 5 C -0.199 4.199 6 C -0.143 4.143 7 C -0.071 4.071 8 N -0.267 5.267 9 C -0.085 4.085 10 C 0.290 3.710 11 O -0.447 6.447 12 N -0.333 5.333 13 C 0.142 3.858 14 C -0.578 4.578 15 H 0.070 0.930 16 C -0.188 4.188 17 N -0.566 5.566 18 Si 0.781 3.219 19 H -0.206 1.206 20 H -0.207 1.207 21 H -0.188 1.188 22 C -0.010 4.010 23 C -0.078 4.078 24 C -0.071 4.071 25 N -0.166 5.166 26 C -0.072 4.072 27 C -0.137 4.137 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.136 0.864 43 H 0.106 0.894 44 H 0.020 0.980 45 H 0.050 0.950 46 H 0.074 0.926 47 H 0.124 0.876 48 H 0.101 0.899 49 H 0.137 0.863 50 H 0.151 0.849 51 H 0.060 0.940 52 H 0.075 0.925 53 H 0.069 0.931 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.887 -11.879 -19.991 23.433 hybrid contribution 0.009 0.849 0.877 1.221 sum -2.878 -11.031 -19.114 22.255 Atomic orbital electron populations 1.21938 0.95180 1.02093 1.01494 1.21063 0.95822 0.95607 0.97259 1.21949 1.01130 0.96566 1.01210 1.20563 0.95037 0.95560 0.94054 1.21980 1.01215 0.94816 1.01889 1.21691 0.94710 1.01249 0.96645 1.22206 1.00072 0.95423 0.89376 1.61462 1.07713 1.55996 1.01537 1.22047 1.02521 0.95818 0.88139 1.21169 0.79214 0.86505 0.84124 1.90643 1.40667 1.29648 1.83790 1.48105 1.53109 1.24046 1.08016 1.18736 0.94688 0.88332 0.84050 1.21740 1.07400 1.13770 1.14860 0.92956 1.25710 0.97953 0.99565 0.95557 1.70018 1.30612 1.36391 1.19621 0.85641 0.79857 0.79021 0.77336 1.20626 1.20745 1.18753 1.21493 0.92895 0.82305 1.04329 1.19823 0.96581 0.84596 1.06833 1.29103 0.92712 0.93801 0.91503 1.81230 1.11006 1.13437 1.10934 1.22150 0.86879 0.98828 0.99310 1.21630 0.99503 0.99220 0.93374 0.93358 0.92529 0.91776 0.90428 0.92626 0.92445 0.93788 0.92880 0.92245 0.91674 0.92240 0.89841 0.90167 0.93291 0.86415 0.89360 0.97991 0.94973 0.92633 0.87648 0.89909 0.86289 0.84913 0.94028 0.92500 0.93106 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.49 71.98 0.61 -1.56 16 2 C -0.08 -1.21 2.29 -10.79 -0.02 -1.23 16 3 C -0.15 -2.66 8.49 71.98 0.61 -2.05 16 4 C -0.05 -0.88 0.32 -52.10 -0.02 -0.90 16 5 C -0.14 -1.99 7.55 71.99 0.54 -1.45 16 6 C -0.11 -1.81 4.59 30.65 0.14 -1.67 16 7 C 0.06 1.02 5.21 86.32 0.45 1.47 16 8 N -0.54 -13.83 4.40 -900.92 -3.96 -17.79 16 9 C 0.05 1.10 4.00 85.56 0.34 1.44 16 10 C 0.50 18.19 7.35 87.66 0.64 18.83 16 11 O -0.57 -27.08 13.90 -3.03 -0.04 -27.12 16 12 N -0.60 -21.53 2.46 -826.13 -2.03 -23.55 16 13 C 0.26 12.77 5.17 85.63 0.44 13.21 16 14 C -0.54 -29.39 9.39 25.60 0.24 -29.15 16 15 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 16 C 0.01 0.62 5.46 84.65 0.46 1.09 16 17 N -0.93 -54.20 13.29 21.45 0.28 -53.91 16 18 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 22 C 0.11 2.77 5.16 86.38 0.45 3.22 16 23 C -0.04 -0.67 6.02 28.79 0.17 -0.49 16 24 C 0.25 5.26 15.43 89.45 1.38 6.64 16 25 N -0.49 -13.31 18.53 20.00 0.37 -12.94 16 26 C 0.06 1.46 4.86 86.33 0.42 1.88 16 27 C -0.10 -2.30 4.17 30.65 0.13 -2.17 16 28 H 0.05 0.80 6.50 -2.38 -0.02 0.79 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.82 6.43 -2.39 -0.02 0.80 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.99 6.38 -2.38 -0.02 0.98 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.04 0.92 6.38 -2.39 -0.02 0.91 16 35 H 0.05 0.78 4.92 -2.39 -0.01 0.77 16 36 H 0.06 0.81 6.43 -2.39 -0.02 0.80 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 1.23 6.32 -2.39 -0.02 1.22 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.33 8.02 -2.39 -0.02 1.31 16 41 H 0.05 0.75 6.51 -2.39 -0.02 0.73 16 42 H 0.12 2.38 7.25 -2.39 -0.02 2.36 16 43 H 0.09 1.53 7.15 -2.39 -0.02 1.51 16 44 H 0.00 0.11 7.41 -2.39 -0.02 0.09 16 45 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 46 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 47 H 0.11 1.92 6.45 -2.39 -0.02 1.90 16 48 H 0.08 2.23 8.07 -2.38 -0.02 2.21 16 49 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.13 1.71 7.20 -2.39 -0.02 1.69 16 51 H 0.04 0.92 6.51 -2.39 -0.02 0.90 16 52 H 0.06 1.96 5.78 -2.38 -0.01 1.94 16 53 H 0.05 1.43 6.31 -2.39 -0.02 1.41 16 54 H 0.07 1.47 6.58 -2.39 -0.02 1.45 16 Total: -1.00 -73.00 407.04 4.53 -68.47 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.89 Total: 13.58 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 6.99 Total: 7.11 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -5.33 Total: -108.20 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.04 Total: -27.12 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -73.00 4.53 -68.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186201835.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.073 kcal (2) G-P(sol) polarization free energy of solvation -72.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds