Wall clock time and date at job start Tue Mar 31 2020 18:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47159 * 2 1 4 4 C 1.53003 * 109.47493 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46810 * 304.99869 * 4 3 2 6 6 C 1.52998 * 109.47555 * 184.99896 * 4 3 2 7 7 N 1.46503 * 109.46679 * 64.99770 * 4 3 2 8 8 C 1.34782 * 119.99670 * 204.72673 * 7 4 3 9 9 O 1.21284 * 119.99824 * 0.27905 * 8 7 4 10 10 C 1.50699 * 119.99970 * 180.27567 * 8 7 4 11 11 H 1.08993 * 109.50189 * 300.08014 * 10 8 7 12 12 C 1.53121 * 109.50193 * 60.19778 * 10 8 7 13 13 C 1.53119 * 109.15929 * 177.59457 * 12 10 8 14 14 C 1.53033 * 109.27971 * 302.34724 * 13 12 10 15 15 N 1.46847 * 109.52687 * 59.17817 * 14 13 12 16 16 C 1.46894 * 111.00102 * 174.16303 * 15 14 13 17 17 C 1.53011 * 109.47012 * 190.37241 * 16 15 14 18 18 H 1.09000 * 109.46761 * 303.65977 * 17 16 15 19 19 C 1.47198 * 109.46839 * 63.65546 * 17 16 15 20 20 N 8.49030 * 132.17424 * 216.78723 * 2 1 3 21 21 C 1.52999 * 109.47043 * 183.65495 * 17 16 15 22 22 C 1.50697 * 109.46973 * 174.99711 * 21 17 16 23 23 H 1.08004 * 120.00116 * 0.02562 * 22 21 17 24 24 C 1.37877 * 120.00086 * 179.97438 * 22 21 17 25 25 N 1.31511 * 120.00057 * 180.02562 * 24 22 21 26 26 Si 1.86806 * 119.99820 * 0.02562 * 24 22 21 27 27 H 1.48494 * 109.47014 * 89.99679 * 26 24 22 28 28 H 1.48498 * 109.47101 * 209.99835 * 26 24 22 29 29 H 1.48495 * 109.47085 * 329.99556 * 26 24 22 30 30 C 1.46848 * 111.19711 * 298.26278 * 15 14 13 31 31 H 1.08998 * 109.46917 * 300.00282 * 1 2 3 32 32 H 1.09001 * 109.47448 * 60.00266 * 1 2 3 33 33 H 1.09001 * 109.47101 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46917 * 239.99718 * 2 1 3 35 35 H 1.09005 * 109.47137 * 120.00138 * 2 1 3 36 36 H 1.08998 * 109.47436 * 60.00036 * 3 2 1 37 37 H 1.09005 * 109.47209 * 300.00094 * 3 2 1 38 38 H 1.09003 * 109.47040 * 299.99832 * 6 4 3 39 39 H 1.08996 * 109.47170 * 60.00024 * 6 4 3 40 40 H 1.08998 * 109.46836 * 179.97438 * 6 4 3 41 41 H 0.96991 * 120.00516 * 25.00611 * 7 4 3 42 42 H 1.09001 * 109.52568 * 297.50010 * 12 10 8 43 43 H 1.09005 * 109.52176 * 57.69104 * 12 10 8 44 44 H 1.09000 * 109.50097 * 182.40114 * 13 12 10 45 45 H 1.08997 * 109.50408 * 62.28957 * 13 12 10 46 46 H 1.09004 * 109.46165 * 299.16130 * 14 13 12 47 47 H 1.08998 * 109.45795 * 179.19073 * 14 13 12 48 48 H 1.09003 * 109.47374 * 310.36720 * 16 15 14 49 49 H 1.08995 * 109.47446 * 70.37337 * 16 15 14 50 50 H 1.09000 * 109.47229 * 295.00071 * 21 17 16 51 51 H 1.09006 * 109.47232 * 54.99968 * 21 17 16 52 52 H 0.96997 * 119.99815 * 180.02562 * 25 24 22 53 53 H 1.09010 * 109.46024 * 301.72048 * 30 15 14 54 54 H 1.08999 * 109.46006 * 181.75478 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0801 2.8795 0.1250 7 7 4.0578 0.8589 -1.2528 8 6 5.2820 0.2973 -1.3026 9 8 5.9777 0.2706 -0.3095 10 6 5.7862 -0.2974 -2.5921 11 1 5.1163 -1.0958 -2.9111 12 6 5.8381 0.7887 -3.6702 13 6 6.4077 0.1904 -4.9594 14 6 7.7949 -0.3908 -4.6768 15 7 7.6917 -1.4254 -3.6398 16 6 8.9804 -2.1018 -3.4409 17 6 8.7792 -3.3316 -2.5531 18 1 8.3185 -3.0293 -1.6126 19 6 7.9041 -4.2951 -3.2406 20 7 7.2303 -5.0392 -3.7681 21 6 10.1340 -3.9842 -2.2710 22 6 9.9513 -5.1210 -1.2987 23 1 8.9672 -5.3549 -0.9202 24 6 11.0402 -5.8631 -0.8932 25 7 10.8807 -6.8554 -0.0451 26 14 12.7422 -5.4589 -1.5486 27 1 13.3955 -4.4706 -0.6532 28 1 13.5600 -6.6973 -1.5994 29 1 12.6240 -4.8875 -2.9141 30 6 7.1915 -0.8645 -2.3782 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 3.7164 3.4691 -0.7166 39 1 3.7172 3.3137 1.0566 40 1 5.1701 2.8794 0.1250 41 1 3.5014 0.8803 -2.0470 42 1 4.8323 1.1652 -3.8567 43 1 6.4772 1.6053 -3.3341 44 1 6.4870 0.9691 -5.7180 45 1 5.7477 -0.6002 -5.3163 46 1 8.4582 0.4030 -4.3332 47 1 8.1972 -0.8304 -5.5895 48 1 9.3807 -2.4121 -4.4061 49 1 9.6796 -1.4175 -2.9605 50 1 10.5542 -4.3659 -3.2015 51 1 10.8112 -3.2451 -1.8428 52 1 11.6469 -7.3772 0.2404 53 1 7.8576 -0.0684 -2.0453 54 1 7.1556 -1.6481 -1.6214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246613577.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:08 Heat of formation + Delta-G solvation = -64.758979 kcal Electronic energy + Delta-G solvation = -29611.085229 eV Core-core repulsion = 25773.489524 eV Total energy + Delta-G solvation = -3837.595705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.39152 -39.79696 -38.04523 -37.54064 -35.79167 -34.87851 -34.34858 -33.15739 -32.16137 -31.25190 -29.02182 -27.59360 -25.89159 -25.28755 -23.48068 -23.03683 -22.78698 -21.88988 -21.50358 -20.58341 -18.96627 -18.35572 -18.04703 -17.46248 -16.77800 -16.24387 -16.06286 -15.82870 -15.75124 -15.51469 -15.21815 -15.07982 -14.79483 -14.58393 -14.44706 -14.39713 -14.18262 -13.83917 -13.82220 -13.59745 -13.50197 -13.25638 -13.15041 -13.07725 -12.91538 -12.79981 -12.42731 -12.37632 -12.34228 -12.09035 -11.87923 -11.82430 -11.77917 -11.68683 -11.63583 -11.57097 -11.51334 -11.38570 -11.05269 -10.74526 -10.65654 -10.04990 -9.23966 -8.26047 -6.32036 1.41242 1.44002 1.54746 1.66227 2.04807 2.11689 2.17753 2.39985 2.95859 3.10221 3.30851 3.62620 3.70857 3.81399 3.89678 4.04222 4.08325 4.09680 4.26339 4.29062 4.31290 4.39160 4.42788 4.49345 4.57022 4.61365 4.64691 4.69692 4.76495 4.82630 4.83987 4.85780 4.88752 4.90260 5.00288 5.00650 5.04851 5.08494 5.13315 5.20268 5.22933 5.26670 5.29468 5.32464 5.42535 5.45826 5.46404 5.61385 5.62030 6.05871 6.20742 6.25728 6.58922 6.74950 6.89060 7.30611 7.32173 8.91269 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.002614 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.072251 B =10708.636759 C =11521.596115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.115 4.115 4 C 0.137 3.863 5 H 0.057 0.943 6 C -0.157 4.157 7 N -0.709 5.709 8 C 0.518 3.482 9 O -0.583 6.583 10 C -0.099 4.099 11 H 0.104 0.896 12 C -0.100 4.100 13 C -0.109 4.109 14 C 0.049 3.951 15 N -0.551 5.551 16 C 0.071 3.929 17 C 0.022 3.978 18 H 0.100 0.900 19 C 0.266 3.734 20 N -0.509 5.509 21 C -0.002 4.002 22 C -0.533 4.533 23 H 0.025 0.975 24 C 0.002 3.998 25 N -0.955 5.955 26 Si 0.951 3.049 27 H -0.259 1.259 28 H -0.292 1.292 29 H -0.234 1.234 30 C 0.074 3.926 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.413 0.587 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.042 0.958 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.072 0.928 50 H 0.033 0.967 51 H 0.058 0.942 52 H 0.265 0.735 53 H 0.038 0.962 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.456 27.260 -8.283 32.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.152 4.152 4 C 0.032 3.968 5 H 0.075 0.925 6 C -0.215 4.215 7 N -0.362 5.362 8 C 0.305 3.695 9 O -0.463 6.463 10 C -0.120 4.120 11 H 0.122 0.878 12 C -0.138 4.138 13 C -0.147 4.147 14 C -0.078 4.078 15 N -0.276 5.276 16 C -0.058 4.058 17 C 0.001 3.999 18 H 0.118 0.882 19 C -0.051 4.051 20 N -0.187 5.187 21 C -0.041 4.041 22 C -0.571 4.571 23 H 0.043 0.957 24 C -0.195 4.195 25 N -0.595 5.595 26 Si 0.773 3.227 27 H -0.184 1.184 28 H -0.219 1.219 29 H -0.157 1.157 30 C -0.054 4.054 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.054 0.946 41 H 0.250 0.750 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.113 0.887 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.101 0.899 48 H 0.113 0.887 49 H 0.091 0.909 50 H 0.051 0.949 51 H 0.076 0.924 52 H 0.074 0.926 53 H 0.057 0.943 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.265 25.664 -8.448 32.064 hybrid contribution 1.347 -0.189 0.852 1.605 sum -15.918 25.474 -7.596 30.984 Atomic orbital electron populations 1.21751 0.94799 1.01703 1.02470 1.21547 0.96638 0.96939 1.01526 1.21863 0.91663 0.97164 1.04548 1.21033 0.94997 0.94276 0.86478 0.92485 1.22111 1.00465 0.95587 1.03336 1.45979 1.16814 1.59132 1.14266 1.20888 0.81598 0.76985 0.90026 1.90715 1.57723 1.59359 1.38459 1.21288 0.97719 0.99948 0.93089 0.87756 1.21552 1.03124 0.95691 0.93455 1.21567 0.95419 1.00652 0.97073 1.22238 0.98255 0.92628 0.94662 1.61858 1.27424 1.30192 1.08118 1.22119 0.90514 0.92930 1.00261 1.19056 0.93349 0.90287 0.97257 0.88221 1.29144 0.91959 0.92308 0.91646 1.80882 1.12952 1.12160 1.12678 1.19578 0.92436 0.95445 0.96644 1.21383 0.94307 1.15187 1.26178 0.95699 1.26079 1.04366 0.94290 0.94738 1.70095 1.32564 1.21890 1.34985 0.85651 0.77970 0.78010 0.81040 1.18382 1.21879 1.15696 1.21773 0.94660 0.97875 0.91136 0.92269 0.91629 0.93304 0.92367 0.93640 0.89364 0.89293 0.90684 0.90575 0.94608 0.74957 0.88762 0.91738 0.88656 0.91359 0.93938 0.89882 0.88729 0.90948 0.94870 0.92382 0.92601 0.94331 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.82 16 2 C -0.13 -1.63 5.82 30.59 0.18 -1.45 16 3 C -0.11 -1.09 4.75 30.59 0.15 -0.94 16 4 C 0.14 2.07 2.57 44.99 0.12 2.19 16 5 H 0.06 1.25 7.58 -2.39 -0.02 1.24 16 6 C -0.16 -2.12 9.48 71.98 0.68 -1.44 16 7 N -0.71 -10.78 4.44 -442.51 -1.96 -12.75 16 8 C 0.52 11.90 7.12 87.66 0.62 12.53 16 9 O -0.58 -19.19 15.65 -3.04 -0.05 -19.24 16 10 C -0.10 -1.98 2.69 -11.49 -0.03 -2.01 16 11 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 12 C -0.10 -1.30 5.16 30.67 0.16 -1.14 16 13 C -0.11 -1.42 6.09 30.65 0.19 -1.24 16 14 C 0.05 0.86 5.46 86.32 0.47 1.33 16 15 N -0.55 -13.52 4.32 -896.35 -3.87 -17.39 16 16 C 0.07 1.90 4.34 86.31 0.37 2.27 16 17 C 0.02 0.83 2.12 -12.60 -0.03 0.80 16 18 H 0.10 3.84 6.29 -2.39 -0.02 3.82 16 19 C 0.27 11.38 13.63 89.46 1.22 12.60 16 20 N -0.51 -23.79 18.52 19.98 0.37 -23.42 16 21 C 0.00 -0.09 3.49 29.85 0.10 0.02 16 22 C -0.53 -30.21 9.15 25.60 0.23 -29.98 16 23 H 0.02 1.60 7.84 -2.91 -0.02 1.58 16 24 C 0.00 0.10 5.47 84.66 0.46 0.57 16 25 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 26 Si 0.95 42.81 27.47 68.60 1.88 44.70 16 27 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 29 H -0.23 -9.35 6.54 99.48 0.65 -8.70 16 30 C 0.07 1.93 3.87 86.32 0.33 2.26 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.79 7.75 -2.39 -0.02 0.77 16 35 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.41 3.69 8.08 -92.71 -0.75 2.94 16 42 H 0.09 0.71 7.66 -2.39 -0.02 0.69 16 43 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 47 H 0.08 1.37 8.01 -2.39 -0.02 1.35 16 48 H 0.09 2.33 7.98 -2.39 -0.02 2.31 16 49 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 50 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 51 H 0.06 2.24 7.57 -2.38 -0.02 2.22 16 52 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 53 H 0.04 1.04 8.08 -2.38 -0.02 1.02 16 54 H 0.06 1.86 6.14 -2.39 -0.01 1.84 16 Total: -1.00 -78.53 426.83 2.67 -75.86 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.05 Total: 17.35 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 5.95 Total: -4.46 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -5.16 Total: -114.20 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.05 Total: -19.24 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.70 kcal Total: -78.53 2.67 -75.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246613577.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.097 kcal (2) G-P(sol) polarization free energy of solvation -78.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds