Wall clock time and date at job start Tue Mar 31 2020 18:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46918 * 2 1 4 4 C 1.52995 * 109.46780 * 240.00241 * 2 1 3 5 5 C 1.50697 * 109.47177 * 119.99927 * 2 1 3 6 6 O 1.21277 * 120.00001 * 0.02562 * 5 2 1 7 7 N 1.34777 * 119.99701 * 179.97438 * 5 2 1 8 8 C 1.46505 * 119.99562 * 180.02562 * 7 5 2 9 9 C 1.53002 * 109.46781 * 180.02562 * 8 7 5 10 10 H 1.09002 * 109.50591 * 304.92191 * 9 8 7 11 11 C 1.53117 * 109.50168 * 65.00258 * 9 8 7 12 12 C 1.53121 * 109.15948 * 177.63052 * 11 9 8 13 13 C 1.53033 * 109.28249 * 302.34966 * 12 11 9 14 14 N 1.46842 * 109.52309 * 59.17468 * 13 12 11 15 15 C 1.46911 * 110.99801 * 174.16205 * 14 13 12 16 16 C 1.52997 * 109.46892 * 176.20198 * 15 14 13 17 17 H 1.08999 * 109.47852 * 301.80803 * 16 15 14 18 18 C 1.47208 * 109.46809 * 61.80730 * 16 15 14 19 19 N 8.81937 * 136.21686 * 156.80611 * 2 1 3 20 20 C 1.52995 * 109.46959 * 181.80295 * 16 15 14 21 21 C 1.50703 * 109.47318 * 175.00261 * 20 16 15 22 22 H 1.08000 * 119.99996 * 0.02562 * 21 20 16 23 23 C 1.37877 * 120.00116 * 180.02562 * 21 20 16 24 24 N 1.31516 * 119.99892 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00003 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47318 * 89.99885 * 25 23 21 27 27 H 1.48503 * 109.46657 * 209.99931 * 25 23 21 28 28 H 1.48503 * 109.47066 * 329.99500 * 25 23 21 29 29 C 1.46848 * 111.20244 * 298.25705 * 14 13 12 30 30 H 1.09003 * 109.47013 * 300.00201 * 1 2 3 31 31 H 1.08995 * 109.47362 * 59.99507 * 1 2 3 32 32 H 1.08993 * 109.47207 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46693 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.46921 * 299.99920 * 3 2 1 35 35 H 1.09000 * 109.47039 * 60.00384 * 3 2 1 36 36 H 1.09004 * 109.47537 * 299.99755 * 4 2 1 37 37 H 1.09002 * 109.47362 * 59.99924 * 4 2 1 38 38 H 1.08999 * 109.47069 * 180.02562 * 4 2 1 39 39 H 0.96995 * 120.00699 * 0.02562 * 7 5 2 40 40 H 1.09004 * 109.46931 * 60.00812 * 8 7 5 41 41 H 1.08991 * 109.47360 * 300.00441 * 8 7 5 42 42 H 1.09000 * 109.52424 * 57.72768 * 11 9 8 43 43 H 1.08997 * 109.57487 * 297.56577 * 11 9 8 44 44 H 1.08999 * 109.50223 * 182.40435 * 12 11 9 45 45 H 1.09010 * 109.50253 * 62.28981 * 12 11 9 46 46 H 1.09005 * 109.45734 * 299.15889 * 13 12 11 47 47 H 1.08996 * 109.45775 * 179.19100 * 13 12 11 48 48 H 1.09000 * 109.46479 * 56.20778 * 15 14 13 49 49 H 1.08994 * 109.46873 * 296.20681 * 15 14 13 50 50 H 1.09002 * 109.47540 * 295.00541 * 20 16 15 51 51 H 1.08998 * 109.47203 * 55.00638 * 20 16 15 52 52 H 0.97001 * 120.00132 * 180.02562 * 24 23 21 53 53 H 1.08993 * 109.46465 * 181.75765 * 29 14 13 54 54 H 1.08999 * 109.46065 * 301.73122 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2443 -1.1717 2.0285 7 7 3.3574 -0.8339 1.4434 8 6 3.8458 -1.5250 2.6393 9 6 5.3758 -1.5249 2.6393 10 1 5.7398 -1.9599 1.7085 11 6 5.8868 -0.0871 2.7658 12 6 7.4168 -0.1009 2.8246 13 6 7.8695 -0.9663 4.0028 14 7 7.3559 -2.3316 3.8346 15 6 7.8847 -3.2248 4.8743 16 6 7.2557 -4.6113 4.7237 17 1 6.1713 -4.5283 4.7962 18 6 7.6181 -5.1747 3.4128 19 7 7.8973 -5.6092 2.4034 20 6 7.7723 -5.5289 5.8336 21 6 7.0617 -6.8559 5.7598 22 1 6.3165 -7.0277 4.9972 23 6 7.3630 -7.8506 6.6658 24 7 6.7432 -9.0087 6.6010 25 14 8.6515 -7.5532 7.9852 26 1 8.0000 -6.9911 9.1955 27 1 9.3124 -8.8376 8.3300 28 1 9.6664 -6.5946 7.4789 29 6 5.8876 -2.3490 3.8230 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2073 -2.1392 38 1 3.1299 -0.7216 -1.2491 39 1 3.9878 -0.4653 0.8050 40 1 3.4822 -2.5527 2.6390 41 1 3.4827 -1.0115 3.5295 42 1 5.4913 0.3613 3.6772 43 1 5.5607 0.4936 1.9030 44 1 7.7851 0.9164 2.9576 45 1 7.8130 -0.5135 1.8967 46 1 7.4845 -0.5452 4.9316 47 1 8.9586 -0.9897 4.0387 48 1 7.6429 -2.8210 5.8574 49 1 8.9668 -3.3033 4.7698 50 1 8.8441 -5.6832 5.7081 51 1 7.5826 -5.0687 6.8032 52 1 6.9549 -9.7084 7.2386 53 1 5.5373 -3.3768 3.7284 54 1 5.5120 -1.9215 4.7527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247072890.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:51 Heat of formation + Delta-G solvation = -60.779705 kcal Electronic energy + Delta-G solvation = -29550.642930 eV Core-core repulsion = 25713.219780 eV Total energy + Delta-G solvation = -3837.423151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.31833 -40.36738 -38.20742 -36.68923 -36.43238 -35.56365 -34.47297 -32.89611 -32.17385 -28.98113 -28.22305 -28.20266 -27.15498 -25.94842 -23.87493 -23.63132 -22.88268 -22.28707 -20.84556 -20.19731 -18.93641 -18.24349 -17.80030 -17.12744 -17.00499 -16.47795 -16.15905 -15.89635 -15.60518 -15.42033 -15.23058 -15.01457 -14.85760 -14.55552 -14.54179 -14.39168 -14.13083 -13.94367 -13.64535 -13.48776 -13.31684 -13.23505 -13.14133 -13.04301 -12.98536 -12.82526 -12.78070 -12.63527 -12.34560 -12.09082 -12.01337 -11.91200 -11.86038 -11.72995 -11.64204 -11.55837 -11.43630 -11.28292 -10.97070 -10.74234 -10.70274 -10.11376 -9.17903 -8.25843 -6.31869 1.41390 1.44572 1.54924 1.62672 2.04679 2.11527 2.16203 2.40065 2.93066 3.10695 3.31022 3.60500 3.72131 3.77868 3.83926 3.90432 3.93423 4.08644 4.25869 4.28138 4.29640 4.40653 4.46973 4.49764 4.62263 4.66964 4.68207 4.70356 4.72235 4.81697 4.82337 4.90694 4.92048 4.94319 4.94471 4.97724 5.01008 5.04926 5.14092 5.19341 5.21173 5.22893 5.30975 5.32473 5.34546 5.42009 5.42693 5.54369 5.62337 6.11013 6.23280 6.26379 6.53145 6.75565 6.88968 7.23951 7.32657 8.91239 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.002432 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.323448 B =11510.172698 C =12534.687209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.140 4.140 5 C 0.513 3.487 6 O -0.590 6.590 7 N -0.712 5.712 8 C 0.128 3.872 9 C -0.083 4.083 10 H 0.075 0.925 11 C -0.108 4.108 12 C -0.111 4.111 13 C 0.053 3.947 14 N -0.552 5.552 15 C 0.070 3.930 16 C 0.018 3.982 17 H 0.110 0.890 18 C 0.263 3.737 19 N -0.510 5.510 20 C -0.003 4.003 21 C -0.532 4.532 22 H 0.026 0.974 23 C 0.002 3.998 24 N -0.955 5.955 25 Si 0.950 3.050 26 H -0.258 1.258 27 H -0.295 1.295 28 H -0.235 1.235 29 C 0.052 3.948 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.413 0.587 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.044 0.956 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.089 0.911 50 H 0.029 0.971 51 H 0.061 0.939 52 H 0.265 0.735 53 H 0.062 0.938 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 30.022 -10.706 32.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.197 4.197 5 C 0.301 3.699 6 O -0.470 6.470 7 N -0.365 5.365 8 C 0.003 3.997 9 C -0.102 4.102 10 H 0.094 0.906 11 C -0.145 4.145 12 C -0.149 4.149 13 C -0.074 4.074 14 N -0.276 5.276 15 C -0.058 4.058 16 C -0.003 4.003 17 H 0.128 0.872 18 C -0.054 4.054 19 N -0.187 5.187 20 C -0.042 4.042 21 C -0.570 4.570 22 H 0.044 0.956 23 C -0.195 4.195 24 N -0.595 5.595 25 Si 0.773 3.227 26 H -0.182 1.182 27 H -0.222 1.222 28 H -0.158 1.158 29 C -0.076 4.076 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.251 0.749 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.107 0.893 50 H 0.048 0.952 51 H 0.079 0.921 52 H 0.074 0.926 53 H 0.080 0.920 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.228 28.721 -12.038 31.308 hybrid contribution -0.095 -0.801 1.537 1.736 sum -3.323 27.920 -10.501 30.014 Atomic orbital electron populations 1.21675 0.92514 1.01821 1.02564 1.20872 0.97716 0.97638 0.92452 1.21873 1.02065 0.91877 1.03532 1.21897 1.01957 0.99874 0.95997 1.21296 0.82121 0.78812 0.87707 1.90690 1.56640 1.50617 1.49045 1.45898 1.06969 1.58153 1.25433 1.21233 0.93929 0.96482 0.88043 1.21261 0.92063 0.97542 0.99382 0.90635 1.21617 0.95880 0.94205 1.02846 1.21555 0.95252 0.99802 0.98270 1.22182 1.00402 0.86774 0.98076 1.61905 1.07720 1.09949 1.48075 1.22148 1.00331 0.88749 0.94594 1.19188 1.02476 0.94646 0.84035 0.87221 1.29213 0.91493 0.90681 0.93982 1.80895 1.11167 1.11801 1.14871 1.19584 0.96763 0.92876 0.94937 1.21386 1.22204 0.98696 1.14671 0.95557 1.26073 0.98535 0.94404 1.00489 1.70097 1.44710 1.06044 1.38674 0.85666 0.79723 0.78138 0.79215 1.18202 1.22151 1.15810 1.22112 0.87851 1.00002 0.97636 0.93290 0.89457 0.93917 0.90687 0.89332 0.92819 0.93633 0.89129 0.90948 0.74939 0.93656 0.91715 0.91543 0.90269 0.89414 0.91970 0.93740 0.90161 0.90501 0.89300 0.95216 0.92062 0.92648 0.91991 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 7.76 71.98 0.56 -1.44 16 2 C -0.08 -1.16 0.87 -52.93 -0.05 -1.21 16 3 C -0.14 -1.12 8.37 71.98 0.60 -0.52 16 4 C -0.14 -1.49 8.37 71.98 0.60 -0.89 16 5 C 0.51 11.08 6.48 87.66 0.57 11.64 16 6 O -0.59 -18.77 15.98 -3.02 -0.05 -18.82 16 7 N -0.71 -12.12 5.09 -463.06 -2.36 -14.48 16 8 C 0.13 2.60 5.07 86.38 0.44 3.04 16 9 C -0.08 -1.48 2.39 -10.74 -0.03 -1.50 16 10 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 11 C -0.11 -1.34 5.13 30.67 0.16 -1.18 16 12 C -0.11 -1.41 6.09 30.65 0.19 -1.22 16 13 C 0.05 0.84 5.46 86.33 0.47 1.31 16 14 N -0.55 -12.18 4.38 -896.36 -3.92 -16.10 16 15 C 0.07 1.71 4.52 86.30 0.39 2.10 16 16 C 0.02 0.62 1.75 -12.60 -0.02 0.60 16 17 H 0.11 3.69 6.08 -2.39 -0.01 3.67 16 18 C 0.26 10.78 13.43 89.47 1.20 11.98 16 19 N -0.51 -23.27 18.52 19.98 0.37 -22.90 16 20 C 0.00 -0.11 3.49 29.85 0.10 0.00 16 21 C -0.53 -29.10 9.15 25.60 0.23 -28.86 16 22 H 0.03 1.63 7.84 -2.91 -0.02 1.61 16 23 C 0.00 0.09 5.47 84.65 0.46 0.55 16 24 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 25 Si 0.95 41.73 27.47 68.60 1.88 43.62 16 26 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 27 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 28 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 29 C 0.05 1.14 4.31 86.33 0.37 1.51 16 30 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 0.83 8.10 -2.39 -0.02 0.81 16 33 H 0.07 0.40 7.57 -2.39 -0.02 0.38 16 34 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 0.60 7.56 -2.39 -0.02 0.58 16 39 H 0.41 4.52 6.51 -92.71 -0.60 3.92 16 40 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.70 7.26 -2.39 -0.02 0.69 16 44 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 46 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 47 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 48 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.03 1.20 7.20 -2.39 -0.02 1.19 16 51 H 0.06 2.20 7.57 -2.39 -0.02 2.18 16 52 H 0.26 15.54 8.31 -92.71 -0.77 14.76 16 53 H 0.06 1.66 5.70 -2.39 -0.01 1.64 16 54 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -77.80 422.31 2.68 -75.12 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.20 Total: 17.20 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 6.26 Total: -4.10 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -5.61 Total: -113.02 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.05 Total: -18.82 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.88 Total: 43.62 kcal Total: -77.80 2.68 -75.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247072890.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.342 kcal (2) G-P(sol) polarization free energy of solvation -77.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds