Wall clock time and date at job start Tue Mar 31 2020 18:44:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.36884 * 126.39700 * 2 1
4 4 C 1.34665 * 106.82009 * 180.02562 * 3 2 1
5 5 N 1.34135 * 108.02014 * 359.77458 * 4 3 2
6 6 C 1.30502 * 109.25255 * 0.37423 * 5 4 3
7 7 C 1.50700 * 125.64748 * 179.89099 * 6 5 4
8 8 H 1.09001 * 109.47236 * 164.69380 * 7 6 5
9 9 O 1.42899 * 109.47312 * 44.69292 * 7 6 5
10 10 C 1.53001 * 109.47070 * 284.68859 * 7 6 5
11 11 H 1.09003 * 109.50187 * 60.08176 * 10 7 6
12 12 C 1.53119 * 109.50430 * 300.00203 * 10 7 6
13 13 C 1.53120 * 109.15662 * 182.40287 * 12 10 7
14 14 C 1.53037 * 109.31068 * 57.63679 * 13 12 10
15 15 N 1.46849 * 109.52243 * 300.87818 * 14 13 12
16 16 C 1.46905 * 110.99596 * 185.80473 * 15 14 13
17 17 C 1.52994 * 109.47185 * 85.25750 * 16 15 14
18 18 C 1.53002 * 109.47133 * 294.32535 * 17 16 15
19 19 C 1.52999 * 109.47327 * 54.32482 * 17 16 15
20 20 C 1.53003 * 109.46998 * 174.32757 * 17 16 15
21 21 C 1.50702 * 109.47192 * 179.97438 * 20 17 16
22 22 H 1.08003 * 119.99810 * 359.97438 * 21 20 17
23 23 C 1.37875 * 119.99875 * 179.97438 * 21 20 17
24 24 N 1.31517 * 119.99668 * 180.02562 * 23 21 20
25 25 Si 1.86803 * 120.00194 * 0.02562 * 23 21 20
26 26 H 1.48500 * 109.46848 * 90.00009 * 25 23 21
27 27 H 1.48492 * 109.47190 * 210.00016 * 25 23 21
28 28 H 1.48495 * 109.47060 * 330.00347 * 25 23 21
29 29 C 1.46843 * 111.23388 * 61.68232 * 15 14 13
30 30 H 1.09000 * 109.47412 * 269.97764 * 1 2 3
31 31 H 1.09002 * 109.46798 * 29.98165 * 1 2 3
32 32 H 1.09005 * 109.46474 * 149.97660 * 1 2 3
33 33 H 1.08001 * 126.59116 * 0.05181 * 3 2 1
34 34 H 1.08000 * 125.99292 * 180.02562 * 4 3 2
35 35 H 0.96705 * 113.99664 * 300.00013 * 9 7 6
36 36 H 1.08995 * 109.52078 * 62.49928 * 12 10 7
37 37 H 1.08998 * 109.52070 * 302.30863 * 12 10 7
38 38 H 1.08998 * 109.50212 * 177.59654 * 13 12 10
39 39 H 1.09000 * 109.50599 * 297.67280 * 13 12 10
40 40 H 1.08998 * 109.46579 * 60.85620 * 14 13 12
41 41 H 1.09002 * 109.45947 * 180.82435 * 14 13 12
42 42 H 1.08998 * 109.46785 * 205.25774 * 16 15 14
43 43 H 1.09007 * 109.46899 * 325.25640 * 16 15 14
44 44 H 1.09005 * 109.46969 * 75.17780 * 18 17 16
45 45 H 1.09000 * 109.47182 * 195.17529 * 18 17 16
46 46 H 1.08998 * 109.47198 * 315.17241 * 18 17 16
47 47 H 1.09000 * 109.46941 * 60.00400 * 19 17 16
48 48 H 1.09008 * 109.47143 * 179.97438 * 19 17 16
49 49 H 1.08990 * 109.47510 * 300.00013 * 19 17 16
50 50 H 1.09000 * 109.46868 * 299.99806 * 20 17 16
51 51 H 1.08998 * 109.47384 * 59.99941 * 20 17 16
52 52 H 0.97004 * 119.99683 * 179.97438 * 24 23 21
53 53 H 1.08994 * 109.46795 * 178.26216 * 29 15 14
54 54 H 1.08996 * 109.46271 * 58.29195 * 29 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2772 1.1018 0.0000
4 6 3.5461 0.6506 -0.0006
5 7 3.5096 -0.6903 0.0041
6 6 2.2664 -1.0870 -0.0005
7 6 1.8019 -2.5206 0.0001
8 1 0.7458 -2.5603 0.2670
9 8 2.5621 -3.2672 0.9522
10 6 1.9986 -3.1210 -1.3934
11 1 3.0548 -3.0829 -1.6602
12 6 1.1843 -2.3215 -2.4142
13 6 1.3390 -2.9647 -3.7951
14 6 0.8827 -4.4239 -3.7277
15 7 1.6918 -5.1458 -2.7374
16 6 1.3751 -6.5803 -2.7438
17 6 2.2021 -7.2804 -3.8239
18 6 1.7688 -6.7789 -5.2030
19 6 3.6853 -6.9707 -3.6115
20 6 1.9791 -8.7916 -3.7375
21 6 2.7932 -9.4812 -4.8019
22 1 3.4078 -8.8996 -5.4731
23 6 2.7533 -10.8544 -4.9187
24 7 3.4642 -11.4562 -5.8473
25 14 1.6897 -11.8601 -3.7582
26 1 0.3338 -12.0195 -4.3425
27 1 2.3030 -13.1976 -3.5585
28 1 1.5867 -11.1625 -2.4514
29 6 1.5227 -4.5755 -1.3948
30 1 -0.3634 -0.0004 1.0276
31 1 -0.3633 0.8902 -0.5136
32 1 -0.3632 -0.8898 -0.5142
33 1 1.9613 2.1346 0.0008
34 1 4.4369 1.2612 -0.0003
35 1 3.5131 -3.2754 0.7768
36 1 1.5491 -1.2949 -2.4475
37 1 0.1332 -2.3263 -2.1257
38 1 0.7275 -2.4253 -4.5183
39 1 2.3846 -2.9241 -4.1004
40 1 -0.1669 -4.4632 -3.4364
41 1 1.0056 -4.8884 -4.7061
42 1 1.6119 -7.0090 -1.7700
43 1 0.3140 -6.7172 -2.9527
44 1 2.1673 -5.7777 -5.3672
45 1 2.1502 -7.4522 -5.9707
46 1 0.6804 -6.7497 -5.2535
47 1 3.9939 -7.3280 -2.6291
48 1 4.2745 -7.4699 -4.3808
49 1 3.8441 -5.8942 -3.6730
50 1 2.2877 -9.1488 -2.7551
51 1 0.9225 -9.0122 -3.8889
52 1 3.4365 -12.4223 -5.9293
53 1 2.1102 -5.1506 -0.6792
54 1 0.4702 -4.6134 -1.1141
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000305743700.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:44:50
Heat of formation + Delta-G solvation = -15.176275 kcal
Electronic energy + Delta-G solvation = -30627.431857 eV
Core-core repulsion = 26791.986220 eV
Total energy + Delta-G solvation = -3835.445638 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.46 seconds
Orbital eigenvalues (eV)
-43.11648 -40.62212 -38.70749 -37.22220 -35.01054 -34.68222 -33.61051 -32.37556
-30.66079 -29.57549 -28.15257 -27.90234 -27.46477 -26.45196 -24.85245 -23.40753
-23.03382 -22.26247 -20.87673 -20.69422 -19.47253 -18.84177 -18.46295 -17.43110
-16.77200 -16.53707 -16.41113 -16.17199 -15.96615 -15.63162 -15.36824 -15.06062
-14.91184 -14.61880 -14.39044 -14.29287 -14.16011 -13.97271 -13.82466 -13.74943
-13.64054 -13.48170 -13.23252 -13.04497 -12.76882 -12.64030 -12.31474 -12.21106
-12.02339 -12.00097 -11.78027 -11.65768 -11.57510 -11.40986 -11.26147 -11.12132
-10.94466 -10.86601 -10.67879 -10.59754 -10.52632 -9.33477 -9.06080 -8.19740
-6.19509 1.06709 1.36279 1.38819 1.49908 1.88057 2.14264 2.41145
2.94065 3.15227 3.28041 3.48340 3.72137 3.79359 3.88974 3.96240
4.03080 4.12146 4.23543 4.28560 4.37038 4.39662 4.42190 4.46372
4.47934 4.60345 4.63403 4.69832 4.72852 4.76285 4.78507 4.82285
4.90930 4.97469 5.00429 5.03853 5.10468 5.14506 5.17594 5.24814
5.28802 5.34583 5.43270 5.46555 5.49625 5.59447 5.67864 5.80452
5.84926 5.87349 6.20556 6.25206 6.35524 6.45891 6.58172 6.87670
7.13994 7.42497 8.96584
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.023990 B = 0.002430 C = 0.002387
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1166.895389 B =11518.626686 C =11727.227147
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.057 3.943
2 N -0.451 5.451
3 C -0.045 4.045
4 C -0.061 4.061
5 N -0.520 5.520
6 C 0.166 3.834
7 C 0.208 3.792
8 H 0.121 0.879
9 O -0.557 6.557
10 C -0.094 4.094
11 H 0.069 0.931
12 C -0.101 4.101
13 C -0.109 4.109
14 C 0.037 3.963
15 N -0.537 5.537
16 C 0.076 3.924
17 C -0.041 4.041
18 C -0.125 4.125
19 C -0.103 4.103
20 C -0.004 4.004
21 C -0.500 4.500
22 H 0.043 0.957
23 C -0.001 4.001
24 N -0.956 5.956
25 Si 0.941 3.059
26 H -0.270 1.270
27 H -0.290 1.290
28 H -0.249 1.249
29 C 0.071 3.929
30 H 0.089 0.911
31 H 0.111 0.889
32 H 0.095 0.905
33 H 0.209 0.791
34 H 0.179 0.821
35 H 0.391 0.609
36 H 0.056 0.944
37 H 0.075 0.925
38 H 0.081 0.919
39 H 0.055 0.945
40 H 0.035 0.965
41 H 0.086 0.914
42 H 0.064 0.936
43 H 0.038 0.962
44 H 0.064 0.936
45 H 0.033 0.967
46 H 0.049 0.951
47 H 0.034 0.966
48 H 0.023 0.977
49 H 0.064 0.936
50 H 0.012 0.988
51 H 0.012 0.988
52 H 0.262 0.738
53 H 0.071 0.929
54 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.047 29.207 13.290 33.936
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 N -0.134 5.134
3 C -0.179 4.179
4 C -0.208 4.208
5 N -0.240 5.240
6 C -0.097 4.097
7 C 0.146 3.854
8 H 0.139 0.861
9 O -0.363 6.363
10 C -0.114 4.114
11 H 0.087 0.913
12 C -0.139 4.139
13 C -0.147 4.147
14 C -0.091 4.091
15 N -0.261 5.261
16 C -0.052 4.052
17 C -0.042 4.042
18 C -0.182 4.182
19 C -0.161 4.161
20 C -0.041 4.041
21 C -0.538 4.538
22 H 0.061 0.939
23 C -0.196 4.196
24 N -0.598 5.598
25 Si 0.766 3.234
26 H -0.195 1.195
27 H -0.216 1.216
28 H -0.173 1.173
29 C -0.057 4.057
30 H 0.108 0.892
31 H 0.130 0.870
32 H 0.114 0.886
33 H 0.225 0.775
34 H 0.197 0.803
35 H 0.241 0.759
36 H 0.075 0.925
37 H 0.094 0.906
38 H 0.099 0.901
39 H 0.074 0.926
40 H 0.053 0.947
41 H 0.104 0.896
42 H 0.082 0.918
43 H 0.057 0.943
44 H 0.083 0.917
45 H 0.052 0.948
46 H 0.068 0.932
47 H 0.053 0.947
48 H 0.043 0.957
49 H 0.082 0.918
50 H 0.030 0.970
51 H 0.030 0.970
52 H 0.070 0.930
53 H 0.090 0.910
54 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -10.602 28.481 13.383 33.207
hybrid contribution -0.718 -0.462 -0.011 0.854
sum -11.320 28.018 13.372 33.045
Atomic orbital electron populations
1.22454 0.74437 1.06473 1.05067 1.45476 1.08908 1.05845 1.53212
1.23250 0.90708 0.93823 1.10085 1.22686 0.98134 0.90730 1.09263
1.70044 1.19816 1.13618 1.20568 1.24076 0.86439 0.92395 1.06813
1.20152 0.96013 0.80447 0.88796 0.86116 1.86504 1.24615 1.72778
1.52396 1.21687 1.01359 0.94481 0.93896 0.91273 1.21484 0.99867
0.98064 0.94457 1.21505 1.01721 0.94345 0.97111 1.22581 0.94359
0.94725 0.97408 1.61705 1.56458 1.01922 1.05981 1.22073 0.96987
0.87518 0.98648 1.20277 0.95594 0.93571 0.94726 1.21911 0.99725
0.99830 0.96699 1.21455 0.95142 1.00233 0.99255 1.19604 0.95423
0.93699 0.95412 1.21421 1.25574 0.91626 1.15202 0.93868 1.25937
0.97121 0.99511 0.97079 1.70074 1.43887 1.09744 1.36078 0.85789
0.79082 0.77783 0.80756 1.19501 1.21574 1.17292 1.21989 0.99216
0.94434 0.90075 0.89210 0.87039 0.88642 0.77475 0.80339 0.75915
0.92490 0.90606 0.90074 0.92641 0.94665 0.89592 0.91784 0.94341
0.91724 0.94773 0.93195 0.94722 0.95742 0.91758 0.96996 0.96993
0.92957 0.91040 0.94368
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.27 10.75 127.77 1.37 1.64 16
2 N -0.45 -5.97 3.15 -537.60 -1.69 -7.66 16
3 C -0.04 -0.58 11.58 83.09 0.96 0.38 16
4 C -0.06 -1.12 11.87 83.52 0.99 -0.13 16
5 N -0.52 -12.21 11.13 -188.13 -2.09 -14.31 16
6 C 0.17 3.14 5.56 138.13 0.77 3.91 16
7 C 0.21 3.64 2.83 29.85 0.08 3.73 16
8 H 0.12 1.65 7.08 -2.39 -0.02 1.64 16
9 O -0.56 -11.84 12.68 -148.98 -1.89 -13.73 16
10 C -0.09 -1.78 2.11 -10.74 -0.02 -1.80 16
11 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
12 C -0.10 -1.60 4.83 30.67 0.15 -1.45 16
13 C -0.11 -2.03 6.09 30.65 0.19 -1.84 16
14 C 0.04 0.82 4.96 86.33 0.43 1.25 16
15 N -0.54 -13.81 3.50 -896.37 -3.14 -16.95 16
16 C 0.08 2.32 4.22 86.30 0.36 2.69 16
17 C -0.04 -1.57 0.61 -52.18 -0.03 -1.60 16
18 C -0.12 -4.59 6.88 71.98 0.50 -4.09 16
19 C -0.10 -4.08 7.94 71.98 0.57 -3.51 16
20 C 0.00 -0.16 3.11 29.85 0.09 -0.07 16
21 C -0.50 -28.49 7.99 25.60 0.20 -28.28 16
22 H 0.04 2.71 6.04 -2.91 -0.02 2.69 16
23 C 0.00 -0.06 5.47 84.65 0.46 0.40 16
24 N -0.96 -60.87 13.96 21.45 0.30 -60.57 16
25 Si 0.94 45.23 27.47 68.60 1.88 47.11 16
26 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16
27 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16
28 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16
29 C 0.07 1.54 4.50 86.33 0.39 1.93 16
30 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16
31 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16
32 H 0.09 0.33 6.50 -2.38 -0.02 0.31 16
33 H 0.21 1.03 8.06 -2.91 -0.02 1.01 16
34 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16
35 H 0.39 7.74 8.93 -74.05 -0.66 7.08 16
36 H 0.06 0.96 7.32 -2.39 -0.02 0.94 16
37 H 0.08 0.90 7.48 -2.39 -0.02 0.89 16
38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16
39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16
40 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16
41 H 0.09 2.14 3.99 -2.39 -0.01 2.13 16
42 H 0.06 1.98 7.64 -2.39 -0.02 1.96 16
43 H 0.04 1.14 7.77 -2.38 -0.02 1.12 16
44 H 0.06 2.11 6.29 -2.38 -0.02 2.09 16
45 H 0.03 1.49 6.27 -2.39 -0.01 1.48 16
46 H 0.05 1.65 7.59 -2.39 -0.02 1.64 16
47 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16
48 H 0.02 1.09 6.62 -2.38 -0.02 1.07 16
49 H 0.06 2.29 7.46 -2.39 -0.02 2.27 16
50 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16
51 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16
52 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16
53 H 0.07 1.73 7.48 -2.39 -0.02 1.71 16
54 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16
Total: -1.00 -73.67 402.73 1.00 -72.67
By element:
Atomic # 1 Polarization: 20.13 SS G_CDS: 0.16 Total: 20.29 kcal
Atomic # 6 Polarization: -34.33 SS G_CDS: 7.47 Total: -26.86 kcal
Atomic # 7 Polarization: -92.86 SS G_CDS: -6.63 Total: -99.49 kcal
Atomic # 8 Polarization: -11.84 SS G_CDS: -1.89 Total: -13.73 kcal
Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.11 kcal
Total: -73.67 1.00 -72.67 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000305743700.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.496 kcal
(2) G-P(sol) polarization free energy of solvation -73.674 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.178 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.672 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.176 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.46 seconds