Wall clock time and date at job start Tue Mar 31 2020 19:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47292 * 2 1 4 4 H 1.08992 * 109.41357 * 296.15759 * 3 2 1 5 5 C 1.53821 * 109.41393 * 56.01723 * 3 2 1 6 6 N 1.45655 * 107.81781 * 171.26283 * 5 3 2 7 7 C 1.46409 * 116.80140 * 173.97981 * 6 5 3 8 8 C 1.54751 * 106.03130 * 151.62318 * 7 6 5 9 9 C 1.55285 * 105.00104 * 356.48116 * 8 7 6 10 10 C 1.48719 * 109.83939 * 294.03066 * 6 5 3 11 11 H 1.09001 * 111.95763 * 308.73076 * 10 6 5 12 12 C 1.52662 * 107.13040 * 70.75374 * 10 6 5 13 13 N 1.47052 * 109.37727 * 176.40893 * 3 2 1 14 14 C 1.34774 * 120.35095 * 12.84734 * 13 3 2 15 15 O 1.21590 * 120.00073 * 5.59679 * 14 13 3 16 16 N 1.34781 * 119.99976 * 185.59255 * 14 13 3 17 17 C 1.46503 * 119.99896 * 175.09530 * 16 14 13 18 18 H 1.08994 * 110.01468 * 325.06110 * 17 16 14 19 19 C 1.53871 * 110.03228 * 86.45400 * 17 16 14 20 20 C 1.54265 * 106.59564 * 119.28326 * 19 17 16 21 21 C 1.54892 * 104.19705 * 23.61147 * 20 19 17 22 22 H 1.09002 * 110.75534 * 80.37477 * 21 20 19 23 23 C 1.50699 * 110.75708 * 203.55808 * 21 20 19 24 24 H 1.07998 * 120.00292 * 118.54139 * 23 21 20 25 25 C 1.37882 * 119.99884 * 298.54871 * 23 21 20 26 26 N 1.31512 * 119.99826 * 359.97438 * 25 23 21 27 27 Si 1.86803 * 119.99943 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47028 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47376 * 119.99450 * 27 25 23 30 30 H 1.48505 * 109.46760 * 239.99629 * 27 25 23 31 31 C 1.54270 * 110.02875 * 203.62346 * 17 16 14 32 32 H 1.08997 * 109.47099 * 184.46307 * 1 2 3 33 33 H 1.08990 * 109.47051 * 304.46956 * 1 2 3 34 34 H 1.09007 * 109.46436 * 64.47010 * 1 2 3 35 35 H 1.09002 * 109.46880 * 239.99556 * 2 1 3 36 36 H 1.09007 * 109.46707 * 120.00224 * 2 1 3 37 37 H 1.09006 * 109.79000 * 51.68527 * 5 3 2 38 38 H 1.09005 * 109.78737 * 290.84760 * 5 3 2 39 39 H 1.08997 * 110.14530 * 32.47994 * 7 6 5 40 40 H 1.09008 * 110.13986 * 270.76005 * 7 6 5 41 41 H 1.08998 * 110.33506 * 237.59737 * 8 7 6 42 42 H 1.09002 * 110.42574 * 115.40813 * 8 7 6 43 43 H 1.08994 * 110.86405 * 219.63466 * 9 8 7 44 44 H 1.09000 * 110.86587 * 95.96431 * 9 8 7 45 45 H 1.09000 * 110.00534 * 61.42729 * 12 10 6 46 46 H 1.08998 * 110.00609 * 182.74606 * 12 10 6 47 47 H 0.97002 * 119.99732 * 355.09747 * 16 14 13 48 48 H 1.08990 * 110.03587 * 238.56673 * 19 17 16 49 49 H 1.08998 * 110.03531 * 359.95337 * 19 17 16 50 50 H 1.09003 * 110.48637 * 142.29033 * 20 19 17 51 51 H 1.09005 * 110.49008 * 264.79907 * 20 19 17 52 52 H 0.96999 * 119.99679 * 180.02562 * 26 25 23 53 53 H 1.08998 * 110.48742 * 335.78257 * 31 17 16 54 54 H 1.09001 * 110.48690 * 98.43002 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7336 1.9351 -0.9227 5 6 1.4460 2.1948 1.2030 6 7 2.1096 3.4884 1.2915 7 6 1.5971 4.4261 2.2924 8 6 2.7968 5.3150 2.6990 9 6 4.0086 4.7358 1.9196 10 6 3.5463 3.2970 1.6247 11 1 3.6807 2.6543 2.4947 12 6 4.2182 2.6993 0.3911 13 7 3.5080 1.4409 0.0869 14 6 4.2005 0.3011 -0.1074 15 8 3.6219 -0.7100 -0.4557 16 7 5.5345 0.2821 0.0843 17 6 6.2718 -0.9794 -0.0219 18 1 5.6604 -1.8013 0.3505 19 6 6.6666 -1.2376 -1.4865 20 6 8.2076 -1.2981 -1.5233 21 6 8.6075 -1.6810 -0.0768 22 1 8.4987 -2.7538 0.0829 23 6 10.0167 -1.2389 0.2226 24 1 10.2028 -0.5260 1.0123 25 6 11.0685 -1.7444 -0.5117 26 7 10.8420 -2.6128 -1.4730 27 14 12.8155 -1.1970 -0.1402 28 1 12.8010 -0.2217 0.9797 29 1 13.6335 -2.3764 0.2406 30 1 13.4006 -0.5570 -1.3458 31 6 7.5867 -0.8920 0.7802 32 1 -0.3633 -1.0245 0.0800 33 1 -0.3633 0.5816 0.8472 34 1 -0.3632 0.4430 -0.9274 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.6213 1.6268 2.1167 38 1 0.3754 2.3383 1.0564 39 1 1.2223 3.8821 3.1593 40 1 0.8050 5.0388 1.8618 41 1 2.9705 5.2488 3.7730 42 1 2.6190 6.3503 2.4079 43 1 4.9050 4.7363 2.5396 44 1 4.1748 5.2876 0.9944 45 1 4.1340 3.3877 -0.4498 46 1 5.2678 2.4938 0.6009 47 1 6.0063 1.1037 0.2925 48 1 6.2476 -2.1852 -1.8247 49 1 6.3089 -0.4248 -2.1185 50 1 8.5428 -2.0607 -2.2264 51 1 8.6214 -0.3257 -1.7909 52 1 11.5820 -2.9687 -1.9894 53 1 7.9001 0.1465 0.8870 54 1 7.4687 -1.3583 1.7584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332200923.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:11 Heat of formation + Delta-G solvation = -27.381747 kcal Electronic energy + Delta-G solvation = -30746.962732 eV Core-core repulsion = 26910.987825 eV Total energy + Delta-G solvation = -3835.974907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.95490 -40.26805 -38.89800 -36.81556 -35.82250 -34.77456 -33.36589 -32.64936 -30.88314 -29.94747 -28.90935 -28.03433 -25.95134 -25.65586 -24.90088 -22.55898 -21.87679 -21.68911 -21.28554 -20.95062 -20.43260 -18.57318 -18.43256 -17.41973 -17.16779 -16.90943 -16.57425 -16.30184 -16.08608 -15.82266 -15.26795 -15.18372 -14.84045 -14.80105 -14.47669 -14.21189 -13.94612 -13.80627 -13.61951 -13.45459 -13.23686 -13.02152 -12.99061 -12.79409 -12.54340 -12.46071 -12.34821 -12.24316 -12.10238 -12.00988 -11.92211 -11.81302 -11.64468 -11.62865 -11.46272 -11.35914 -11.06519 -10.78578 -10.45052 -10.20298 -10.05008 -9.63535 -9.24616 -8.08193 -6.18619 1.42976 1.45108 1.55834 1.61425 2.17316 2.46136 2.88141 2.91316 3.22717 3.56866 3.70358 3.80539 3.93157 4.02060 4.06425 4.14074 4.15846 4.18194 4.22454 4.25512 4.38906 4.45633 4.56265 4.57900 4.65058 4.70225 4.72958 4.79052 4.81100 4.88125 4.91242 4.95956 5.03204 5.04635 5.06641 5.09515 5.16680 5.23207 5.23939 5.31331 5.32883 5.36827 5.37907 5.43357 5.68344 5.71083 5.78541 5.87053 5.95352 5.99176 6.01746 6.20823 6.39005 6.91960 7.01696 7.49148 7.64838 9.00449 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.002790 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.937911 B =10033.462236 C =11541.021666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.173 3.827 4 H 0.074 0.926 5 C 0.059 3.941 6 N -0.540 5.540 7 C 0.047 3.953 8 C -0.123 4.123 9 C -0.110 4.110 10 C 0.052 3.948 11 H 0.048 0.952 12 C 0.124 3.876 13 N -0.630 5.630 14 C 0.699 3.301 15 O -0.616 6.616 16 N -0.728 5.728 17 C 0.173 3.827 18 H 0.067 0.933 19 C -0.121 4.121 20 C -0.089 4.089 21 C 0.041 3.959 22 H 0.000 1.000 23 C -0.526 4.526 24 H 0.060 0.940 25 C 0.010 3.990 26 N -0.921 5.921 27 Si 0.954 3.046 28 H -0.262 1.262 29 H -0.285 1.285 30 H -0.283 1.283 31 C -0.105 4.105 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.104 0.896 39 H 0.037 0.963 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.402 0.598 48 H 0.048 0.952 49 H 0.057 0.943 50 H 0.037 0.963 51 H 0.037 0.963 52 H 0.259 0.741 53 H 0.073 0.927 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.225 17.739 7.539 27.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C 0.070 3.930 4 H 0.092 0.908 5 C -0.070 4.070 6 N -0.265 5.265 7 C -0.081 4.081 8 C -0.161 4.161 9 C -0.149 4.149 10 C -0.057 4.057 11 H 0.066 0.934 12 C 0.001 3.999 13 N -0.367 5.367 14 C 0.401 3.599 15 O -0.497 6.497 16 N -0.385 5.385 17 C 0.067 3.933 18 H 0.085 0.915 19 C -0.160 4.160 20 C -0.127 4.127 21 C 0.022 3.978 22 H 0.018 0.982 23 C -0.564 4.564 24 H 0.078 0.922 25 C -0.189 4.189 26 N -0.560 5.560 27 Si 0.780 3.220 28 H -0.186 1.186 29 H -0.211 1.211 30 H -0.209 1.209 31 C -0.143 4.143 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.122 0.878 39 H 0.055 0.945 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.241 0.759 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.056 0.944 51 H 0.056 0.944 52 H 0.068 0.932 53 H 0.091 0.909 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.670 17.127 6.710 27.670 hybrid contribution 1.419 -0.498 0.682 1.651 sum -19.251 16.629 7.393 26.491 Atomic orbital electron populations 1.21906 0.94529 1.02011 1.02372 1.21955 0.95564 0.94382 1.03239 1.21259 0.77081 0.96437 0.98272 0.90762 1.22406 0.99725 0.88656 0.96208 1.62967 1.02588 1.12228 1.48690 1.22612 0.98425 0.94212 0.92807 1.22606 0.93343 0.99985 1.00215 1.22379 0.98266 0.92741 1.01510 1.22965 0.89383 0.97743 0.95632 0.93355 1.21887 0.95764 0.84494 0.97723 1.47601 1.06827 1.07373 1.74872 1.16188 0.81894 0.83675 0.78163 1.90876 1.68311 1.35100 1.55458 1.45566 1.05754 1.11525 1.75680 1.21291 0.91871 0.85020 0.95102 0.91494 1.22503 0.96712 1.00298 0.96517 1.22073 0.92007 0.99013 0.99618 1.19524 0.92886 0.93686 0.91679 0.98232 1.21499 0.92266 1.25350 1.17330 0.92219 1.25789 1.02958 0.95101 0.95033 1.70115 1.32353 1.31259 1.22273 0.85565 0.80152 0.78112 0.78164 1.18633 1.21089 1.20900 1.22542 0.92737 1.01189 0.97816 0.92784 0.91654 0.91892 0.90470 0.94348 0.95509 0.87809 0.94452 0.89464 0.90889 0.89616 0.89712 0.89736 0.89552 0.89229 0.75934 0.93338 0.92447 0.94432 0.94407 0.93244 0.90877 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.61 71.98 0.69 -2.04 16 2 C -0.11 -2.87 3.96 30.59 0.12 -2.75 16 3 C 0.17 3.85 3.21 45.16 0.15 4.00 16 4 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 5 C 0.06 1.04 4.44 86.82 0.39 1.43 16 6 N -0.54 -8.63 4.65 -864.31 -4.02 -12.65 16 7 C 0.05 0.57 6.84 86.99 0.60 1.16 16 8 C -0.12 -1.20 6.98 31.98 0.22 -0.98 16 9 C -0.11 -1.24 6.60 31.71 0.21 -1.04 16 10 C 0.05 0.83 2.82 44.78 0.13 0.95 16 11 H 0.05 0.92 8.07 -2.39 -0.02 0.90 16 12 C 0.12 2.27 6.08 86.05 0.52 2.80 16 13 N -0.63 -15.52 3.04 -810.56 -2.46 -17.98 16 14 C 0.70 22.18 8.04 179.05 1.44 23.62 16 15 O -0.62 -23.66 11.80 -4.00 -0.05 -23.71 16 16 N -0.73 -22.16 4.90 -454.34 -2.23 -24.39 16 17 C 0.17 6.34 3.19 45.72 0.15 6.48 16 18 H 0.07 2.63 7.68 -2.39 -0.02 2.62 16 19 C -0.12 -4.90 6.59 31.32 0.21 -4.70 16 20 C -0.09 -4.23 5.57 31.67 0.18 -4.05 16 21 C 0.04 2.03 2.81 -10.25 -0.03 2.00 16 22 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 23 C -0.53 -28.24 8.55 25.60 0.22 -28.02 16 24 H 0.06 3.08 7.78 -2.91 -0.02 3.06 16 25 C 0.01 0.54 5.33 84.66 0.45 0.99 16 26 N -0.92 -53.67 12.02 21.45 0.26 -53.41 16 27 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 28 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 29 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 30 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 31 C -0.10 -4.07 5.95 31.67 0.19 -3.88 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 0.96 6.31 -2.39 -0.02 0.94 16 34 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 35 H 0.08 2.48 5.95 -3.65 -0.02 2.46 16 36 H 0.04 1.14 7.51 -2.38 -0.02 1.13 16 37 H 0.03 0.54 8.04 -2.38 -0.02 0.52 16 38 H 0.10 1.48 6.84 -2.38 -0.02 1.46 16 39 H 0.04 0.47 8.03 -2.39 -0.02 0.45 16 40 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 42 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 45 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.09 1.50 5.62 -2.39 -0.01 1.48 16 47 H 0.40 10.21 5.79 -92.71 -0.54 9.67 16 48 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.06 2.21 7.92 -2.39 -0.02 2.19 16 50 H 0.04 1.99 7.37 -2.39 -0.02 1.97 16 51 H 0.04 1.82 8.05 -2.38 -0.02 1.80 16 52 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 53 H 0.07 2.64 7.63 -2.39 -0.02 2.62 16 54 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -65.26 398.38 -0.33 -65.59 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.32 Total: 25.51 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 5.82 Total: -4.02 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -8.45 Total: -108.43 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.05 Total: -23.71 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -65.26 -0.33 -65.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332200923.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.204 kcal (2) G-P(sol) polarization free energy of solvation -65.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds