Wall clock time and date at job start Tue Mar 31 2020 19:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47564 * 2 1 4 4 N 1.46894 * 109.47271 * 239.99347 * 2 1 3 5 5 C 1.46895 * 111.00059 * 85.00641 * 4 2 1 6 6 C 1.50694 * 109.47618 * 179.97438 * 5 4 2 7 7 O 1.21290 * 119.99969 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00287 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99832 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47420 * 270.00196 * 9 8 6 11 11 H 1.08004 * 119.99994 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00109 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99647 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99790 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47264 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46927 * 120.00039 * 14 12 10 17 17 H 1.48502 * 109.46793 * 239.99548 * 14 12 10 18 18 C 1.46499 * 119.99786 * 0.02562 * 8 6 5 19 19 C 1.53000 * 109.46840 * 269.99584 * 18 8 6 20 20 C 1.47201 * 109.46973 * 180.02562 * 19 18 8 21 21 N 6.96643 * 79.95433 * 307.95455 * 2 1 3 22 22 C 1.53006 * 109.46802 * 119.99538 * 2 1 3 23 23 H 1.08996 * 109.47238 * 179.97438 * 22 2 1 24 24 C 1.53008 * 109.46984 * 60.00145 * 22 2 1 25 25 C 1.52999 * 109.46927 * 180.02562 * 24 22 2 26 26 C 1.52998 * 109.47303 * 59.99856 * 25 24 22 27 27 C 1.52991 * 109.47069 * 299.99840 * 26 25 24 28 28 H 1.09004 * 109.47705 * 299.99860 * 27 26 25 29 29 C 1.53007 * 109.47135 * 180.02562 * 27 26 25 30 30 C 1.53000 * 109.47243 * 60.00378 * 27 26 25 31 31 H 1.08995 * 109.47588 * 300.00543 * 1 2 3 32 32 H 1.09007 * 109.46978 * 60.00216 * 1 2 3 33 33 H 1.08994 * 109.47564 * 179.97438 * 1 2 3 34 34 H 1.00901 * 111.00204 * 208.95439 * 4 2 1 35 35 H 1.09005 * 109.47270 * 59.99515 * 5 4 2 36 36 H 1.09000 * 109.46939 * 299.99870 * 5 4 2 37 37 H 1.08999 * 109.47380 * 30.00717 * 9 8 6 38 38 H 1.09001 * 109.46721 * 150.00109 * 9 8 6 39 39 H 0.97006 * 119.99665 * 180.02562 * 13 12 10 40 40 H 1.09001 * 109.46813 * 149.99858 * 18 8 6 41 41 H 1.08992 * 109.47397 * 29.99919 * 18 8 6 42 42 H 1.09002 * 109.47398 * 300.00326 * 19 18 8 43 43 H 1.09001 * 109.47194 * 60.00507 * 19 18 8 44 44 H 1.09003 * 109.46631 * 300.00080 * 24 22 2 45 45 H 1.08991 * 109.47002 * 59.99751 * 24 22 2 46 46 H 1.08997 * 109.46954 * 180.02562 * 25 24 22 47 47 H 1.08996 * 109.47045 * 299.99657 * 25 24 22 48 48 H 1.09003 * 109.47261 * 60.00328 * 26 25 24 49 49 H 1.09007 * 109.46764 * 180.02562 * 26 25 24 50 50 H 1.09000 * 109.47226 * 60.00056 * 29 27 26 51 51 H 1.09005 * 109.47127 * 180.02562 * 29 27 26 52 52 H 1.08996 * 109.47055 * 300.00008 * 29 27 26 53 53 H 1.09002 * 109.47018 * 180.02562 * 30 27 26 54 54 H 1.08996 * 109.47252 * 59.99805 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1993 5 6 2.0826 0.2224 -2.3468 6 6 2.5886 -0.5218 -3.5555 7 8 2.8697 -1.6985 -3.4695 8 7 2.7289 0.1203 -4.7323 9 6 3.2214 -0.6031 -5.9072 10 6 4.7243 -0.5066 -5.9631 11 1 5.2591 0.0387 -5.1995 12 6 5.4165 -1.1144 -6.9890 13 7 4.7652 -1.7788 -7.9185 14 14 7.2794 -0.9954 -7.0577 15 1 7.7675 -0.1991 -5.9032 16 1 7.8649 -2.3589 -7.0022 17 1 7.6867 -0.3329 -8.3229 18 6 2.3899 1.5417 -4.8360 19 6 0.9172 1.6877 -5.2241 20 6 0.5767 3.1160 -5.3290 21 7 0.3148 4.2189 -5.4088 22 6 2.0399 -0.7212 1.2494 23 1 3.1299 -0.7216 1.2492 24 6 1.5298 -2.1638 1.2494 25 6 2.0392 -2.8847 2.4991 26 6 1.5287 -2.1632 3.7479 27 6 2.0387 -0.7208 3.7478 28 1 3.1288 -0.7207 3.7484 29 6 1.5287 0.0006 4.9971 30 6 1.5293 0.0003 2.4983 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 2.9173 -1.1206 -1.0285 35 1 2.7590 1.0460 -2.1181 36 1 1.0872 0.6161 -2.5525 37 1 2.9269 -1.6503 -5.8390 38 1 2.7954 -0.1638 -6.8092 39 1 5.2522 -2.2067 -8.6400 40 1 3.0143 2.0095 -5.5973 41 1 2.5626 2.0275 -3.8758 42 1 0.7445 1.2019 -6.1844 43 1 0.2928 1.2200 -4.4628 44 1 0.4398 -2.1636 1.2493 45 1 1.8932 -2.6776 0.3595 46 1 1.6763 -3.9125 2.4989 47 1 3.1292 -2.8848 2.4995 48 1 0.4387 -2.1632 3.7475 49 1 1.8921 -2.6767 4.6382 50 1 1.8920 -0.5132 5.8871 51 1 1.8917 1.0284 4.9968 52 1 0.4387 0.0006 4.9970 53 1 1.8931 1.0278 2.4980 54 1 0.4393 0.0003 2.4978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452073650.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:11 Heat of formation + Delta-G solvation = -57.295694 kcal Electronic energy + Delta-G solvation = -29559.193029 eV Core-core repulsion = 25721.920956 eV Total energy + Delta-G solvation = -3837.272073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.86749 -40.18575 -37.98655 -37.17007 -36.55709 -34.86434 -33.45738 -32.58307 -32.11436 -29.83373 -29.17862 -27.45058 -26.97077 -25.29631 -24.64181 -23.47964 -22.75038 -20.91050 -20.14522 -19.79028 -18.78460 -18.32206 -17.83481 -17.29319 -16.69347 -16.39322 -15.98743 -15.78751 -15.70275 -15.62975 -15.37347 -15.10620 -14.67131 -14.59408 -14.35059 -14.19573 -13.97497 -13.64897 -13.52269 -13.43436 -13.24714 -13.16484 -13.06661 -13.02636 -12.84786 -12.68327 -12.62276 -12.52890 -12.42303 -12.21443 -12.16527 -11.93647 -11.82871 -11.67881 -11.63158 -11.47616 -11.14085 -10.86924 -10.73684 -10.58582 -10.45415 -9.43683 -9.24700 -8.17146 -6.29332 1.39067 1.41601 1.51859 1.69886 1.84661 1.95937 2.27036 2.44822 3.06896 3.14807 3.35107 3.72780 3.82022 3.85898 3.96610 4.06819 4.13390 4.16807 4.27659 4.36026 4.41427 4.46473 4.49904 4.63113 4.65444 4.68520 4.71562 4.75545 4.85190 4.85791 4.87007 4.96452 5.01600 5.07027 5.07523 5.13820 5.16680 5.20693 5.25124 5.32690 5.36299 5.42487 5.46057 5.52555 5.55906 5.59835 5.63170 5.74261 5.89629 6.13934 6.15692 6.42757 6.61349 6.78716 6.85880 7.36390 7.58672 8.89673 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.010289 B = 0.002747 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.678965 B =10188.742248 C =12074.744241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.090 3.910 3 H 0.052 0.948 4 N -0.680 5.680 5 C 0.051 3.949 6 C 0.500 3.500 7 O -0.577 6.577 8 N -0.600 5.600 9 C 0.260 3.740 10 C -0.537 4.537 11 H 0.053 0.947 12 C 0.010 3.990 13 N -0.926 5.926 14 Si 0.958 3.042 15 H -0.268 1.268 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.115 3.885 19 C -0.038 4.038 20 C 0.246 3.754 21 N -0.489 5.489 22 C -0.082 4.082 23 H 0.058 0.942 24 C -0.106 4.106 25 C -0.122 4.122 26 C -0.109 4.109 27 C -0.092 4.092 28 H 0.061 0.939 29 C -0.145 4.145 30 C -0.102 4.102 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.341 0.659 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.002 0.998 38 H 0.033 0.967 39 H 0.265 0.735 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.136 0.864 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.055 0.945 51 H 0.056 0.944 52 H 0.057 0.943 53 H 0.065 0.935 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.555 5.671 22.685 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.018 4.018 3 H 0.069 0.931 4 N -0.313 5.313 5 C -0.080 4.080 6 C 0.289 3.711 7 O -0.456 6.456 8 N -0.332 5.332 9 C 0.139 3.861 10 C -0.575 4.575 11 H 0.071 0.929 12 C -0.189 4.189 13 N -0.566 5.566 14 Si 0.784 3.216 15 H -0.192 1.192 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.010 4.010 19 C -0.079 4.079 20 C -0.071 4.071 21 N -0.167 5.167 22 C -0.101 4.101 23 H 0.076 0.924 24 C -0.143 4.143 25 C -0.159 4.159 26 C -0.147 4.147 27 C -0.110 4.110 28 H 0.079 0.921 29 C -0.202 4.202 30 C -0.140 4.140 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.160 0.840 35 H 0.092 0.908 36 H 0.141 0.859 37 H 0.020 0.980 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.123 0.877 42 H 0.137 0.863 43 H 0.153 0.847 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.075 0.925 52 H 0.076 0.924 53 H 0.083 0.917 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.393 6.360 22.270 25.385 hybrid contribution 2.099 -0.356 -0.561 2.201 sum -8.294 6.004 21.708 24.002 Atomic orbital electron populations 1.21898 0.93908 1.02192 1.01833 1.21611 0.96579 0.95599 0.88057 0.93058 1.60244 1.34398 1.32530 1.04114 1.21949 1.03292 0.93998 0.88805 1.21224 0.77548 0.87279 0.85039 1.90671 1.51596 1.18556 1.84773 1.48094 1.63806 1.10751 1.10507 1.18775 0.92908 0.91538 0.82877 1.21767 0.93411 1.33177 1.09185 0.92903 1.25735 1.03055 0.94787 0.95356 1.70035 1.37340 1.35304 1.13960 0.85508 0.80207 0.77712 0.78220 1.19193 1.21132 1.19928 1.21497 0.93664 0.81327 1.04521 1.19834 0.98214 0.82502 1.07354 1.29152 0.91830 0.94737 0.91390 1.81269 1.10515 1.13943 1.10948 1.21256 0.99365 0.95459 0.94045 0.92367 1.21485 1.00849 0.94820 0.97181 1.21557 1.00302 0.99002 0.95066 1.21562 1.00757 0.95120 0.97227 1.21118 0.99918 0.94957 0.95035 0.92097 1.21805 1.01344 1.00183 0.96858 1.21636 1.01332 0.98518 0.92515 0.90906 0.92784 0.92644 0.84002 0.90782 0.85863 0.97967 0.94907 0.92617 0.89902 0.87710 0.86280 0.84669 0.91605 0.93137 0.92258 0.92889 0.91790 0.91946 0.92579 0.92509 0.92379 0.91668 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.71 71.98 0.63 -1.57 16 2 C 0.09 1.58 2.44 44.92 0.11 1.69 16 3 H 0.05 0.82 7.80 -2.39 -0.02 0.80 16 4 N -0.68 -16.48 5.21 -495.61 -2.58 -19.06 16 5 C 0.05 1.21 4.52 85.56 0.39 1.59 16 6 C 0.50 17.98 7.71 87.65 0.68 18.66 16 7 O -0.58 -27.40 15.78 -3.06 -0.05 -27.44 16 8 N -0.60 -21.40 2.46 -826.16 -2.03 -23.43 16 9 C 0.26 12.61 5.16 85.63 0.44 13.05 16 10 C -0.54 -28.97 9.39 25.60 0.24 -28.73 16 11 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 12 C 0.01 0.53 5.46 84.66 0.46 1.00 16 13 N -0.93 -53.98 13.29 21.45 0.28 -53.69 16 14 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 C 0.11 2.77 5.17 86.38 0.45 3.21 16 19 C -0.04 -0.69 6.03 28.79 0.17 -0.51 16 20 C 0.25 5.28 15.43 89.44 1.38 6.67 16 21 N -0.49 -13.37 18.54 20.01 0.37 -13.00 16 22 C -0.08 -1.37 1.88 -10.79 -0.02 -1.39 16 23 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 24 C -0.11 -1.98 4.69 30.60 0.14 -1.84 16 25 C -0.12 -2.03 5.92 30.59 0.18 -1.85 16 26 C -0.11 -1.48 5.20 30.59 0.16 -1.32 16 27 C -0.09 -1.18 2.72 -10.79 -0.03 -1.21 16 28 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 29 C -0.14 -1.54 9.19 71.98 0.66 -0.87 16 30 C -0.10 -1.34 4.13 30.59 0.13 -1.21 16 31 H 0.07 0.89 6.43 -2.39 -0.02 0.88 16 32 H 0.05 0.81 7.45 -2.38 -0.02 0.80 16 33 H 0.05 1.00 6.43 -2.39 -0.02 0.99 16 34 H 0.34 9.49 7.89 -89.69 -0.71 8.79 16 35 H 0.07 1.46 7.32 -2.38 -0.02 1.44 16 36 H 0.12 2.16 6.48 -2.39 -0.02 2.14 16 37 H 0.00 0.13 7.42 -2.39 -0.02 0.11 16 38 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 39 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 40 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 41 H 0.10 1.91 6.44 -2.39 -0.02 1.89 16 42 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.14 1.77 7.22 -2.39 -0.02 1.75 16 44 H 0.07 1.21 6.43 -2.39 -0.02 1.19 16 45 H 0.05 1.21 7.48 -2.39 -0.02 1.19 16 46 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 47 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 52 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 53 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.07 0.90 6.43 -2.39 -0.02 0.88 16 Total: -1.00 -71.34 422.90 4.36 -66.99 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.17 Total: 18.53 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 6.17 Total: 5.36 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -3.96 Total: -109.19 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -71.34 4.36 -66.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452073650.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.692 kcal (2) G-P(sol) polarization free energy of solvation -71.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds