Wall clock time and date at job start Tue Mar 31 2020 19:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47034 * 2 1 4 4 N 1.46904 * 109.46815 * 240.00784 * 2 1 3 5 5 C 1.46902 * 110.99914 * 84.99392 * 4 2 1 6 6 C 1.50699 * 109.46944 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00018 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00043 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00248 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.47128 * 269.99866 * 9 8 6 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 C 1.46507 * 119.99687 * 0.02562 * 8 6 5 19 19 C 1.53002 * 109.47219 * 269.99856 * 18 8 6 20 20 C 1.47192 * 109.47111 * 180.02562 * 19 18 8 21 21 N 6.96661 * 79.94649 * 307.96494 * 2 1 3 22 22 C 1.52989 * 109.47395 * 120.00757 * 2 1 3 23 23 H 1.09009 * 109.47321 * 59.99948 * 22 2 1 24 24 C 1.53005 * 109.47229 * 179.97438 * 22 2 1 25 25 C 1.53002 * 109.47079 * 179.97438 * 24 22 2 26 26 C 1.52998 * 109.47132 * 300.00015 * 25 24 22 27 27 C 1.52994 * 109.46805 * 60.00422 * 26 25 24 28 28 H 1.09012 * 109.47038 * 179.97438 * 27 26 25 29 29 C 1.52998 * 109.47455 * 60.00047 * 27 26 25 30 30 C 1.52999 * 109.47250 * 299.99783 * 22 2 1 31 31 H 1.08997 * 109.47213 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46679 * 299.99277 * 1 2 3 33 33 H 1.08995 * 109.47464 * 59.99330 * 1 2 3 34 34 H 1.00902 * 110.99622 * 321.04527 * 4 2 1 35 35 H 1.09005 * 109.46869 * 60.00466 * 5 4 2 36 36 H 1.08998 * 109.47593 * 300.00154 * 5 4 2 37 37 H 1.09001 * 109.47786 * 150.00138 * 9 8 6 38 38 H 1.09006 * 109.47401 * 29.99724 * 9 8 6 39 39 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 40 40 H 1.08994 * 109.46878 * 30.00015 * 18 8 6 41 41 H 1.09002 * 109.46817 * 150.00396 * 18 8 6 42 42 H 1.09003 * 109.47088 * 300.00462 * 19 18 8 43 43 H 1.08998 * 109.46930 * 60.00022 * 19 18 8 44 44 H 1.08999 * 109.47052 * 300.00093 * 24 22 2 45 45 H 1.09002 * 109.46900 * 60.00244 * 24 22 2 46 46 H 1.09007 * 109.46588 * 179.97438 * 25 24 22 47 47 H 1.09002 * 109.46908 * 60.00429 * 25 24 22 48 48 H 1.08997 * 109.47130 * 300.00149 * 26 25 24 49 49 H 1.09004 * 109.46808 * 179.97438 * 26 25 24 50 50 H 1.08999 * 109.46905 * 299.99563 * 29 27 26 51 51 H 1.08995 * 109.47299 * 59.99655 * 29 27 26 52 52 H 1.08997 * 109.47425 * 179.97438 * 29 27 26 53 53 H 1.09002 * 109.47255 * 299.99986 * 30 22 2 54 54 H 1.08997 * 109.46885 * 60.00218 * 30 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0823 0.2229 -2.3469 6 6 2.5883 -0.5211 -3.5559 7 8 2.8686 -1.6979 -3.4702 8 7 2.7292 0.1214 -4.7323 9 6 3.2206 -0.6019 -5.9076 10 6 4.7236 -0.5073 -5.9637 11 1 5.2592 0.0375 -5.2003 12 6 5.4149 -1.1163 -6.9894 13 7 4.7627 -1.7793 -7.9193 14 14 7.2779 -0.9984 -7.0592 15 1 7.7761 -1.7327 -8.2499 16 1 7.6805 0.4280 -7.1524 17 1 7.8581 -1.5973 -5.8304 18 6 2.3911 1.5431 -4.8355 19 6 0.9185 1.6903 -5.2239 20 6 0.5790 3.1187 -5.3282 21 7 0.3139 4.2199 -5.4080 22 6 2.0401 -0.7214 1.2490 23 1 1.6768 -1.7491 1.2490 24 6 3.5701 -0.7219 1.2487 25 6 4.0802 -1.4427 2.4981 26 6 3.5707 -0.7208 3.7472 27 6 2.0408 -0.7203 3.7475 28 1 1.6777 -0.2063 4.6376 29 6 1.5303 -2.1627 3.7483 30 6 1.5302 -0.0003 2.4984 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.4495 -1.4977 -1.4102 35 1 2.7587 1.0465 -2.1182 36 1 1.0869 0.6166 -2.5525 37 1 2.7950 -0.1617 -6.8094 38 1 2.9247 -1.6489 -5.8400 39 1 3.7953 -1.8402 -7.8832 40 1 2.5638 2.0283 -3.8749 41 1 3.0159 2.0108 -5.5965 42 1 0.7458 1.2050 -6.1845 43 1 0.2937 1.2225 -4.4630 44 1 3.9331 -1.2358 0.3586 45 1 3.9338 0.3057 1.2486 46 1 5.1702 -1.4435 2.4976 47 1 3.7165 -2.4703 2.4986 48 1 3.9344 0.3068 3.7466 49 1 3.9337 -1.2346 4.6373 50 1 1.8932 -2.6770 2.8585 51 1 1.8937 -2.6762 4.6384 52 1 0.4403 -2.1624 3.7490 53 1 1.8935 1.0274 2.4985 54 1 0.4402 -0.0003 2.4985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452073658.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:15 Heat of formation + Delta-G solvation = -58.948845 kcal Electronic energy + Delta-G solvation = -29828.515134 eV Core-core repulsion = 25991.171375 eV Total energy + Delta-G solvation = -3837.343759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.95841 -40.30082 -38.08697 -37.36747 -36.69889 -35.14098 -33.03286 -32.49969 -32.13644 -29.87083 -28.96674 -27.61939 -26.78206 -25.36207 -24.63069 -23.72243 -22.83145 -21.37536 -20.21932 -19.41026 -18.95509 -18.65418 -17.94529 -17.32862 -16.60178 -16.28895 -15.91621 -15.89877 -15.62219 -15.60993 -15.32304 -14.89220 -14.83858 -14.52843 -14.46134 -14.21274 -14.08083 -13.84569 -13.61886 -13.59824 -13.50911 -13.38115 -13.16431 -12.97565 -12.86312 -12.84180 -12.46714 -12.41859 -12.35553 -12.16788 -12.03875 -11.95759 -11.92482 -11.80155 -11.59684 -11.14960 -11.01235 -10.80605 -10.70720 -10.55335 -10.52740 -9.49537 -9.18667 -8.61276 -6.36394 1.52843 1.60749 1.63474 1.78759 1.79195 1.85822 2.19928 2.57560 3.01213 3.17760 3.30541 3.75384 3.76550 3.90502 3.95350 3.98695 4.04186 4.17024 4.25710 4.36381 4.40811 4.47107 4.52747 4.56533 4.57975 4.58840 4.65792 4.74586 4.75158 4.81845 4.84140 4.89563 4.94049 4.98552 5.01253 5.07280 5.10093 5.17199 5.20856 5.23477 5.29832 5.38840 5.46405 5.49384 5.57962 5.59438 5.67494 5.74942 5.91404 6.11385 6.24933 6.45428 6.54857 6.55559 6.73125 7.36300 7.49866 8.74898 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.002990 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.320121 B = 9362.085476 C =11410.191081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.091 3.909 3 H 0.081 0.919 4 N -0.683 5.683 5 C 0.055 3.945 6 C 0.500 3.500 7 O -0.577 6.577 8 N -0.596 5.596 9 C 0.248 3.752 10 C -0.614 4.614 11 H 0.044 0.956 12 C -0.029 4.029 13 N -0.935 5.935 14 Si 1.111 2.889 15 H -0.283 1.283 16 H -0.264 1.264 17 H -0.282 1.282 18 C 0.115 3.885 19 C -0.036 4.036 20 C 0.245 3.755 21 N -0.485 5.485 22 C -0.068 4.068 23 H 0.063 0.937 24 C -0.102 4.102 25 C -0.122 4.122 26 C -0.111 4.111 27 C -0.089 4.089 28 H 0.076 0.924 29 C -0.150 4.150 30 C -0.105 4.105 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.344 0.656 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.028 0.972 38 H -0.002 1.002 39 H 0.258 0.742 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.137 0.863 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.052 0.948 51 H 0.053 0.947 52 H 0.056 0.944 53 H 0.063 0.937 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.352 6.102 22.435 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.019 4.019 3 H 0.100 0.900 4 N -0.315 5.315 5 C -0.077 4.077 6 C 0.289 3.711 7 O -0.456 6.456 8 N -0.328 5.328 9 C 0.126 3.874 10 C -0.653 4.653 11 H 0.062 0.938 12 C -0.228 4.228 13 N -0.572 5.572 14 Si 0.933 3.067 15 H -0.208 1.208 16 H -0.189 1.189 17 H -0.209 1.209 18 C -0.010 4.010 19 C -0.077 4.077 20 C -0.073 4.073 21 N -0.163 5.163 22 C -0.087 4.087 23 H 0.082 0.918 24 C -0.140 4.140 25 C -0.160 4.160 26 C -0.148 4.148 27 C -0.107 4.107 28 H 0.094 0.906 29 C -0.207 4.207 30 C -0.143 4.143 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.163 0.837 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.068 0.932 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.136 0.864 43 H 0.154 0.846 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.071 0.929 51 H 0.072 0.928 52 H 0.076 0.924 53 H 0.082 0.918 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.618 6.762 21.629 24.244 hybrid contribution -1.910 -0.305 0.100 1.936 sum -10.527 6.457 21.728 24.993 Atomic orbital electron populations 1.22525 0.96023 1.02351 1.03007 1.21670 0.93286 0.97756 0.89140 0.90043 1.60166 1.59011 1.09227 1.03052 1.21874 1.02131 0.95533 0.88117 1.21321 0.77687 0.87318 0.84787 1.90668 1.51555 1.18825 1.84559 1.47928 1.63934 1.10743 1.10183 1.18874 0.93550 0.91320 0.83647 1.22583 0.93536 1.36880 1.12300 0.93799 1.27106 1.10833 0.92519 0.92337 1.70927 1.09808 1.40950 1.35517 0.83000 0.69861 0.77577 0.76254 1.20792 1.18906 1.20851 1.21501 0.93751 0.81151 1.04607 1.19803 0.98013 0.82630 1.07278 1.29070 0.91954 0.94728 0.91534 1.81238 1.10359 1.13946 1.10774 1.21063 0.94991 0.99454 0.93176 0.91831 1.21375 0.95650 0.99884 0.97106 1.21578 0.99679 0.99576 0.95134 1.21545 0.95600 1.00441 0.97257 1.21073 0.95053 0.96446 0.98170 0.90566 1.21929 1.00902 0.96319 1.01598 1.21632 1.00699 0.98916 0.93068 0.92687 0.90389 0.92332 0.83680 0.87230 0.89296 0.95382 0.98433 0.93229 0.87548 0.90172 0.86355 0.84577 0.93347 0.92980 0.92978 0.92379 0.92059 0.91931 0.92931 0.92812 0.92447 0.91790 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 8.81 71.98 0.63 -1.71 16 2 C 0.09 1.52 2.17 44.91 0.10 1.62 16 3 H 0.08 1.29 7.80 -2.38 -0.02 1.28 16 4 N -0.68 -16.11 5.11 -495.57 -2.53 -18.64 16 5 C 0.06 1.27 4.52 85.56 0.39 1.65 16 6 C 0.50 17.87 7.71 87.66 0.68 18.55 16 7 O -0.58 -27.36 15.78 -3.02 -0.05 -27.41 16 8 N -0.60 -21.21 2.46 -826.14 -2.03 -23.24 16 9 C 0.25 11.90 4.47 85.64 0.38 12.28 16 10 C -0.61 -33.84 9.39 25.60 0.24 -33.60 16 11 H 0.04 2.44 7.81 -2.91 -0.02 2.41 16 12 C -0.03 -1.66 5.46 84.65 0.46 -1.20 16 13 N -0.93 -56.27 13.65 21.45 0.29 -55.98 16 14 Si 1.11 50.50 29.90 68.60 2.05 52.55 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 C 0.11 2.76 5.17 86.38 0.45 3.21 16 19 C -0.04 -0.62 6.03 28.79 0.17 -0.45 16 20 C 0.24 5.11 15.43 89.45 1.38 6.49 16 21 N -0.49 -13.04 18.53 20.00 0.37 -12.67 16 22 C -0.07 -1.16 1.69 -10.80 -0.02 -1.18 16 23 H 0.06 1.22 6.43 -2.38 -0.02 1.20 16 24 C -0.10 -2.15 5.05 30.60 0.15 -1.99 16 25 C -0.12 -2.28 5.65 30.59 0.17 -2.10 16 26 C -0.11 -1.63 5.45 30.59 0.17 -1.47 16 27 C -0.09 -1.16 3.19 -10.81 -0.03 -1.19 16 28 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 29 C -0.15 -2.03 8.50 71.98 0.61 -1.42 16 30 C -0.11 -1.38 4.37 30.58 0.13 -1.24 16 31 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 32 H 0.08 0.82 6.43 -2.39 -0.02 0.80 16 33 H 0.06 0.71 7.45 -2.39 -0.02 0.69 16 34 H 0.34 8.79 8.17 -89.69 -0.73 8.05 16 35 H 0.11 2.25 7.31 -2.38 -0.02 2.23 16 36 H 0.09 1.38 6.48 -2.39 -0.02 1.36 16 37 H 0.03 1.31 7.94 -2.39 -0.02 1.30 16 38 H 0.00 -0.13 7.29 -2.38 -0.02 -0.15 16 39 H 0.26 15.47 7.22 -92.71 -0.67 14.80 16 40 H 0.11 1.95 6.44 -2.39 -0.02 1.93 16 41 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16 42 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.14 1.59 7.22 -2.39 -0.02 1.58 16 44 H 0.05 1.33 7.60 -2.39 -0.02 1.31 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.06 1.13 6.43 -2.39 -0.02 1.11 16 48 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 49 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 50 H 0.05 0.84 4.81 -2.39 -0.01 0.83 16 51 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 53 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 54 H 0.07 0.82 6.43 -2.39 -0.02 0.80 16 Total: -1.00 -74.43 418.55 4.43 -70.00 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.25 Total: 19.13 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 6.07 Total: -3.74 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -3.90 Total: -110.53 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.05 Total: -27.41 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.05 Total: 52.55 kcal Total: -74.43 4.43 -70.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452073658.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.051 kcal (2) G-P(sol) polarization free energy of solvation -74.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds