Wall clock time and date at job start Tue Mar 31 2020 19:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47203 * 2 1 4 4 N 1.46895 * 109.47741 * 239.99634 * 2 1 3 5 5 C 1.46904 * 111.00011 * 84.99578 * 4 2 1 6 6 C 1.50700 * 109.47192 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99803 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.28082 * 6 5 4 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 5 10 10 C 1.50709 * 109.47273 * 89.99834 * 9 8 6 11 11 H 1.07999 * 119.99476 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00210 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99914 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00074 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46996 * 90.00193 * 14 12 10 16 16 H 1.48502 * 109.46931 * 210.00078 * 14 12 10 17 17 H 1.48498 * 109.47167 * 330.00145 * 14 12 10 18 18 C 1.46496 * 120.00345 * 359.72090 * 8 6 5 19 19 C 1.53005 * 109.46942 * 90.00092 * 18 8 6 20 20 C 1.47196 * 109.47093 * 179.97438 * 19 18 8 21 21 N 6.96282 * 102.41988 * 316.31385 * 2 1 3 22 22 C 1.53002 * 109.47184 * 119.99313 * 2 1 3 23 23 H 1.08995 * 109.47378 * 180.02562 * 22 2 1 24 24 C 1.53002 * 109.46925 * 60.00257 * 22 2 1 25 25 C 1.52997 * 109.47505 * 179.97438 * 24 22 2 26 26 C 1.53001 * 109.46814 * 60.00306 * 25 24 22 27 27 C 1.53001 * 109.47193 * 299.99996 * 26 25 24 28 28 H 1.09000 * 109.47200 * 180.02562 * 27 26 25 29 29 C 1.53003 * 109.46977 * 300.00290 * 27 26 25 30 30 C 1.53001 * 109.47287 * 300.00629 * 22 2 1 31 31 H 1.09008 * 109.47203 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47512 * 300.00203 * 1 2 3 33 33 H 1.09000 * 109.47143 * 60.00604 * 1 2 3 34 34 H 1.00903 * 110.99867 * 321.04965 * 4 2 1 35 35 H 1.09009 * 109.46542 * 60.00300 * 5 4 2 36 36 H 1.08998 * 109.47050 * 300.00834 * 5 4 2 37 37 H 1.09000 * 109.46889 * 209.99487 * 9 8 6 38 38 H 1.09001 * 109.47460 * 330.00097 * 9 8 6 39 39 H 0.97000 * 120.00447 * 179.97438 * 13 12 10 40 40 H 1.08995 * 109.47364 * 210.00706 * 18 8 6 41 41 H 1.09002 * 109.47090 * 330.00257 * 18 8 6 42 42 H 1.08998 * 109.46999 * 300.00039 * 19 18 8 43 43 H 1.08997 * 109.46656 * 60.00331 * 19 18 8 44 44 H 1.09004 * 109.47120 * 300.00257 * 24 22 2 45 45 H 1.09000 * 109.46841 * 60.00086 * 24 22 2 46 46 H 1.09004 * 109.47324 * 300.00355 * 25 24 22 47 47 H 1.08995 * 109.47605 * 179.97438 * 25 24 22 48 48 H 1.09000 * 109.47240 * 180.02562 * 26 25 24 49 49 H 1.08995 * 109.47312 * 59.99890 * 26 25 24 50 50 H 1.09003 * 109.46868 * 179.97438 * 29 27 26 51 51 H 1.09000 * 109.47181 * 299.99486 * 29 27 26 52 52 H 1.09000 * 109.47385 * 59.99832 * 29 27 26 53 53 H 1.08994 * 109.47026 * 299.99463 * 30 22 2 54 54 H 1.09002 * 109.46905 * 59.99997 * 30 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2225 -2.3469 6 6 2.5875 -0.5220 -3.5559 7 8 2.8671 -1.6990 -3.4702 8 7 2.7333 0.1216 -4.7311 9 6 3.2299 -0.6007 -5.9049 10 6 2.0673 -1.1912 -6.6605 11 1 1.0593 -1.0436 -6.3018 12 6 2.2904 -1.9199 -7.8095 13 7 3.5179 -2.1000 -8.2459 14 14 0.8494 -2.6524 -8.7456 15 1 0.3674 -1.6760 -9.7554 16 1 1.2843 -3.8971 -9.4287 17 1 -0.2490 -2.9663 -7.7968 18 6 2.3950 1.5432 -4.8348 19 6 3.6305 2.3862 -4.5124 20 6 3.2908 3.8146 -4.6171 21 7 3.0275 4.9172 -4.6967 22 6 2.0400 -0.7211 1.2493 23 1 3.1299 -0.7207 1.2496 24 6 1.5300 -2.1636 1.2494 25 6 2.0404 -2.8850 2.4984 26 6 1.5308 -2.1639 3.7479 27 6 2.0408 -0.7214 3.7479 28 1 1.6781 -0.2078 4.6382 29 6 3.5708 -0.7214 3.7473 30 6 1.5299 0.0002 2.4985 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.4496 -1.4980 -1.4099 35 1 2.7589 1.0462 -2.1181 36 1 1.0871 0.6162 -2.5525 37 1 3.7720 0.0881 -6.5528 38 1 3.8981 -1.3998 -5.5840 39 1 3.6750 -2.6130 -9.0541 40 1 2.0588 1.7637 -5.8478 41 1 1.5993 1.7797 -4.1284 42 1 3.9666 2.1656 -3.4993 43 1 4.4261 2.1496 -5.2188 44 1 0.4399 -2.1637 1.2494 45 1 1.8934 -2.6775 0.3595 46 1 3.1305 -2.8850 2.4980 47 1 1.6768 -3.9125 2.4987 48 1 1.8948 -2.6776 4.6377 49 1 0.4409 -2.1639 3.7482 50 1 3.9341 0.3063 3.7468 51 1 3.9345 -1.2352 4.6371 52 1 3.9339 -1.2351 2.8571 53 1 1.8932 1.0278 2.4985 54 1 0.4398 0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452073660.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:18 Heat of formation + Delta-G solvation = -53.713993 kcal Electronic energy + Delta-G solvation = -29755.812418 eV Core-core repulsion = 25918.695659 eV Total energy + Delta-G solvation = -3837.116759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.90776 -40.32653 -37.99083 -37.27950 -36.56209 -34.85941 -33.12042 -32.31732 -32.10644 -29.84355 -29.03885 -27.66182 -26.93351 -25.28721 -24.70499 -23.84467 -23.07578 -20.96307 -19.94147 -19.11717 -18.79262 -18.32105 -17.85514 -17.34000 -16.59107 -16.40893 -16.15411 -15.80085 -15.71214 -15.40488 -15.31778 -15.13303 -14.67240 -14.55944 -14.44929 -14.17371 -13.87244 -13.73542 -13.58502 -13.50577 -13.45077 -13.20895 -13.02338 -12.99239 -12.83541 -12.68813 -12.53129 -12.50294 -12.38539 -12.26449 -12.16294 -11.93369 -11.84126 -11.66034 -11.62895 -11.53561 -11.03282 -10.72032 -10.67854 -10.57582 -10.42335 -9.43126 -9.19749 -8.16800 -6.29180 1.39572 1.42026 1.51227 1.70368 1.85063 1.96875 2.27697 2.45217 3.07996 3.15139 3.37444 3.84199 3.85302 3.90576 3.95848 4.07624 4.14170 4.16987 4.32307 4.38906 4.46542 4.46963 4.54411 4.56193 4.63024 4.66446 4.69291 4.76556 4.84235 4.85975 4.88650 4.93471 5.03552 5.07769 5.11038 5.14474 5.17958 5.23663 5.26306 5.31945 5.36477 5.41049 5.46449 5.53961 5.56441 5.63067 5.66043 5.79315 5.90130 6.14458 6.16949 6.44888 6.61804 6.78924 6.86471 7.36652 7.59435 8.89817 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.010722 B = 0.002800 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.745934 B = 9998.590246 C =11736.805146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.091 3.909 3 H 0.088 0.912 4 N -0.681 5.681 5 C 0.051 3.949 6 C 0.500 3.500 7 O -0.578 6.578 8 N -0.600 5.600 9 C 0.261 3.739 10 C -0.538 4.538 11 H 0.053 0.947 12 C 0.010 3.990 13 N -0.926 5.926 14 Si 0.958 3.042 15 H -0.267 1.267 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.115 3.885 19 C -0.038 4.038 20 C 0.246 3.754 21 N -0.489 5.489 22 C -0.068 4.068 23 H 0.066 0.934 24 C -0.113 4.113 25 C -0.121 4.121 26 C -0.110 4.110 27 C -0.089 4.089 28 H 0.075 0.925 29 C -0.151 4.151 30 C -0.106 4.106 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.341 0.659 35 H 0.125 0.875 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.002 0.998 39 H 0.265 0.735 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.136 0.864 43 H 0.119 0.881 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.055 0.945 51 H 0.053 0.947 52 H 0.053 0.947 53 H 0.067 0.933 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.462 6.846 23.477 24.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.019 4.019 3 H 0.106 0.894 4 N -0.313 5.313 5 C -0.081 4.081 6 C 0.288 3.712 7 O -0.457 6.457 8 N -0.331 5.331 9 C 0.139 3.861 10 C -0.577 4.577 11 H 0.071 0.929 12 C -0.189 4.189 13 N -0.567 5.567 14 Si 0.783 3.217 15 H -0.193 1.193 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.010 4.010 19 C -0.079 4.079 20 C -0.071 4.071 21 N -0.167 5.167 22 C -0.087 4.087 23 H 0.085 0.915 24 C -0.150 4.150 25 C -0.158 4.158 26 C -0.148 4.148 27 C -0.108 4.108 28 H 0.093 0.907 29 C -0.208 4.208 30 C -0.144 4.144 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.160 0.840 35 H 0.143 0.857 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.020 0.980 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.154 0.846 43 H 0.137 0.863 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.072 0.928 52 H 0.072 0.928 53 H 0.086 0.914 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.932 7.874 23.403 25.004 hybrid contribution -1.174 -1.198 -1.370 2.165 sum -5.106 6.676 22.034 23.583 Atomic orbital electron populations 1.22584 0.96799 1.02224 1.02647 1.21658 0.93017 0.97902 0.89274 0.89358 1.60280 1.58740 1.09116 1.03125 1.21944 1.01967 0.95928 0.88245 1.21262 0.77826 0.87291 0.84799 1.90670 1.51524 1.18464 1.85024 1.48086 1.64712 1.10241 1.10083 1.18766 0.93689 0.91473 0.82136 1.21749 0.93909 1.33366 1.08667 0.92888 1.25732 0.98212 0.96514 0.98437 1.70027 1.21142 1.41541 1.23947 0.85559 0.79412 0.78065 0.78634 1.19264 1.21075 1.19837 1.21498 0.96058 0.78821 1.04624 1.19836 1.00601 0.80008 1.07463 1.29158 0.91882 0.94720 0.91337 1.81271 1.10237 1.14230 1.10980 1.21066 1.00231 0.94384 0.92999 0.91536 1.21551 1.00304 0.95791 0.97403 1.21550 1.00677 0.98654 0.94941 1.21539 1.00443 0.95492 0.97320 1.21091 0.95746 0.95805 0.98123 0.90695 1.21935 0.95591 1.01669 1.01610 1.21654 1.00823 0.98797 0.93120 0.92736 0.90341 0.93031 0.83969 0.85678 0.90735 0.94938 0.97994 0.92611 0.89952 0.87641 0.84592 0.86330 0.91985 0.93424 0.92402 0.92656 0.91963 0.91955 0.92604 0.92835 0.92838 0.91434 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 8.46 71.98 0.61 -2.17 16 2 C 0.09 1.54 2.42 44.91 0.11 1.65 16 3 H 0.09 1.29 7.80 -2.38 -0.02 1.28 16 4 N -0.68 -16.32 5.39 -495.57 -2.67 -19.00 16 5 C 0.05 1.18 4.52 85.56 0.39 1.56 16 6 C 0.50 17.89 7.71 87.66 0.68 18.56 16 7 O -0.58 -27.44 15.78 -3.04 -0.05 -27.49 16 8 N -0.60 -21.30 2.46 -826.15 -2.03 -23.33 16 9 C 0.26 12.62 5.16 85.64 0.44 13.06 16 10 C -0.54 -29.05 9.39 25.60 0.24 -28.81 16 11 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 12 C 0.01 0.56 5.46 84.65 0.46 1.02 16 13 N -0.93 -54.03 13.29 21.45 0.28 -53.74 16 14 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 16 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 C 0.11 2.74 5.16 86.38 0.45 3.19 16 19 C -0.04 -0.68 6.02 28.79 0.17 -0.51 16 20 C 0.25 5.25 15.43 89.44 1.38 6.63 16 21 N -0.49 -13.33 18.54 20.01 0.37 -12.96 16 22 C -0.07 -1.13 1.94 -10.79 -0.02 -1.15 16 23 H 0.07 1.32 6.43 -2.39 -0.02 1.30 16 24 C -0.11 -2.10 4.58 30.59 0.14 -1.96 16 25 C -0.12 -2.04 5.65 30.59 0.17 -1.87 16 26 C -0.11 -1.50 5.45 30.60 0.17 -1.33 16 27 C -0.09 -1.13 3.20 -10.77 -0.03 -1.16 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 C -0.15 -2.04 8.50 71.98 0.61 -1.43 16 30 C -0.11 -1.36 4.38 30.61 0.13 -1.22 16 31 H 0.05 0.91 6.42 -2.38 -0.02 0.90 16 32 H 0.08 0.95 6.43 -2.39 -0.02 0.93 16 33 H 0.05 0.79 7.45 -2.39 -0.02 0.78 16 34 H 0.34 9.47 7.42 -89.69 -0.67 8.80 16 35 H 0.13 2.09 7.07 -2.38 -0.02 2.08 16 36 H 0.07 1.44 6.70 -2.39 -0.02 1.42 16 37 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 38 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 39 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 40 H 0.08 2.19 8.07 -2.39 -0.02 2.18 16 41 H 0.11 1.88 6.45 -2.39 -0.02 1.87 16 42 H 0.14 1.74 7.20 -2.39 -0.02 1.72 16 43 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.06 1.09 6.43 -2.38 -0.02 1.08 16 45 H 0.05 1.13 7.21 -2.39 -0.02 1.11 16 46 H 0.06 1.05 6.43 -2.38 -0.02 1.04 16 47 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 52 H 0.05 0.86 4.81 -2.39 -0.01 0.85 16 53 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 54 H 0.07 0.82 6.43 -2.39 -0.02 0.81 16 Total: -1.00 -71.62 415.24 4.26 -67.36 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.23 Total: 19.37 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 6.09 Total: 4.06 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -4.04 Total: -109.02 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.05 Total: -27.49 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -71.62 4.26 -67.36 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452073660.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.650 kcal (2) G-P(sol) polarization free energy of solvation -71.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds