Wall clock time and date at job start Tue Mar 31 2020 19:37:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.47067 * 2 1
4 4 N 1.46898 * 109.47374 * 239.99989 * 2 1 3
5 5 C 1.46900 * 111.00190 * 85.00128 * 4 2 1
6 6 C 1.50698 * 109.47212 * 180.02562 * 5 4 2
7 7 O 1.21281 * 119.99914 * 359.97438 * 6 5 4
8 8 N 1.34771 * 120.00114 * 180.02562 * 6 5 4
9 9 C 1.46503 * 120.00281 * 180.02562 * 8 6 5
10 10 C 1.50698 * 109.47438 * 89.99809 * 9 8 6
11 11 H 1.07997 * 119.99831 * 0.02562 * 10 9 8
12 12 C 1.37873 * 120.00108 * 180.02562 * 10 9 8
13 13 N 1.31512 * 120.00223 * 0.02562 * 12 10 9
14 14 Si 1.86799 * 120.00239 * 179.97438 * 12 10 9
15 15 H 1.48502 * 109.46988 * 59.99683 * 14 12 10
16 16 H 1.48500 * 109.47457 * 180.02562 * 14 12 10
17 17 H 1.48507 * 109.47063 * 300.00012 * 14 12 10
18 18 C 1.46503 * 119.99973 * 359.97438 * 8 6 5
19 19 C 1.53005 * 109.46739 * 90.00404 * 18 8 6
20 20 C 1.47197 * 109.47054 * 180.02562 * 19 18 8
21 21 N 6.96649 * 102.38480 * 316.25803 * 2 1 3
22 22 C 1.52997 * 109.47092 * 119.99853 * 2 1 3
23 23 H 1.09002 * 109.47497 * 59.99850 * 22 2 1
24 24 C 1.53002 * 109.47415 * 180.02562 * 22 2 1
25 25 C 1.53000 * 109.47233 * 180.02562 * 24 22 2
26 26 C 1.52997 * 109.47060 * 299.99657 * 25 24 22
27 27 C 1.52999 * 109.47317 * 59.99960 * 26 25 24
28 28 H 1.09002 * 109.46716 * 60.00091 * 27 26 25
29 29 C 1.53002 * 109.47628 * 180.02562 * 27 26 25
30 30 C 1.52997 * 109.47232 * 300.00075 * 22 2 1
31 31 H 1.08996 * 109.46876 * 299.99857 * 1 2 3
32 32 H 1.09000 * 109.46497 * 60.00247 * 1 2 3
33 33 H 1.09002 * 109.47067 * 180.02562 * 1 2 3
34 34 H 1.00907 * 111.00120 * 321.04569 * 4 2 1
35 35 H 1.09005 * 109.46934 * 299.99903 * 5 4 2
36 36 H 1.08993 * 109.47226 * 60.00131 * 5 4 2
37 37 H 1.08997 * 109.46928 * 210.00128 * 9 8 6
38 38 H 1.08999 * 109.46667 * 329.99780 * 9 8 6
39 39 H 0.96992 * 120.00542 * 180.02562 * 13 12 10
40 40 H 1.08995 * 109.47452 * 210.00058 * 18 8 6
41 41 H 1.08996 * 109.47029 * 330.00708 * 18 8 6
42 42 H 1.09004 * 109.46808 * 299.99808 * 19 18 8
43 43 H 1.08990 * 109.47349 * 60.00018 * 19 18 8
44 44 H 1.08992 * 109.47063 * 59.99950 * 24 22 2
45 45 H 1.09004 * 109.46733 * 299.99664 * 24 22 2
46 46 H 1.09002 * 109.47398 * 59.99826 * 25 24 22
47 47 H 1.09001 * 109.47194 * 180.02562 * 25 24 22
48 48 H 1.08996 * 109.47853 * 180.02562 * 26 25 24
49 49 H 1.09002 * 109.47153 * 300.00319 * 26 25 24
50 50 H 1.09001 * 109.47142 * 180.02562 * 29 27 26
51 51 H 1.08996 * 109.46698 * 300.00222 * 29 27 26
52 52 H 1.09002 * 109.46838 * 59.99718 * 29 27 26
53 53 H 1.09002 * 109.47153 * 299.99992 * 30 22 2
54 54 H 1.09001 * 109.47289 * 60.00075 * 30 22 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0197 -0.6925 -1.1994
5 6 2.0826 0.2226 -2.3469
6 6 2.5875 -0.5218 -3.5560
7 8 2.8679 -1.6987 -3.4701
8 7 2.7285 0.1204 -4.7324
9 6 3.2188 -0.6034 -5.9080
10 6 2.0521 -1.1932 -6.6575
11 1 1.0460 -1.0436 -6.2948
12 6 2.2692 -1.9240 -7.8064
13 7 3.4944 -2.1067 -8.2479
14 14 0.8230 -2.6557 -8.7352
15 1 -0.0885 -1.5667 -9.1694
16 1 1.3202 -3.3903 -9.9261
17 1 0.0877 -3.5924 -7.8478
18 6 2.3904 1.5421 -4.8360
19 6 3.6276 2.3849 -4.5198
20 6 3.2878 3.8133 -4.6232
21 7 3.0242 4.9159 -4.7046
22 6 2.0400 -0.7212 1.2492
23 1 1.6767 -1.7489 1.2493
24 6 3.5700 -0.7207 1.2496
25 6 4.0800 -1.4425 2.4986
26 6 3.5695 -0.7221 3.7481
27 6 2.0395 -0.7225 3.7478
28 1 1.6765 -1.7503 3.7472
29 6 1.5289 -0.0015 4.9970
30 6 1.5300 0.0000 2.4984
31 1 -0.3633 0.5138 0.8900
32 1 -0.3632 0.5138 -0.8900
33 1 -0.3633 -1.0277 0.0005
34 1 1.4496 -1.4980 -1.4100
35 1 1.0872 0.6163 -2.5526
36 1 2.7589 1.0461 -2.1182
37 1 3.7587 0.0842 -6.5589
38 1 3.8877 -1.4029 -5.5894
39 1 3.6471 -2.6204 -9.0563
40 1 2.0500 1.7619 -5.8478
41 1 1.5979 1.7797 -4.1263
42 1 3.9680 2.1651 -3.5078
43 1 4.4201 2.1473 -5.2293
44 1 3.9330 0.3070 1.2498
45 1 3.9337 -1.2344 0.3597
46 1 3.7170 -2.4703 2.4980
47 1 5.1700 -1.4417 2.4991
48 1 3.9331 -1.2359 4.6379
49 1 3.9325 0.3057 3.7487
50 1 0.4389 -0.0023 4.9969
51 1 1.8922 -0.5153 5.8869
52 1 1.8920 1.0263 4.9972
53 1 1.8933 1.0277 2.4984
54 1 0.4400 0.0000 2.4985
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000452073662.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:37:22
Heat of formation + Delta-G solvation = -59.459913 kcal
Electronic energy + Delta-G solvation = -29575.123725 eV
Core-core repulsion = 25737.757805 eV
Total energy + Delta-G solvation = -3837.365920 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.82770 -40.04604 -37.98653 -37.25544 -36.55813 -34.85745 -33.35183 -32.69810
-32.10857 -29.94468 -29.15132 -27.42527 -26.67879 -25.28510 -24.55132 -23.60757
-22.25429 -21.12029 -20.57683 -19.83735 -18.78431 -18.31442 -17.81723 -17.25224
-16.53336 -16.40238 -16.07903 -15.92791 -15.62718 -15.31281 -15.15987 -14.83587
-14.66475 -14.57007 -14.29314 -14.24088 -13.98777 -13.82941 -13.57781 -13.50549
-13.47291 -13.18550 -13.09535 -12.96064 -12.84237 -12.66755 -12.52994 -12.49365
-12.25572 -12.17876 -12.12861 -12.03568 -11.83580 -11.73794 -11.67324 -11.50086
-11.19797 -10.82535 -10.74164 -10.57297 -10.43551 -9.42935 -9.17509 -8.16423
-6.28845 1.40168 1.43110 1.49744 1.70370 1.84923 1.97083 2.27820
2.45370 3.07661 3.15323 3.36139 3.76211 3.85138 3.92658 4.02263
4.07255 4.14172 4.16131 4.33212 4.38930 4.44975 4.46425 4.49795
4.55663 4.66589 4.69489 4.74810 4.80523 4.84516 4.86129 4.88371
4.97681 4.98241 5.07701 5.09019 5.13882 5.14337 5.23926 5.29130
5.31225 5.36297 5.39098 5.48653 5.50842 5.60383 5.63217 5.69204
5.74953 5.90264 6.14682 6.17188 6.44525 6.61751 6.79012 6.86735
7.36860 7.59820 8.89986
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.011490 B = 0.002644 C = 0.002362
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2436.212052 B =10586.180610 C =11852.961071
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.092 3.908
3 H 0.088 0.912
4 N -0.679 5.679
5 C 0.052 3.948
6 C 0.500 3.500
7 O -0.578 6.578
8 N -0.600 5.600
9 C 0.261 3.739
10 C -0.538 4.538
11 H 0.053 0.947
12 C 0.010 3.990
13 N -0.926 5.926
14 Si 0.957 3.043
15 H -0.263 1.263
16 H -0.283 1.283
17 H -0.279 1.279
18 C 0.115 3.885
19 C -0.038 4.038
20 C 0.246 3.754
21 N -0.489 5.489
22 C -0.068 4.068
23 H 0.055 0.945
24 C -0.102 4.102
25 C -0.121 4.121
26 C -0.110 4.110
27 C -0.092 4.092
28 H 0.061 0.939
29 C -0.144 4.144
30 C -0.104 4.104
31 H 0.078 0.922
32 H 0.053 0.947
33 H 0.050 0.950
34 H 0.341 0.659
35 H 0.075 0.925
36 H 0.125 0.875
37 H 0.033 0.967
38 H 0.002 0.998
39 H 0.265 0.735
40 H 0.082 0.918
41 H 0.105 0.895
42 H 0.136 0.864
43 H 0.119 0.881
44 H 0.058 0.942
45 H 0.053 0.947
46 H 0.051 0.949
47 H 0.057 0.943
48 H 0.061 0.939
49 H 0.063 0.937
50 H 0.056 0.944
51 H 0.055 0.945
52 H 0.056 0.944
53 H 0.066 0.934
54 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.629 7.992 23.675 25.250
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C -0.017 4.017
3 H 0.106 0.894
4 N -0.310 5.310
5 C -0.079 4.079
6 C 0.289 3.711
7 O -0.457 6.457
8 N -0.332 5.332
9 C 0.140 3.860
10 C -0.577 4.577
11 H 0.071 0.929
12 C -0.189 4.189
13 N -0.566 5.566
14 Si 0.782 3.218
15 H -0.188 1.188
16 H -0.208 1.208
17 H -0.205 1.205
18 C -0.010 4.010
19 C -0.079 4.079
20 C -0.071 4.071
21 N -0.167 5.167
22 C -0.087 4.087
23 H 0.073 0.927
24 C -0.139 4.139
25 C -0.159 4.159
26 C -0.147 4.147
27 C -0.110 4.110
28 H 0.079 0.921
29 C -0.202 4.202
30 C -0.142 4.142
31 H 0.097 0.903
32 H 0.072 0.928
33 H 0.069 0.931
34 H 0.159 0.841
35 H 0.093 0.907
36 H 0.142 0.858
37 H 0.050 0.950
38 H 0.020 0.980
39 H 0.074 0.926
40 H 0.100 0.900
41 H 0.124 0.876
42 H 0.154 0.846
43 H 0.137 0.863
44 H 0.076 0.924
45 H 0.072 0.928
46 H 0.070 0.930
47 H 0.076 0.924
48 H 0.079 0.921
49 H 0.081 0.919
50 H 0.075 0.925
51 H 0.074 0.926
52 H 0.075 0.925
53 H 0.085 0.915
54 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -3.097 9.025 23.596 25.452
hybrid contribution -1.201 -1.234 -1.344 2.184
sum -4.298 7.791 22.252 23.965
Atomic orbital electron populations
1.22543 0.96699 1.02087 1.02790 1.21660 0.92815 0.98039 0.89200
0.89407 1.60244 1.58621 1.09096 1.03054 1.21922 1.01938 0.95882
0.88208 1.21247 0.77805 0.87277 0.84784 1.90671 1.51464 1.18462
1.85057 1.48091 1.64892 1.10233 1.09946 1.18761 0.93739 0.91444
0.82101 1.21714 0.93914 1.33342 1.08753 0.92873 1.25731 0.98249
0.96520 0.98403 1.70015 1.21347 1.41399 1.23856 0.85627 0.79579
0.78763 0.77787 1.18787 1.20827 1.20488 1.21497 0.96025 0.78835
1.04636 1.19837 1.00595 0.80012 1.07474 1.29163 0.91886 0.94722
0.91339 1.81275 1.10232 1.14230 1.10970 1.21034 0.95509 0.98956
0.93189 0.92694 1.21380 0.95090 1.00240 0.97207 1.21550 1.00013
0.99146 0.95168 1.21568 0.95254 1.00642 0.97237 1.21124 0.95342
0.99484 0.95063 0.92095 1.21806 1.01015 1.00467 0.96891 1.21670
1.00504 0.99212 0.92787 0.90305 0.92813 0.93093 0.84061 0.90734
0.85772 0.94951 0.98008 0.92607 0.89965 0.87643 0.84617 0.86321
0.92353 0.92817 0.93046 0.92399 0.92060 0.91869 0.92473 0.92635
0.92458 0.91520 0.91263
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.74 8.81 71.98 0.63 -2.11 16
2 C 0.09 1.56 2.17 44.92 0.10 1.66 16
3 H 0.09 1.30 7.80 -2.39 -0.02 1.28 16
4 N -0.68 -16.07 5.11 -495.59 -2.53 -18.60 16
5 C 0.05 1.20 4.52 85.56 0.39 1.58 16
6 C 0.50 17.79 7.71 87.66 0.68 18.47 16
7 O -0.58 -27.31 15.78 -3.03 -0.05 -27.35 16
8 N -0.60 -21.24 2.46 -826.16 -2.03 -23.27 16
9 C 0.26 12.61 5.16 85.63 0.44 13.05 16
10 C -0.54 -29.01 9.39 25.60 0.24 -28.77 16
11 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16
12 C 0.01 0.56 5.46 84.65 0.46 1.02 16
13 N -0.93 -53.98 13.29 21.45 0.28 -53.70 16
14 Si 0.96 43.62 29.54 68.60 2.03 45.65 16
15 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16
16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16
18 C 0.11 2.74 5.17 86.38 0.45 3.19 16
19 C -0.04 -0.68 6.03 28.79 0.17 -0.51 16
20 C 0.25 5.24 15.44 89.43 1.38 6.62 16
21 N -0.49 -13.32 18.54 20.01 0.37 -12.95 16
22 C -0.07 -1.15 1.96 -10.79 -0.02 -1.17 16
23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
24 C -0.10 -1.93 5.05 30.60 0.15 -1.78 16
25 C -0.12 -2.09 5.92 30.59 0.18 -1.90 16
26 C -0.11 -1.53 5.20 30.59 0.16 -1.37 16
27 C -0.09 -1.20 2.72 -10.78 -0.03 -1.23 16
28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
29 C -0.14 -1.56 9.19 71.98 0.66 -0.89 16
30 C -0.10 -1.36 4.13 30.61 0.13 -1.24 16
31 H 0.08 0.95 6.43 -2.39 -0.02 0.93 16
32 H 0.05 0.82 7.45 -2.39 -0.02 0.80 16
33 H 0.05 0.85 8.13 -2.39 -0.02 0.83 16
34 H 0.34 9.35 8.17 -89.69 -0.73 8.62 16
35 H 0.07 1.42 6.70 -2.38 -0.02 1.41 16
36 H 0.12 2.07 7.10 -2.39 -0.02 2.05 16
37 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16
38 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16
39 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16
40 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16
41 H 0.11 1.88 6.44 -2.39 -0.02 1.86 16
42 H 0.14 1.73 7.22 -2.38 -0.02 1.71 16
43 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16
44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
45 H 0.05 1.33 7.60 -2.39 -0.02 1.31 16
46 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
47 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
48 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16
49 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
50 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16
51 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16
52 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16
53 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16
54 H 0.07 0.83 6.43 -2.39 -0.02 0.81 16
Total: -1.00 -71.30 426.91 4.38 -66.92
By element:
Atomic # 1 Polarization: 18.54 SS G_CDS: 0.13 Total: 18.68 kcal
Atomic # 6 Polarization: -1.54 SS G_CDS: 6.17 Total: 4.63 kcal
Atomic # 7 Polarization: -104.61 SS G_CDS: -3.90 Total: -108.52 kcal
Atomic # 8 Polarization: -27.31 SS G_CDS: -0.05 Total: -27.35 kcal
Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal
Total: -71.30 4.38 -66.92 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000452073662.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.456 kcal
(2) G-P(sol) polarization free energy of solvation -71.295 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.839 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.916 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.460 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds