Wall clock time and date at job start Tue Mar 31 2020 18:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99439 * 2 1 4 4 C 1.50693 * 120.00101 * 179.97438 * 2 1 3 5 5 N 1.46896 * 109.47394 * 263.43625 * 4 2 1 6 6 C 1.46841 * 111.00082 * 51.98976 * 5 4 2 7 7 C 1.53041 * 109.52386 * 185.84329 * 6 5 4 8 8 C 1.53123 * 109.27796 * 300.81785 * 7 6 5 9 9 N 1.46488 * 109.52402 * 177.55932 * 8 7 6 10 10 C 1.34781 * 120.00418 * 85.31939 * 9 8 7 11 11 O 1.21595 * 119.99245 * 355.05302 * 10 9 8 12 12 N 1.34768 * 120.00599 * 175.04968 * 10 9 8 13 13 C 1.46926 * 120.63081 * 184.94807 * 12 10 9 14 14 C 1.52761 * 109.01061 * 233.58367 * 13 12 10 15 15 C 1.53041 * 109.38314 * 305.59031 * 14 13 12 16 16 C 1.50701 * 109.45162 * 181.24878 * 15 14 13 17 17 H 1.07991 * 120.00306 * 239.94142 * 16 15 14 18 18 C 1.37882 * 119.99757 * 59.93709 * 16 15 14 19 19 N 1.31518 * 119.99789 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00150 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47188 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46883 * 120.00122 * 20 18 16 23 23 H 1.48493 * 109.47236 * 240.00168 * 20 18 16 24 24 C 1.53050 * 109.53754 * 61.23915 * 15 14 13 25 25 C 1.46934 * 120.62908 * 5.22988 * 12 10 9 26 26 C 1.53120 * 109.15772 * 57.65702 * 8 7 6 27 27 C 1.46847 * 111.00010 * 176.20395 * 5 4 2 28 28 H 1.08000 * 120.00028 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.00128 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46771 * 275.01084 * 3 2 1 31 31 H 1.08994 * 109.47586 * 35.01724 * 3 2 1 32 32 H 1.09004 * 109.46817 * 155.01470 * 3 2 1 33 33 H 1.09001 * 109.47353 * 23.43684 * 4 2 1 34 34 H 1.09001 * 109.46997 * 143.43298 * 4 2 1 35 35 H 1.09006 * 109.46368 * 305.85521 * 6 5 4 36 36 H 1.09000 * 109.46216 * 65.82677 * 6 5 4 37 37 H 1.09005 * 109.50489 * 180.88382 * 7 6 5 38 38 H 1.08992 * 109.50526 * 60.76172 * 7 6 5 39 39 H 1.09001 * 109.52181 * 297.75522 * 8 7 6 40 40 H 0.97003 * 120.00394 * 265.31521 * 9 8 7 41 41 H 1.08998 * 109.58732 * 353.42182 * 13 12 10 42 42 H 1.09008 * 109.58237 * 113.84418 * 13 12 10 43 43 H 1.08990 * 109.56800 * 185.55572 * 14 13 12 44 44 H 1.08999 * 109.38526 * 65.51244 * 14 13 12 45 45 H 1.08993 * 109.46153 * 301.21789 * 15 14 13 46 46 H 0.97004 * 120.00020 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.49429 * 178.68665 * 24 15 14 48 48 H 1.08994 * 109.52455 * 58.60350 * 24 15 14 49 49 H 1.09001 * 109.58643 * 246.15548 * 25 12 10 50 50 H 1.08996 * 109.58393 * 6.43476 * 25 12 10 51 51 H 1.09000 * 109.50363 * 182.40972 * 26 8 7 52 52 H 1.08996 * 109.50776 * 62.28131 * 26 8 7 53 53 H 1.09001 * 109.46078 * 294.16786 * 27 5 4 54 54 H 1.08997 * 109.46761 * 54.14388 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4455 -1.6494 1.3766 6 6 1.2830 -1.6037 2.2725 7 6 1.7409 -1.8236 3.7162 8 6 2.4386 -3.1824 3.8238 9 7 2.9306 -3.3732 5.1903 10 6 2.1119 -3.8713 6.1380 11 8 0.9411 -4.0777 5.8826 12 7 2.5907 -4.1405 7.3687 13 6 1.7395 -4.7835 8.3790 14 6 1.7450 -3.9335 9.6483 15 6 3.1894 -3.7018 10.0981 16 6 3.1956 -2.8893 11.3673 17 1 3.6925 -1.9309 11.3925 18 6 2.5666 -3.3696 12.4964 19 7 1.9618 -4.5371 12.4658 20 14 2.5748 -2.3629 14.0698 21 1 3.3175 -1.0970 13.8436 22 1 1.1777 -2.0526 14.4661 23 1 3.2352 -3.1385 15.1502 24 6 3.9508 -2.9470 9.0058 25 6 3.9720 -3.7909 7.7275 26 6 3.6162 -3.2214 2.8459 27 6 3.1039 -2.9609 1.4274 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 2.1673 1.6647 -1.0237 31 1 1.5162 2.0406 0.5896 32 1 3.0518 1.1541 0.4341 33 1 1.4287 -2.0914 -0.4078 34 1 2.9600 -1.2072 -0.6117 35 1 0.7984 -0.6308 2.1895 36 1 0.5775 -2.3859 1.9921 37 1 0.8758 -1.8053 4.3792 38 1 2.4358 -1.0341 4.0018 39 1 1.7327 -3.9750 3.5757 40 1 3.8457 -3.1412 5.4132 41 1 0.7207 -4.8652 8.0001 42 1 2.1280 -5.7764 8.6057 43 1 1.1972 -4.4504 10.4361 44 1 1.2695 -2.9744 9.4435 45 1 3.6718 -4.6622 10.2794 46 1 1.5196 -4.8752 13.2602 47 1 4.9728 -2.7619 9.3365 48 1 3.4551 -1.9970 8.8065 49 1 4.5462 -4.7012 7.9001 50 1 4.4265 -3.2201 6.9178 51 1 4.0910 -4.2017 2.8869 52 1 4.3407 -2.4538 3.1177 53 1 2.3899 -3.7367 1.1511 54 1 3.9420 -2.9739 0.7306 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542846192.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:29 Heat of formation + Delta-G solvation = -31.827168 kcal Electronic energy + Delta-G solvation = -29828.316761 eV Core-core repulsion = 25992.149086 eV Total energy + Delta-G solvation = -3836.167675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.54206 -40.19651 -38.56298 -37.11516 -35.46783 -35.08176 -33.05985 -32.25910 -31.82193 -31.22750 -28.15251 -28.05133 -27.00715 -24.86547 -24.15931 -24.06778 -23.31770 -21.65530 -21.12942 -20.20331 -19.34415 -19.06764 -18.30881 -17.57779 -16.90347 -16.53845 -16.40910 -16.14518 -15.77442 -15.67383 -15.28633 -15.11820 -14.91000 -14.78809 -14.62836 -14.43420 -14.24761 -14.02106 -13.84461 -13.75044 -13.41184 -13.15742 -13.02093 -12.86206 -12.78322 -12.46808 -12.44367 -12.31528 -12.18890 -12.15251 -11.98083 -11.92099 -11.64974 -11.50622 -11.43078 -11.25546 -10.91627 -10.78317 -10.40929 -10.18716 -9.96402 -9.37344 -9.26478 -8.07271 -6.20962 1.24277 1.39889 1.42847 1.52843 1.70613 2.16189 2.43985 2.94466 3.03801 3.19330 3.71989 3.80532 3.95135 3.99267 4.06451 4.13904 4.24499 4.25016 4.34452 4.38632 4.46453 4.50991 4.54413 4.60717 4.66137 4.68387 4.70314 4.75098 4.82572 4.90783 4.91153 4.91508 4.95070 4.98808 5.04979 5.07661 5.16970 5.20238 5.20929 5.23775 5.28673 5.47705 5.51882 5.61082 5.67304 5.68352 5.87834 5.98846 6.07939 6.12608 6.12932 6.13957 6.39168 6.90794 7.03669 7.47063 7.59583 8.96306 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.002136 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.789659 B =13106.061491 C =13520.226176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.113 4.113 4 C 0.088 3.912 5 N -0.534 5.534 6 C 0.065 3.935 7 C -0.121 4.121 8 C 0.164 3.836 9 N -0.729 5.729 10 C 0.702 3.298 11 O -0.640 6.640 12 N -0.622 5.622 13 C 0.139 3.861 14 C -0.112 4.112 15 C 0.045 3.955 16 C -0.530 4.530 17 H 0.052 0.948 18 C 0.011 3.989 19 N -0.915 5.915 20 Si 0.950 3.050 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.280 1.280 24 C -0.116 4.116 25 C 0.118 3.882 26 C -0.112 4.112 27 C 0.060 3.940 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.023 0.977 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.408 0.592 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.018 0.982 45 H 0.005 0.995 46 H 0.260 0.740 47 H 0.075 0.925 48 H 0.043 0.957 49 H 0.076 0.924 50 H 0.101 0.899 51 H 0.088 0.912 52 H 0.088 0.912 53 H 0.032 0.968 54 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 5.968 -27.216 28.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.124 4.124 3 C -0.170 4.170 4 C -0.039 4.039 5 N -0.259 5.259 6 C -0.064 4.064 7 C -0.160 4.160 8 C 0.059 3.941 9 N -0.386 5.386 10 C 0.403 3.597 11 O -0.522 6.522 12 N -0.358 5.358 13 C 0.016 3.984 14 C -0.150 4.150 15 C 0.027 3.973 16 C -0.568 4.568 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.555 5.555 20 Si 0.777 3.223 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.206 1.206 24 C -0.154 4.154 25 C -0.004 4.004 26 C -0.150 4.150 27 C -0.068 4.068 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.042 0.958 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.247 0.753 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.036 0.964 45 H 0.024 0.976 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.095 0.905 50 H 0.119 0.881 51 H 0.106 0.894 52 H 0.107 0.893 53 H 0.050 0.950 54 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.940 6.017 -27.126 28.221 hybrid contribution -0.921 -0.203 1.374 1.667 sum 4.019 5.815 -25.752 26.704 Atomic orbital electron populations 1.23853 0.95539 1.02184 1.02160 1.21798 0.95171 0.96254 0.99170 1.20791 1.00346 0.93523 1.02292 1.21203 0.99660 0.93608 0.89431 1.62014 1.26730 1.29789 1.07367 1.21992 0.91658 1.01205 0.91528 1.21905 1.00207 0.97719 0.96163 1.20879 0.96699 0.96525 0.79978 1.45230 1.15333 1.68990 1.09063 1.16055 0.84534 0.78123 0.80961 1.90833 1.17332 1.62572 1.81483 1.47405 1.14537 1.63200 1.10699 1.21309 0.94180 0.95320 0.87585 1.21701 1.00888 0.97295 0.95163 1.18606 0.91647 0.94724 0.92336 1.21615 1.33898 1.04773 0.96553 0.92942 1.25723 0.95194 0.96008 1.01795 1.69988 1.36476 1.19490 1.29573 0.85620 0.77542 0.79148 0.80022 1.19171 1.21151 1.20571 1.21869 1.00751 0.98022 0.94799 1.21808 0.81205 0.99789 0.97578 1.21817 0.96455 1.03687 0.93049 1.22089 0.99125 0.88533 0.97018 0.89025 0.87637 0.90616 0.92126 0.91454 0.94468 0.88579 0.90014 0.95843 0.93911 0.90763 0.92379 0.75317 0.91725 0.92074 0.90941 0.96359 0.97649 0.93091 0.90682 0.93848 0.90543 0.88057 0.89398 0.89341 0.94956 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.79 12.42 67.78 0.84 -1.95 16 2 C -0.12 -1.69 4.37 -16.49 -0.07 -1.76 16 3 C -0.11 -1.32 10.02 71.24 0.71 -0.60 16 4 C 0.09 1.15 5.28 85.56 0.45 1.61 16 5 N -0.53 -8.35 4.76 -900.93 -4.28 -12.63 16 6 C 0.06 1.28 4.90 86.33 0.42 1.70 16 7 C -0.12 -2.84 5.67 30.65 0.17 -2.67 16 8 C 0.16 3.72 2.48 45.08 0.11 3.83 16 9 N -0.73 -18.54 4.99 -457.44 -2.28 -20.82 16 10 C 0.70 25.00 8.26 179.06 1.48 26.48 16 11 O -0.64 -28.04 15.47 -4.02 -0.06 -28.10 16 12 N -0.62 -22.36 2.98 -837.72 -2.49 -24.86 16 13 C 0.14 5.83 6.41 86.22 0.55 6.38 16 14 C -0.11 -5.42 5.14 30.53 0.16 -5.26 16 15 C 0.05 2.19 2.07 -11.51 -0.02 2.17 16 16 C -0.53 -28.65 8.56 25.60 0.22 -28.43 16 17 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 18 C 0.01 0.62 5.30 84.66 0.45 1.07 16 19 N -0.92 -52.42 11.31 21.45 0.24 -52.18 16 20 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 C -0.12 -4.35 5.30 30.67 0.16 -4.18 16 25 C 0.12 3.51 6.39 86.36 0.55 4.06 16 26 C -0.11 -1.62 5.57 30.65 0.17 -1.44 16 27 C 0.06 0.80 5.46 86.33 0.47 1.27 16 28 H 0.09 1.32 7.98 -2.91 -0.02 1.30 16 29 H 0.11 1.32 8.05 -2.91 -0.02 1.29 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 32 H 0.07 0.83 8.09 -2.38 -0.02 0.81 16 33 H 0.04 0.50 7.96 -2.39 -0.02 0.48 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.63 5.88 -2.38 -0.01 1.62 16 36 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.06 1.61 7.65 -2.39 -0.02 1.59 16 40 H 0.41 8.02 6.09 -92.71 -0.56 7.45 16 41 H 0.06 2.84 6.99 -2.39 -0.02 2.82 16 42 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 43 H 0.07 3.96 6.03 -2.39 -0.01 3.95 16 44 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 47 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 48 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.10 2.16 5.64 -2.39 -0.01 2.14 16 51 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 54 H 0.10 0.94 8.12 -2.39 -0.02 0.92 16 Total: -1.00 -67.37 410.60 0.27 -67.10 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.29 Total: 23.66 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 6.83 Total: 2.27 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -8.82 Total: -110.49 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.06 Total: -28.10 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -67.37 0.27 -67.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542846192.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.274 kcal (2) G-P(sol) polarization free energy of solvation -67.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds