Wall clock time and date at job start Tue Mar 31 2020 19:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 110.41678 * 2 1 4 4 C 1.54903 * 110.37004 * 122.31155 * 2 1 3 5 5 C 1.55145 * 101.65303 * 155.90171 * 4 2 1 6 6 H 1.09001 * 110.70817 * 82.72447 * 5 4 2 7 7 N 1.46494 * 110.70582 * 205.96338 * 5 4 2 8 8 C 1.34778 * 119.99625 * 200.04561 * 7 5 4 9 9 O 1.21591 * 120.00466 * 355.02295 * 8 7 5 10 10 N 1.34782 * 119.99623 * 175.01508 * 8 7 5 11 11 C 1.46926 * 120.63169 * 4.94537 * 10 8 7 12 12 C 1.53622 * 108.54081 * 126.37131 * 11 10 8 13 13 C 1.53040 * 109.24750 * 54.85373 * 12 11 10 14 14 C 1.52993 * 109.46055 * 178.48933 * 13 12 11 15 15 C 1.50704 * 109.47409 * 295.07050 * 14 13 12 16 16 H 1.08000 * 119.99589 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99963 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00097 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99919 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47234 * 59.99062 * 19 17 15 21 21 H 1.48500 * 109.47095 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46700 * 299.99143 * 19 17 15 23 23 C 1.53038 * 109.53839 * 298.51506 * 13 12 11 24 24 C 1.46930 * 120.62812 * 185.22895 * 10 8 7 25 25 C 1.54319 * 103.01618 * 324.34655 * 5 4 2 26 26 N 1.47446 * 107.23501 * 22.28157 * 25 5 4 27 27 C 1.46903 * 111.00103 * 123.25697 * 26 25 5 28 28 C 1.52998 * 117.49525 * 128.49826 * 27 26 25 29 29 C 1.53001 * 117.49561 * 59.87635 * 27 26 25 30 30 H 1.09002 * 109.46669 * 182.31687 * 1 2 3 31 31 H 1.09003 * 109.47020 * 302.31561 * 1 2 3 32 32 H 1.08998 * 109.46564 * 62.31302 * 1 2 3 33 33 H 1.08997 * 110.99617 * 37.80703 * 4 2 1 34 34 H 1.09008 * 110.99174 * 273.98856 * 4 2 1 35 35 H 0.96998 * 120.00288 * 20.05209 * 7 5 4 36 36 H 1.09006 * 109.58473 * 246.20355 * 11 10 8 37 37 H 1.08997 * 109.58475 * 6.62715 * 11 10 8 38 38 H 1.09008 * 109.63261 * 294.86413 * 12 11 10 39 39 H 1.08997 * 109.42848 * 174.72681 * 12 11 10 40 40 H 1.08998 * 109.45411 * 58.53045 * 13 12 11 41 41 H 1.08997 * 109.47590 * 55.07294 * 14 13 12 42 42 H 1.08999 * 109.46910 * 175.06734 * 14 13 12 43 43 H 0.97003 * 119.99725 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.49856 * 301.40957 * 23 13 12 45 45 H 1.08996 * 109.52646 * 181.33193 * 23 13 12 46 46 H 1.09004 * 109.58640 * 353.36749 * 24 10 8 47 47 H 1.08992 * 109.59116 * 113.65387 * 24 10 8 48 48 H 1.09000 * 109.88630 * 262.88194 * 25 5 4 49 49 H 1.08997 * 109.89246 * 141.68682 * 25 5 4 50 50 H 1.08993 * 115.55321 * 274.20646 * 27 26 25 51 51 H 1.09004 * 117.50136 * 359.97438 * 28 27 26 52 52 H 1.09003 * 117.49708 * 145.02862 * 28 27 26 53 53 H 1.08993 * 117.50094 * 214.98116 * 29 27 26 54 54 H 1.09003 * 117.49720 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7762 1.2273 5 6 3.4787 -1.1995 0.7359 6 1 4.1942 -0.3888 0.8730 7 7 3.9266 -2.4103 1.4284 8 6 5.2380 -2.7194 1.4651 9 8 6.0393 -2.0442 0.8483 10 7 5.6611 -3.7768 2.1858 11 6 4.6966 -4.6654 2.8482 12 6 4.9854 -6.1104 2.4139 13 6 6.4502 -6.4423 2.7080 14 6 6.7336 -7.8927 2.3120 15 6 5.9296 -8.8189 3.1877 16 1 5.2817 -8.4135 3.9508 17 6 6.0221 -10.1837 3.0155 18 7 6.8115 -10.6773 2.0866 19 14 5.0250 -11.3317 4.1006 20 1 3.5783 -11.0452 3.9266 21 1 5.3002 -12.7394 3.7162 22 1 5.4036 -11.1230 5.5213 23 6 7.3579 -5.5078 1.9051 24 6 7.0958 -4.0592 2.3291 25 6 3.2536 -1.4807 -0.7647 26 7 2.0448 -0.7409 -1.1713 27 6 2.3358 0.1717 -2.2851 28 6 1.4316 0.0937 -3.5169 29 6 2.8628 -0.4435 -3.5831 30 1 -0.3633 -1.0269 0.0415 31 1 -0.3633 0.5494 0.8685 32 1 -0.3632 0.4775 -0.9100 33 1 1.4515 -1.6487 1.4398 34 1 2.1388 -0.1270 2.1002 35 1 3.2795 -2.9895 1.8603 36 1 4.8021 -4.5780 3.9296 37 1 3.6839 -4.3895 2.5543 38 1 4.7958 -6.2166 1.3457 39 1 4.3397 -6.7915 2.9680 40 1 6.6453 -6.3120 3.7724 41 1 6.4551 -8.0457 1.2693 42 1 7.7955 -8.1031 2.4390 43 1 6.8763 -11.6375 1.9652 44 1 7.1459 -5.6197 0.8417 45 1 8.4009 -5.7599 2.0965 46 1 7.6667 -3.3832 1.6924 47 1 7.3935 -3.9209 3.3684 48 1 3.1056 -2.5489 -0.9236 49 1 4.1119 -1.1334 -1.3398 50 1 2.7174 1.1525 -2.0018 51 1 0.6211 -0.6350 -3.5010 52 1 1.2183 1.0235 -4.0442 53 1 3.5908 0.1328 -4.1539 54 1 2.9931 -1.5253 -3.6107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566852238.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:29 Heat of formation + Delta-G solvation = -24.676170 kcal Electronic energy + Delta-G solvation = -29751.557535 eV Core-core repulsion = 25915.699951 eV Total energy + Delta-G solvation = -3835.857584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.63271 -40.41325 -38.79979 -37.25126 -35.70934 -35.15499 -33.89500 -32.11710 -31.76545 -30.37048 -29.42433 -26.61259 -26.24940 -24.23329 -23.88961 -23.26377 -22.73771 -21.84438 -21.58982 -20.77932 -20.37359 -19.07034 -18.38597 -17.67571 -17.49811 -16.56049 -16.53750 -16.34176 -15.88618 -15.40749 -15.33659 -15.14455 -14.84536 -14.67147 -14.49136 -14.40284 -14.20989 -13.88675 -13.60200 -13.46704 -13.35071 -13.09615 -12.94151 -12.76026 -12.68007 -12.47901 -12.47478 -12.33668 -12.31357 -12.17891 -12.04260 -11.76451 -11.71430 -11.41036 -11.28116 -11.24504 -11.02783 -10.96776 -10.83575 -10.50386 -10.29085 -9.52206 -9.27124 -8.14856 -6.24715 1.42664 1.45127 1.52539 1.61741 2.09259 2.43988 2.66668 2.90587 2.93523 3.18792 3.55720 3.63973 3.90360 3.96305 3.99359 4.02080 4.07345 4.09023 4.19034 4.21473 4.27834 4.32562 4.42058 4.46629 4.53415 4.63066 4.68044 4.77131 4.79896 4.82065 4.83511 4.90423 4.95055 4.97043 4.98517 5.02257 5.07079 5.10835 5.17575 5.28567 5.32272 5.33816 5.39736 5.45567 5.53040 5.56347 5.61520 5.82607 5.89534 5.91063 5.99777 6.16634 6.30078 6.92215 6.93930 7.44127 7.52840 8.96983 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.002253 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.565575 B =12424.070153 C =12779.814101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.072 3.928 3 H 0.063 0.937 4 C -0.120 4.120 5 C 0.147 3.853 6 H 0.077 0.923 7 N -0.725 5.725 8 C 0.704 3.296 9 O -0.634 6.634 10 N -0.624 5.624 11 C 0.119 3.881 12 C -0.113 4.113 13 C -0.072 4.072 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.069 0.931 17 C -0.006 4.006 18 N -0.939 5.939 19 Si 0.961 3.039 20 H -0.264 1.264 21 H -0.291 1.291 22 H -0.266 1.266 23 C -0.122 4.122 24 C 0.138 3.862 25 C 0.042 3.958 26 N -0.501 5.501 27 C -0.010 4.010 28 C -0.148 4.148 29 C -0.183 4.183 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.409 0.591 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.066 0.934 41 H -0.019 1.019 42 H -0.015 1.015 43 H 0.260 0.740 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.064 0.936 49 H 0.044 0.956 50 H 0.094 0.906 51 H 0.095 0.905 52 H 0.111 0.889 53 H 0.103 0.897 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.023 25.147 -2.219 28.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.036 4.036 3 H 0.081 0.919 4 C -0.159 4.159 5 C 0.040 3.960 6 H 0.095 0.905 7 N -0.382 5.382 8 C 0.405 3.595 9 O -0.516 6.516 10 N -0.360 5.360 11 C -0.003 4.003 12 C -0.151 4.151 13 C -0.090 4.090 14 C -0.005 4.005 15 C -0.563 4.563 16 H 0.087 0.913 17 C -0.203 4.203 18 N -0.580 5.580 19 Si 0.786 3.214 20 H -0.189 1.189 21 H -0.217 1.217 22 H -0.191 1.191 23 C -0.160 4.160 24 C 0.015 3.985 25 C -0.088 4.088 26 N -0.226 5.226 27 C -0.119 4.119 28 C -0.186 4.186 29 C -0.220 4.220 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.249 0.751 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.000 1.000 42 H 0.003 0.997 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.082 0.918 49 H 0.063 0.937 50 H 0.112 0.888 51 H 0.113 0.887 52 H 0.129 0.871 53 H 0.122 0.878 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.777 25.135 -2.882 28.808 hybrid contribution 0.622 -1.127 0.295 1.321 sum -13.155 24.008 -2.587 27.498 Atomic orbital electron populations 1.21639 0.92364 1.02338 1.02162 1.22623 0.97179 0.95958 0.87867 0.91887 1.23068 0.92821 1.01676 0.98312 1.21983 0.96684 0.86245 0.91075 0.90522 1.45122 1.05513 1.27769 1.59838 1.16015 0.83186 0.80929 0.79327 1.90857 1.55047 1.55459 1.50274 1.47379 1.07959 1.27537 1.53166 1.21910 0.92024 0.88361 0.98052 1.21852 0.96972 0.95759 1.00510 1.21021 0.94810 0.94245 0.98970 1.19020 0.94689 0.92141 0.94637 1.21644 1.25390 0.91536 1.17777 0.91254 1.26001 0.96774 1.00573 0.96909 1.70120 1.40116 1.12855 1.34884 0.85554 0.79384 0.77209 0.79227 1.18905 1.21664 1.19071 1.21921 1.00220 0.94616 0.99286 1.21428 0.79835 0.95374 1.01913 1.23069 0.91338 0.98998 0.95347 1.63369 1.27186 1.25241 1.06777 1.22735 1.05759 0.96164 0.87269 1.23069 0.93337 1.03285 0.98864 1.23045 0.98489 1.00833 0.99681 0.92506 0.90685 0.92634 0.88892 0.88203 0.75137 0.89357 0.88459 0.94068 0.90448 0.91563 1.00039 0.99653 0.93109 0.94043 0.91030 0.90369 0.89918 0.91763 0.93741 0.88809 0.88690 0.87106 0.87849 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.59 71.99 0.69 -0.69 16 2 C 0.07 0.96 3.05 45.39 0.14 1.10 16 3 H 0.06 0.81 7.57 -2.39 -0.02 0.79 16 4 C -0.12 -1.51 6.10 31.98 0.20 -1.31 16 5 C 0.15 2.87 3.19 46.18 0.15 3.02 16 6 H 0.08 1.77 7.78 -2.39 -0.02 1.75 16 7 N -0.72 -15.48 5.04 -452.17 -2.28 -17.76 16 8 C 0.70 20.65 8.29 179.05 1.48 22.13 16 9 O -0.63 -23.50 15.54 -4.00 -0.06 -23.56 16 10 N -0.62 -17.34 2.97 -836.04 -2.48 -19.82 16 11 C 0.12 2.81 6.42 86.51 0.56 3.37 16 12 C -0.11 -3.70 5.21 30.82 0.16 -3.54 16 13 C -0.07 -2.75 2.10 -10.77 -0.02 -2.77 16 14 C 0.03 1.65 4.45 29.85 0.13 1.79 16 15 C -0.53 -28.44 8.39 25.60 0.21 -28.23 16 16 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 17 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 18 N -0.94 -57.25 13.29 21.45 0.28 -56.96 16 19 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 23 C -0.12 -4.19 5.36 30.67 0.16 -4.03 16 24 C 0.14 4.03 6.44 86.36 0.56 4.58 16 25 C 0.04 0.91 6.31 86.65 0.55 1.46 16 26 N -0.50 -8.97 4.98 -835.64 -4.16 -13.13 16 27 C -0.01 -0.17 5.00 44.91 0.22 0.05 16 28 C -0.15 -2.09 10.46 30.59 0.32 -1.77 16 29 C -0.18 -3.10 9.64 30.60 0.30 -2.81 16 30 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 1.04 7.91 -2.39 -0.02 1.02 16 34 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.41 6.73 6.00 -92.71 -0.56 6.17 16 36 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.10 1.71 5.64 -2.39 -0.01 1.70 16 38 H 0.04 1.48 8.14 -2.38 -0.02 1.47 16 39 H 0.08 2.65 6.91 -2.39 -0.02 2.64 16 40 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 41 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 42 H -0.01 -0.85 8.14 -2.39 -0.02 -0.86 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.08 2.45 7.00 -2.38 -0.02 2.43 16 47 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.06 1.61 8.03 -2.39 -0.02 1.60 16 49 H 0.04 1.15 7.23 -2.39 -0.02 1.13 16 50 H 0.09 1.45 7.75 -2.39 -0.02 1.43 16 51 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 54 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 Total: -1.00 -70.40 415.55 -0.10 -70.50 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.31 Total: 22.98 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 6.27 Total: -7.51 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -8.63 Total: -107.68 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.06 Total: -23.56 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -70.40 -0.10 -70.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566852238.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.823 kcal (2) G-P(sol) polarization free energy of solvation -70.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds