Wall clock time and date at job start Tue Mar 31 2020 18:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00197 * 2 1 4 4 C 1.50690 * 109.47034 * 66.04799 * 3 2 1 5 5 H 1.08000 * 120.00018 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00040 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99906 * 179.97438 * 6 4 3 8 8 Si 1.86793 * 119.99802 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47063 * 90.00270 * 8 6 4 10 10 H 1.48501 * 109.47433 * 209.99985 * 8 6 4 11 11 H 1.48499 * 109.47517 * 330.00293 * 8 6 4 12 12 C 1.46908 * 111.00202 * 236.04603 * 2 1 3 13 13 C 1.53002 * 109.46893 * 293.95468 * 12 2 1 14 14 H 1.09001 * 109.47014 * 59.99670 * 13 12 2 15 15 O 1.42896 * 109.47509 * 300.00021 * 13 12 2 16 16 C 1.53001 * 109.47097 * 179.97438 * 13 12 2 17 17 N 1.46905 * 109.46941 * 185.00281 * 16 13 12 18 18 C 1.46898 * 110.99536 * 180.02562 * 17 16 13 19 19 C 1.50705 * 109.46986 * 179.97438 * 18 17 16 20 20 C 1.38230 * 120.41577 * 266.08958 * 19 18 17 21 21 N 1.31852 * 120.75802 * 179.73246 * 20 19 18 22 22 C 1.31887 * 121.73067 * 0.57077 * 21 20 19 23 23 C 1.38180 * 120.76167 * 359.69448 * 22 21 20 24 24 C 1.38619 * 120.41959 * 86.36207 * 19 18 17 25 25 C 1.50698 * 120.79080 * 0.02562 * 24 19 18 26 26 C 1.53003 * 109.47146 * 188.71367 * 25 24 19 27 27 C 1.53000 * 109.46957 * 308.70764 * 25 24 19 28 28 C 1.52997 * 109.47371 * 68.71222 * 25 24 19 29 29 H 1.08996 * 109.46960 * 60.00105 * 1 2 3 30 30 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46961 * 300.00069 * 1 2 3 32 32 H 1.08999 * 109.46802 * 186.04839 * 3 2 1 33 33 H 1.09000 * 109.47038 * 306.04153 * 3 2 1 34 34 H 0.97005 * 119.99822 * 180.02562 * 7 6 4 35 35 H 1.08992 * 109.46820 * 53.95132 * 12 2 1 36 36 H 1.08998 * 109.47098 * 173.95686 * 12 2 1 37 37 H 0.96705 * 113.99884 * 299.99903 * 15 13 12 38 38 H 1.08998 * 109.46970 * 304.99924 * 16 13 12 39 39 H 1.08998 * 109.46772 * 65.00249 * 16 13 12 40 40 H 1.00902 * 110.99645 * 303.95300 * 17 16 13 41 41 H 1.08998 * 109.46987 * 299.99494 * 18 17 16 42 42 H 1.08999 * 109.47130 * 59.99901 * 18 17 16 43 43 H 1.08005 * 119.61928 * 0.02562 * 20 19 18 44 44 H 1.07994 * 119.61659 * 179.70547 * 22 21 20 45 45 H 1.07994 * 120.41691 * 180.02562 * 23 22 21 46 46 H 1.09004 * 109.47414 * 59.99377 * 26 25 24 47 47 H 1.09004 * 109.47345 * 179.97438 * 26 25 24 48 48 H 1.09004 * 109.46771 * 299.99573 * 26 25 24 49 49 H 1.08998 * 109.46665 * 79.05652 * 27 25 24 50 50 H 1.09000 * 109.47081 * 199.05116 * 27 25 24 51 51 H 1.08995 * 109.47150 * 319.05570 * 27 25 24 52 52 H 1.09001 * 109.47344 * 67.87657 * 28 25 24 53 53 H 1.08999 * 109.47273 * 187.88202 * 28 25 24 54 54 H 1.09003 * 109.46940 * 307.87786 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0740 1.5114 2.0484 6 6 2.0269 3.3494 1.5285 7 7 1.7137 3.9392 2.6614 8 14 3.0001 4.2760 0.2309 9 1 2.0634 4.9797 -0.6816 10 1 3.8865 5.2678 0.8912 11 1 3.8240 3.3174 -0.5485 12 6 1.9955 -0.7660 -1.1376 13 6 1.6315 -2.2427 -0.9703 14 1 0.5472 -2.3475 -0.9323 15 8 2.2008 -2.7392 0.2426 16 6 2.1793 -3.0404 -2.1555 17 7 1.7287 -4.4352 -2.0570 18 6 2.2372 -5.2331 -3.1806 19 6 1.7561 -6.6549 -3.0455 20 6 2.5434 -7.6037 -2.4204 21 7 2.1269 -8.8483 -2.2938 22 6 0.9581 -9.2397 -2.7631 23 6 0.1195 -8.3482 -3.4044 24 6 0.5208 -7.0289 -3.5513 25 6 -0.3643 -6.0260 -4.2453 26 6 -1.7373 -6.6501 -4.5034 27 6 -0.5249 -4.7887 -3.3598 28 6 0.2703 -5.6212 -5.5772 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.0797 1.3443 -0.1083 33 1 1.5612 1.9273 -0.8310 34 1 1.9877 4.8556 2.8231 35 1 1.5611 -0.3873 -2.0627 36 1 3.0798 -0.6611 -1.1756 37 1 3.1652 -2.6772 0.2787 38 1 1.8143 -2.6055 -3.0859 39 1 3.2687 -3.0087 -2.1422 40 1 1.9994 -4.8411 -1.1738 41 1 1.8731 -4.8136 -4.1184 42 1 3.3271 -5.2166 -3.1741 43 1 3.5088 -7.3212 -2.0271 44 1 0.6530 -10.2688 -2.6446 45 1 -0.8366 -8.6746 -3.7861 46 1 -2.1895 -6.9386 -3.5544 47 1 -2.3777 -5.9245 -5.0050 48 1 -1.6229 -7.5316 -5.1342 49 1 0.3620 -4.1613 -3.4480 50 1 -1.4018 -4.2251 -3.6786 51 1 -0.6494 -5.0982 -2.3222 52 1 0.2570 -6.4712 -6.2594 53 1 -0.2941 -4.7967 -6.0130 54 1 1.3003 -5.3070 -5.4083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578640906.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:25 Heat of formation + Delta-G solvation = -22.226931 kcal Electronic energy + Delta-G solvation = -29763.832677 eV Core-core repulsion = 25928.081300 eV Total energy + Delta-G solvation = -3835.751377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.73396 -39.61987 -38.24630 -37.39163 -36.14355 -34.59113 -32.93215 -32.10285 -31.07392 -29.51143 -28.50410 -27.96523 -27.64472 -26.19275 -24.60169 -24.32608 -22.65772 -22.42735 -21.67861 -20.52117 -19.02194 -17.79894 -17.59705 -17.21903 -17.10578 -16.63728 -16.24528 -15.99802 -15.90651 -15.84030 -15.35222 -15.17636 -14.92803 -14.73952 -14.65799 -14.51373 -14.20341 -14.09356 -13.82298 -13.46989 -13.34785 -13.11857 -13.00117 -12.81551 -12.72491 -12.57817 -12.46528 -12.33543 -12.30363 -12.25927 -11.90788 -11.81407 -11.79935 -11.56293 -11.49341 -11.21794 -10.79153 -10.75976 -10.33775 -10.26662 -9.95454 -9.22459 -8.94956 -8.27507 -6.31149 0.18415 0.37299 1.34305 1.36536 1.47309 2.34707 2.76526 3.03672 3.07646 3.45951 3.55946 3.62620 3.74496 3.77153 3.92748 3.99128 4.08297 4.18075 4.18745 4.29072 4.29493 4.34007 4.44780 4.52534 4.55766 4.59092 4.66758 4.70856 4.78077 4.81099 4.83307 4.85040 4.91177 4.92153 4.96518 5.02956 5.03032 5.14175 5.15316 5.20861 5.23209 5.29156 5.39936 5.48442 5.54217 5.57293 5.77947 5.83338 5.97782 6.03570 6.37211 6.43002 6.68493 6.75836 7.01166 7.06838 7.32335 8.89454 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.002149 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.513822 B =13028.281622 C =13441.803436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.540 5.540 3 C 0.172 3.828 4 C -0.516 4.516 5 H 0.033 0.967 6 C 0.003 3.997 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.246 1.246 12 C 0.021 3.979 13 C 0.125 3.875 14 H 0.091 0.909 15 O -0.564 6.564 16 C 0.037 3.963 17 N -0.673 5.673 18 C 0.092 3.908 19 C -0.134 4.134 20 C 0.092 3.908 21 N -0.518 5.518 22 C 0.086 3.914 23 C -0.179 4.179 24 C -0.012 4.012 25 C -0.029 4.029 26 C -0.144 4.144 27 C -0.134 4.134 28 C -0.144 4.144 29 H 0.020 0.980 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.031 0.969 33 H -0.014 1.014 34 H 0.266 0.734 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.379 0.621 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.343 0.657 41 H 0.103 0.897 42 H 0.048 0.952 43 H 0.160 0.840 44 H 0.172 0.828 45 H 0.155 0.845 46 H 0.053 0.947 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.091 0.909 50 H 0.043 0.957 51 H 0.042 0.958 52 H 0.058 0.942 53 H 0.069 0.931 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 -25.094 -21.671 33.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.263 5.263 3 C 0.045 3.955 4 C -0.555 4.555 5 H 0.052 0.948 6 C -0.194 4.194 7 N -0.591 5.591 8 Si 0.775 3.225 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.169 1.169 12 C -0.108 4.108 13 C 0.065 3.935 14 H 0.109 0.891 15 O -0.370 6.370 16 C -0.092 4.092 17 N -0.305 5.305 18 C -0.036 4.036 19 C -0.137 4.137 20 C -0.065 4.065 21 N -0.227 5.227 22 C -0.071 4.071 23 C -0.198 4.198 24 C -0.020 4.020 25 C -0.030 4.030 26 C -0.201 4.201 27 C -0.191 4.191 28 C -0.201 4.201 29 H 0.038 0.962 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.003 0.997 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.227 0.773 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.162 0.838 41 H 0.121 0.879 42 H 0.066 0.934 43 H 0.177 0.823 44 H 0.189 0.811 45 H 0.172 0.828 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.109 0.891 50 H 0.062 0.938 51 H 0.061 0.939 52 H 0.077 0.923 53 H 0.088 0.912 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.569 -25.764 -20.877 33.198 hybrid contribution 0.862 1.740 -0.693 2.062 sum -0.707 -24.024 -21.570 32.295 Atomic orbital electron populations 1.22170 0.87930 1.00800 0.99636 1.61728 1.07908 1.14330 1.42363 1.19955 0.95247 0.85953 0.94336 1.21288 1.34727 0.97486 1.01966 0.94844 1.25921 0.97105 0.98485 0.97856 1.70065 1.48689 1.13835 1.26507 0.85654 0.79153 0.78665 0.79057 1.19341 1.20783 1.16920 1.22889 1.00717 0.95167 0.91995 1.21818 0.98538 0.89275 0.83821 0.89072 1.86600 1.26094 1.84826 1.39475 1.22539 0.98396 0.89207 0.99108 1.60872 1.62539 1.01546 1.05546 1.21132 0.97437 0.88565 0.96464 1.20688 0.95468 0.96946 1.00559 1.22888 0.99917 0.88351 0.95334 1.67667 1.17110 1.18780 1.19158 1.23133 0.89365 1.01092 0.93487 1.22400 1.02322 0.93584 1.01529 1.20403 0.93390 0.94415 0.93836 1.19595 0.94073 0.93993 0.95293 1.21989 0.95182 1.01166 1.01730 1.22287 1.02707 0.96088 0.98047 1.22049 1.01015 1.01899 0.95099 0.96168 0.90693 0.93999 0.95096 0.99670 0.92473 0.93815 0.90453 0.77322 0.89096 0.93468 0.83842 0.87901 0.93419 0.82300 0.81091 0.82780 0.92772 0.91664 0.91544 0.89077 0.93830 0.93876 0.92323 0.91217 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.16 127.69 1.17 2.83 16 2 N -0.54 -21.78 4.62 -927.07 -4.28 -26.06 16 3 C 0.17 8.15 3.79 85.55 0.32 8.47 16 4 C -0.52 -30.21 9.07 25.60 0.23 -29.98 16 5 H 0.03 2.21 7.35 -2.91 -0.02 2.19 16 6 C 0.00 0.19 5.47 84.66 0.46 0.65 16 7 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 8 Si 0.95 43.74 27.47 68.60 1.88 45.63 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.25 -10.31 6.54 99.48 0.65 -9.66 16 12 C 0.02 0.61 4.62 86.30 0.40 1.01 16 13 C 0.13 2.93 3.08 30.60 0.09 3.03 16 14 H 0.09 2.39 6.47 -2.39 -0.02 2.38 16 15 O -0.56 -15.19 12.72 -148.98 -1.90 -17.08 16 16 C 0.04 0.59 4.93 86.30 0.43 1.01 16 17 N -0.67 -10.50 3.72 -517.92 -1.93 -12.43 16 18 C 0.09 1.22 4.58 85.56 0.39 1.61 16 19 C -0.13 -2.14 5.20 -19.77 -0.10 -2.25 16 20 C 0.09 1.65 10.85 84.69 0.92 2.57 16 21 N -0.52 -10.62 10.36 -195.84 -2.03 -12.65 16 22 C 0.09 1.40 11.18 84.67 0.95 2.35 16 23 C -0.18 -2.59 9.09 22.36 0.20 -2.39 16 24 C -0.01 -0.18 4.66 -19.67 -0.09 -0.28 16 25 C -0.03 -0.38 0.75 -52.93 -0.04 -0.42 16 26 C -0.14 -1.59 7.11 71.98 0.51 -1.08 16 27 C -0.13 -2.13 6.97 71.98 0.50 -1.63 16 28 C -0.14 -1.56 8.18 71.98 0.59 -0.97 16 29 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 2.49 6.30 -2.39 -0.02 2.48 16 31 H 0.04 1.89 6.86 -2.39 -0.02 1.88 16 32 H 0.03 1.43 6.99 -2.39 -0.02 1.42 16 33 H -0.01 -0.66 7.55 -2.39 -0.02 -0.68 16 34 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 35 H 0.04 1.16 8.12 -2.39 -0.02 1.14 16 36 H 0.08 2.09 7.93 -2.39 -0.02 2.07 16 37 H 0.38 7.99 9.05 -74.05 -0.67 7.32 16 38 H 0.09 1.28 7.72 -2.39 -0.02 1.26 16 39 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.34 6.15 8.28 -89.69 -0.74 5.41 16 41 H 0.10 1.23 3.54 -2.39 -0.01 1.23 16 42 H 0.05 0.56 8.07 -2.39 -0.02 0.54 16 43 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 44 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 45 H 0.15 1.55 6.10 -2.91 -0.02 1.54 16 46 H 0.05 0.66 7.95 -2.38 -0.02 0.64 16 47 H 0.06 0.67 8.13 -2.38 -0.02 0.65 16 48 H 0.07 0.59 7.17 -2.39 -0.02 0.57 16 49 H 0.09 1.41 3.35 -2.39 -0.01 1.40 16 50 H 0.04 0.68 7.99 -2.39 -0.02 0.66 16 51 H 0.04 0.86 7.67 -2.39 -0.02 0.84 16 52 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 53 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 54 H 0.06 0.68 5.16 -2.39 -0.01 0.67 16 Total: -1.00 -71.85 407.00 -1.58 -73.42 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -0.56 Total: 24.40 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 6.94 Total: -15.46 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -7.94 Total: -110.91 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -1.90 Total: -17.08 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.63 kcal Total: -71.85 -1.58 -73.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578640906.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.196 kcal (2) G-P(sol) polarization free energy of solvation -71.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds