Wall clock time and date at job start Tue Mar 31 2020 18:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46916 * 2 1 4 4 C 1.53008 * 109.46968 * 119.99697 * 2 1 3 5 5 H 1.09001 * 109.46734 * 306.25935 * 4 2 1 6 6 C 1.52998 * 109.47067 * 66.25874 * 4 2 1 7 7 N 1.46904 * 109.46959 * 293.15413 * 6 4 2 8 8 C 1.46904 * 110.99822 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47036 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.46739 * 59.99997 * 9 8 7 11 11 O 1.42898 * 109.47352 * 299.99923 * 9 8 7 12 12 C 1.53003 * 109.47091 * 179.97438 * 9 8 7 13 13 N 1.46891 * 109.47132 * 185.00269 * 12 9 8 14 14 C 1.46905 * 111.00183 * 66.04586 * 13 12 9 15 15 C 1.46902 * 111.00321 * 189.99744 * 13 12 9 16 16 C 1.50698 * 109.47468 * 169.99830 * 15 13 12 17 17 H 1.08002 * 119.99742 * 0.02562 * 16 15 13 18 18 C 1.37879 * 120.00029 * 180.02562 * 16 15 13 19 19 N 1.31515 * 120.00040 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99930 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47090 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47058 * 120.00017 * 20 18 16 23 23 H 1.48497 * 109.47111 * 239.99969 * 20 18 16 24 24 C 1.50699 * 109.46881 * 186.25859 * 4 2 1 25 25 C 1.38674 * 120.41470 * 120.00252 * 24 4 2 26 26 C 1.38631 * 118.41728 * 180.02562 * 25 24 4 27 27 C 1.38227 * 119.16379 * 359.97438 * 26 25 24 28 28 N 1.31860 * 120.76140 * 0.02562 * 27 26 25 29 29 C 1.31893 * 121.72557 * 359.69793 * 28 27 26 30 30 H 1.08999 * 109.47210 * 50.93173 * 1 2 3 31 31 H 1.09001 * 109.46649 * 170.92592 * 1 2 3 32 32 H 1.08996 * 109.47389 * 290.92540 * 1 2 3 33 33 H 1.08999 * 109.47324 * 239.99649 * 2 1 3 34 34 H 1.08999 * 109.47410 * 59.99702 * 3 2 1 35 35 H 1.09004 * 109.46748 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46845 * 299.99213 * 3 2 1 37 37 H 1.08995 * 109.47620 * 53.15278 * 6 4 2 38 38 H 1.08997 * 109.47243 * 173.15684 * 6 4 2 39 39 H 1.00905 * 111.00176 * 303.95020 * 7 6 4 40 40 H 1.08998 * 109.47127 * 300.00329 * 8 7 6 41 41 H 1.09003 * 109.47173 * 59.99605 * 8 7 6 42 42 H 0.96697 * 113.99798 * 300.00123 * 11 9 8 43 43 H 1.09010 * 109.46913 * 305.00403 * 12 9 8 44 44 H 1.08996 * 109.47114 * 64.99751 * 12 9 8 45 45 H 1.09002 * 109.47216 * 60.00010 * 14 13 12 46 46 H 1.09000 * 109.47384 * 180.02562 * 14 13 12 47 47 H 1.08997 * 109.47204 * 300.00165 * 14 13 12 48 48 H 1.09002 * 109.47273 * 290.00441 * 15 13 12 49 49 H 1.09006 * 109.46613 * 50.00013 * 15 13 12 50 50 H 0.96999 * 120.00226 * 179.97438 * 19 18 16 51 51 H 1.07995 * 120.79187 * 359.97085 * 25 24 4 52 52 H 1.08002 * 120.42014 * 180.02562 * 26 25 24 53 53 H 1.07999 * 119.62289 * 179.97438 * 27 26 25 54 54 H 1.07998 * 119.61799 * 180.31460 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.5880 -0.2761 2.1357 6 6 1.6625 -2.2019 1.1733 7 7 0.2025 -2.3401 1.2605 8 6 -0.1977 -3.7518 1.1912 9 6 -1.7213 -3.8552 1.2857 10 1 -2.1744 -3.3081 0.4590 11 8 -2.1608 -3.2958 2.5250 12 6 -2.1382 -5.3255 1.2129 13 7 -3.6039 -5.4180 1.1829 14 6 -4.1427 -4.8402 -0.0556 15 6 -4.0474 -6.8083 1.3516 16 6 -5.5393 -6.8378 1.5616 17 1 -6.1020 -5.9159 1.5687 18 6 -6.1861 -8.0416 1.7448 19 7 -5.5009 -9.1641 1.7368 20 14 -8.0356 -8.0782 2.0044 21 1 -8.5676 -6.6921 1.9714 22 1 -8.6709 -8.8786 0.9270 23 1 -8.3384 -8.6928 3.3218 24 6 3.5390 -0.5885 1.3292 25 6 4.1320 0.0285 2.4204 26 6 5.5144 0.1286 2.4510 27 6 6.2505 -0.3867 1.4006 28 7 5.6524 -0.9671 0.3788 29 6 4.3401 -1.0848 0.3187 30 1 -0.3633 0.6477 -0.7979 31 1 -0.3633 -1.0148 -0.1621 32 1 -0.3634 0.3670 0.9598 33 1 1.8934 -0.5139 -0.8899 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9562 -0.8900 37 1 2.0109 -2.6177 0.2279 38 1 2.1282 -2.7386 1.9998 39 1 -0.1525 -1.9047 2.0987 40 1 0.1379 -4.1787 0.2462 41 1 0.2552 -4.2989 2.0181 42 1 -1.7961 -3.7344 3.3058 43 1 -1.7272 -5.7754 0.3091 44 1 -1.7585 -5.8545 2.0870 45 1 -3.7409 -5.3800 -0.9131 46 1 -5.2296 -4.9213 -0.0516 47 1 -3.8573 -3.7903 -0.1210 48 1 -3.7946 -7.3811 0.4594 49 1 -3.5499 -7.2458 2.2173 50 1 -5.9558 -10.0110 1.8660 51 1 3.5313 0.4225 3.2267 52 1 6.0100 0.6025 3.2854 53 1 7.3278 -0.3124 1.4166 54 1 3.8862 -1.5710 -0.5322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579343430.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:43 Heat of formation + Delta-G solvation = -43.001937 kcal Electronic energy + Delta-G solvation = -29011.557625 eV Core-core repulsion = 25174.905376 eV Total energy + Delta-G solvation = -3836.652249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.38731 -39.67624 -38.54082 -37.15846 -35.23994 -34.61990 -33.44372 -32.49587 -31.34147 -29.47103 -28.64160 -27.70093 -27.11779 -25.28858 -24.64920 -23.74921 -22.76558 -22.60364 -21.75321 -20.63364 -18.57374 -18.06234 -17.47819 -17.26968 -17.13858 -16.72103 -16.48463 -16.16512 -15.87728 -15.72571 -15.31608 -15.21585 -14.97423 -14.89533 -14.56452 -14.20910 -13.94056 -13.86597 -13.70165 -13.67182 -13.31754 -13.24011 -13.09737 -12.88851 -12.74374 -12.57896 -12.50697 -12.42541 -12.34511 -12.25039 -11.99813 -11.72272 -11.61106 -11.56871 -11.38422 -11.30580 -10.73313 -10.63177 -10.62637 -10.33749 -9.81929 -9.14060 -8.95241 -8.21269 -6.31023 0.20168 0.38255 1.40729 1.41370 1.55430 2.40083 2.84520 2.97064 3.11243 3.41455 3.59357 3.69858 3.72337 3.86839 4.03739 4.06938 4.10058 4.14579 4.17935 4.26768 4.31042 4.31637 4.45676 4.54103 4.57213 4.60712 4.68941 4.72180 4.73591 4.75116 4.85691 4.89678 4.93906 4.97294 5.01449 5.07884 5.17536 5.18310 5.19849 5.23797 5.27295 5.33939 5.37990 5.42446 5.62930 5.65003 5.82218 5.90267 6.02154 6.06786 6.32759 6.48912 6.64637 6.85597 6.98512 7.06680 7.38804 8.89880 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.025591 B = 0.001800 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.860067 B =15552.960416 C =16035.724653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C -0.143 4.143 4 C -0.028 4.028 5 H 0.087 0.913 6 C 0.071 3.929 7 N -0.670 5.670 8 C 0.036 3.964 9 C 0.131 3.869 10 H 0.097 0.903 11 O -0.559 6.559 12 C 0.023 3.977 13 N -0.539 5.539 14 C 0.040 3.960 15 C 0.207 3.793 16 C -0.522 4.522 17 H 0.061 0.939 18 C 0.000 4.000 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.278 1.278 24 C -0.118 4.118 25 C -0.081 4.081 26 C -0.167 4.167 27 C 0.074 3.926 28 N -0.514 5.514 29 C 0.088 3.912 30 H 0.035 0.965 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.028 0.972 39 H 0.350 0.650 40 H 0.081 0.919 41 H 0.038 0.962 42 H 0.378 0.622 43 H 0.031 0.969 44 H 0.065 0.935 45 H 0.010 0.990 46 H 0.054 0.946 47 H 0.078 0.922 48 H -0.040 1.040 49 H 0.003 0.997 50 H 0.264 0.736 51 H 0.151 0.849 52 H 0.160 0.840 53 H 0.171 0.829 54 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.447 21.808 0.491 31.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 C -0.200 4.200 4 C -0.047 4.047 5 H 0.105 0.895 6 C -0.058 4.058 7 N -0.302 5.302 8 C -0.094 4.094 9 C 0.071 3.929 10 H 0.115 0.885 11 O -0.364 6.364 12 C -0.106 4.106 13 N -0.263 5.263 14 C -0.108 4.108 15 C 0.081 3.919 16 C -0.560 4.560 17 H 0.080 0.920 18 C -0.198 4.198 19 N -0.576 5.576 20 Si 0.795 3.205 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.203 1.203 24 C -0.121 4.121 25 C -0.106 4.106 26 C -0.186 4.186 27 C -0.082 4.082 28 N -0.223 5.223 29 C -0.069 4.069 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.169 0.831 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.226 0.774 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.029 0.971 46 H 0.073 0.927 47 H 0.097 0.903 48 H -0.022 1.022 49 H 0.021 0.979 50 H 0.073 0.927 51 H 0.169 0.831 52 H 0.178 0.822 53 H 0.188 0.812 54 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 22.333 22.073 -0.852 31.412 hybrid contribution -0.368 -1.561 1.200 2.003 sum 21.965 20.512 0.348 30.056 Atomic orbital electron populations 1.22011 0.94011 1.03924 1.00384 1.20980 0.96555 0.95131 0.96363 1.21840 0.99956 0.96429 1.01775 1.20139 0.89205 0.95358 1.00019 0.89500 1.21969 0.87728 0.95193 1.00925 1.60642 1.10638 1.13468 1.45500 1.22502 0.94855 0.90097 1.01921 1.21763 0.92503 0.90991 0.87630 0.88533 1.86574 1.74373 1.60011 1.15457 1.22853 0.88877 0.98379 1.00497 1.61946 1.08188 1.19994 1.36210 1.22233 1.00431 0.98974 0.89182 1.19396 0.95390 0.83930 0.93200 1.21511 0.93315 0.92840 1.48379 0.92034 1.25929 1.03749 0.95077 0.95068 1.70088 1.37769 0.98314 1.51409 0.85319 0.78992 0.78437 0.77781 1.18812 1.20364 1.20345 1.20825 0.96810 0.98939 0.95496 1.21849 0.95397 0.95907 0.97488 1.22446 0.94692 1.00798 1.00699 1.23176 1.01655 0.93908 0.89474 1.67682 1.12348 1.15613 1.26672 1.22724 0.88923 0.96938 0.98281 0.94549 0.89351 0.93504 0.91882 0.92504 0.93933 0.92899 0.90965 0.95410 0.83080 0.90081 0.94422 0.77428 0.95083 0.91605 0.97123 0.92749 0.90348 1.02229 0.97860 0.92697 0.83114 0.82247 0.81152 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.22 71.98 0.59 -1.75 16 2 C -0.07 -1.00 2.25 -10.79 -0.02 -1.02 16 3 C -0.14 -1.94 8.84 71.98 0.64 -1.30 16 4 C -0.03 -0.35 1.91 -11.54 -0.02 -0.37 16 5 H 0.09 1.01 7.89 -2.39 -0.02 0.99 16 6 C 0.07 1.01 4.76 86.30 0.41 1.42 16 7 N -0.67 -10.80 3.19 -513.88 -1.64 -12.44 16 8 C 0.04 0.69 5.39 86.30 0.47 1.16 16 9 C 0.13 3.34 3.19 30.60 0.10 3.44 16 10 H 0.10 2.65 6.33 -2.39 -0.02 2.63 16 11 O -0.56 -14.97 12.62 -148.98 -1.88 -16.85 16 12 C 0.02 0.77 4.60 86.31 0.40 1.17 16 13 N -0.54 -23.30 4.70 -927.03 -4.36 -27.66 16 14 C 0.04 1.57 9.14 127.69 1.17 2.73 16 15 C 0.21 11.16 4.72 85.56 0.40 11.56 16 16 C -0.52 -30.07 8.46 25.60 0.22 -29.86 16 17 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 18 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 19 N -0.94 -56.64 13.29 21.45 0.28 -56.35 16 20 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 C -0.12 -1.61 3.25 -19.77 -0.06 -1.67 16 25 C -0.08 -0.92 9.81 22.47 0.22 -0.70 16 26 C -0.17 -1.77 10.11 22.36 0.23 -1.54 16 27 C 0.07 1.03 11.18 84.69 0.95 1.98 16 28 N -0.51 -9.76 10.36 -195.84 -2.03 -11.78 16 29 C 0.09 1.47 9.95 84.67 0.84 2.31 16 30 H 0.04 0.60 8.12 -2.39 -0.02 0.58 16 31 H 0.09 1.64 5.85 -2.39 -0.01 1.63 16 32 H 0.05 0.75 8.09 -2.39 -0.02 0.73 16 33 H 0.06 0.95 7.65 -2.39 -0.02 0.93 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.04 0.63 6.98 -2.38 -0.02 0.61 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 1.08 7.64 -2.39 -0.02 1.06 16 38 H 0.03 0.42 8.13 -2.39 -0.02 0.40 16 39 H 0.35 5.64 8.12 -89.69 -0.73 4.92 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.38 8.07 9.05 -74.06 -0.67 7.40 16 43 H 0.03 1.03 8.12 -2.38 -0.02 1.01 16 44 H 0.07 2.21 7.93 -2.39 -0.02 2.19 16 45 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.05 2.33 6.76 -2.39 -0.02 2.31 16 47 H 0.08 2.58 6.37 -2.39 -0.02 2.56 16 48 H -0.04 -2.33 8.12 -2.39 -0.02 -2.35 16 49 H 0.00 0.19 7.93 -2.38 -0.02 0.17 16 50 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 51 H 0.15 1.10 8.00 -2.91 -0.02 1.08 16 52 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 53 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 54 H 0.15 2.33 7.31 -2.91 -0.02 2.30 16 Total: -1.00 -68.64 422.93 -1.15 -69.79 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -0.52 Total: 20.52 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 6.97 Total: -12.00 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -7.74 Total: -108.24 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -1.88 Total: -16.85 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -68.64 -1.15 -69.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579343430.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.790 kcal (2) G-P(sol) polarization free energy of solvation -68.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds