Wall clock time and date at job start Tue Mar 31 2020 19:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 115.56376 * 2 1 4 4 C 1.53074 * 117.49312 * 145.70119 * 2 1 3 5 5 C 1.53001 * 117.50271 * 214.30635 * 2 1 3 6 6 H 1.09000 * 117.49783 * 0.02562 * 5 2 1 7 7 N 1.46896 * 117.49838 * 145.02505 * 5 2 1 8 8 C 1.44761 * 111.00013 * 126.71441 * 7 5 2 9 9 C 1.54034 * 109.68128 * 217.85625 * 8 7 5 10 10 N 1.47778 * 111.55285 * 319.99919 * 9 8 7 11 11 C 1.34778 * 118.54500 * 138.08686 * 10 9 8 12 12 O 1.21590 * 120.00002 * 186.08308 * 11 10 9 13 13 N 1.34777 * 120.00038 * 6.09401 * 11 10 9 14 14 C 1.46497 * 120.00077 * 185.01269 * 13 11 10 15 15 C 1.52994 * 109.47268 * 175.25971 * 14 13 11 16 16 C 1.50699 * 115.55237 * 282.16996 * 15 14 13 17 17 H 1.07997 * 120.00377 * 143.78797 * 16 15 14 18 18 C 1.37878 * 119.99910 * 323.79630 * 16 15 14 19 19 N 1.31522 * 119.99892 * 338.49535 * 18 16 15 20 20 Si 1.86797 * 120.00457 * 158.50090 * 18 16 15 21 21 H 1.48503 * 109.46609 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47607 * 119.99476 * 20 18 16 23 23 H 1.48497 * 109.47170 * 239.99885 * 20 18 16 24 24 C 1.53005 * 117.49799 * 136.46482 * 15 14 13 25 25 C 1.53002 * 60.00163 * 252.50721 * 24 15 14 26 26 C 1.44681 * 122.90939 * 318.11548 * 10 9 8 27 27 C 1.54947 * 109.52495 * 89.07177 * 26 10 9 28 28 H 1.09003 * 109.42539 * 50.61006 * 27 26 10 29 29 C 1.53001 * 109.42788 * 170.44340 * 27 26 10 30 30 C 1.46262 * 110.99579 * 250.19920 * 7 5 2 31 31 H 1.08994 * 109.47111 * 205.68852 * 1 2 3 32 32 H 1.08999 * 109.47320 * 325.69586 * 1 2 3 33 33 H 1.09008 * 109.46601 * 85.69141 * 1 2 3 34 34 H 1.08997 * 117.49493 * 0.02562 * 4 2 1 35 35 H 1.09003 * 117.53267 * 214.95723 * 4 2 1 36 36 H 1.09003 * 109.43608 * 337.91916 * 8 7 5 37 37 H 1.09003 * 109.43846 * 97.78779 * 8 7 5 38 38 H 1.09002 * 109.06006 * 199.46993 * 9 8 7 39 39 H 1.08994 * 109.06439 * 80.53542 * 9 8 7 40 40 H 0.97003 * 119.99788 * 4.99802 * 13 11 10 41 41 H 1.09010 * 109.46741 * 295.26153 * 14 13 11 42 42 H 1.08999 * 109.47818 * 55.25471 * 14 13 11 43 43 H 0.97003 * 120.00033 * 185.02663 * 19 18 16 44 44 H 1.08991 * 117.50241 * 359.97438 * 24 15 14 45 45 H 1.09005 * 117.49683 * 145.02533 * 24 15 14 46 46 H 1.08999 * 117.50222 * 252.51487 * 25 24 15 47 47 H 1.09002 * 117.51609 * 107.47704 * 25 24 15 48 48 H 1.09002 * 109.45632 * 329.06059 * 26 10 9 49 49 H 1.08992 * 109.46225 * 209.09493 * 26 10 9 50 50 H 1.08997 * 109.47020 * 180.27137 * 29 27 26 51 51 H 1.09006 * 109.46968 * 300.27362 * 29 27 26 52 52 H 1.08997 * 109.46793 * 60.26776 * 29 27 26 53 53 H 1.08997 * 108.50769 * 269.81879 * 30 7 5 54 54 H 1.09004 * 108.50507 * 27.29138 * 30 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2366 -1.1217 0.7652 5 6 2.2365 -1.1210 -0.7649 6 1 1.6113 -1.8583 -1.2685 7 7 3.4968 -0.7897 -1.4430 8 6 4.5525 -1.6984 -1.0488 9 6 5.8802 -0.9277 -0.9233 10 7 6.0332 0.0697 -2.0030 11 6 6.5228 1.2861 -1.6914 12 8 6.5565 2.1620 -2.5341 13 7 6.9753 1.5316 -0.4458 14 6 7.4050 2.8823 -0.0755 15 6 7.7574 2.9153 1.4129 16 6 6.5845 2.9714 2.3575 17 1 6.6238 2.4440 3.2992 18 6 5.4612 3.6960 2.0196 19 7 5.5426 4.6557 1.1240 20 14 3.8238 3.3147 2.8337 21 1 3.9984 2.1987 3.7977 22 1 3.3363 4.5189 3.5531 23 1 2.8350 2.9230 1.7974 24 6 9.0301 3.6600 1.8212 25 6 8.9912 2.1310 1.8644 26 6 5.6800 -0.2016 -3.3795 27 6 4.1918 0.1608 -3.6135 28 1 4.0018 1.1688 -3.2445 29 6 3.8829 0.1017 -5.1108 30 6 3.3274 -0.7955 -2.8958 31 1 -0.3633 -0.9260 0.4454 32 1 -0.3634 0.8489 0.5792 33 1 -0.3633 0.0772 -1.0249 34 1 1.6113 -1.8595 1.2679 35 1 3.1720 -0.8768 1.2685 36 1 4.3028 -2.1496 -0.0885 37 1 4.6569 -2.4810 -1.8003 38 1 6.7083 -1.6349 -0.9721 39 1 5.9059 -0.4172 0.0393 40 1 7.0161 0.8139 0.2056 41 1 8.2809 3.1586 -0.6626 42 1 6.5978 3.5876 -0.2735 43 1 4.7707 5.2133 0.9391 44 1 9.6165 4.1260 1.0295 45 1 9.0192 4.1907 2.7733 46 1 8.9546 1.6560 2.8448 47 1 9.5515 1.5913 1.1010 48 1 5.8339 -1.2596 -3.5921 49 1 6.3077 0.3964 -4.0401 50 1 2.8374 0.3612 -5.2766 51 1 4.5213 0.8080 -5.6417 52 1 4.0702 -0.9063 -5.4808 53 1 3.5405 -1.7986 -3.2650 54 1 2.2877 -0.5604 -3.1238 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580750400.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:36 Heat of formation + Delta-G solvation = 21.423200 kcal Electronic energy + Delta-G solvation = -31740.730466 eV Core-core repulsion = 27906.871901 eV Total energy + Delta-G solvation = -3833.858565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.52000 -40.03797 -38.66068 -37.75482 -35.69303 -34.85508 -34.33772 -34.23383 -29.95042 -29.17856 -28.47259 -27.54364 -26.27122 -25.96984 -23.68810 -22.96180 -21.86733 -21.40560 -21.29763 -21.05548 -20.29913 -19.20845 -18.09773 -17.46792 -17.39373 -16.77055 -16.55387 -16.24220 -15.81177 -15.63568 -15.19757 -15.10544 -14.86292 -14.43333 -14.39235 -14.26530 -14.13630 -13.84916 -13.65999 -13.51472 -13.37657 -13.07397 -12.88524 -12.82608 -12.74200 -12.69066 -12.45759 -12.34078 -12.27024 -12.07101 -11.99725 -11.77050 -11.56523 -11.39024 -11.21519 -10.99802 -10.98393 -10.88463 -10.62319 -10.11209 -9.82580 -9.23837 -9.14471 -8.14345 -6.15885 1.34022 1.41891 1.48881 1.86269 2.37183 2.38722 2.70819 2.79205 2.95581 3.22330 3.67744 3.80403 3.86854 3.93945 3.98002 4.02552 4.02942 4.19570 4.26002 4.32180 4.40541 4.48011 4.54095 4.55651 4.60725 4.69274 4.70315 4.73703 4.77922 4.81386 4.81804 4.86042 4.87079 4.90103 4.94886 4.95406 5.04571 5.10734 5.16663 5.20372 5.25919 5.31082 5.38808 5.39906 5.55217 5.58632 5.81429 5.92684 5.95879 6.09756 6.27243 6.29289 6.38150 6.80959 7.22786 7.42839 7.80120 8.86981 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.009346 B = 0.005356 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.164246 B = 5226.121305 C = 6934.939819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.165 4.165 3 H 0.058 0.942 4 C -0.161 4.161 5 C 0.028 3.972 6 H 0.113 0.887 7 N -0.536 5.536 8 C 0.052 3.948 9 C 0.111 3.889 10 N -0.609 5.609 11 C 0.692 3.308 12 O -0.648 6.648 13 N -0.717 5.717 14 C 0.178 3.822 15 C 0.012 3.988 16 C -0.504 4.504 17 H 0.061 0.939 18 C 0.037 3.963 19 N -0.893 5.893 20 Si 0.937 3.063 21 H -0.258 1.258 22 H -0.286 1.286 23 H -0.290 1.290 24 C -0.199 4.199 25 C -0.175 4.175 26 C 0.145 3.855 27 C -0.104 4.104 28 H 0.027 0.973 29 C -0.131 4.131 30 C 0.079 3.921 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.400 0.600 41 H 0.015 0.985 42 H 0.072 0.928 43 H 0.259 0.741 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.057 0.943 50 H 0.060 0.940 51 H 0.049 0.951 52 H 0.081 0.919 53 H 0.062 0.938 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.797 -19.798 -6.367 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.185 4.185 3 H 0.077 0.923 4 C -0.198 4.198 5 C -0.080 4.080 6 H 0.130 0.870 7 N -0.259 5.259 8 C -0.077 4.077 9 C -0.012 4.012 10 N -0.344 5.344 11 C 0.394 3.606 12 O -0.531 6.531 13 N -0.372 5.372 14 C 0.054 3.946 15 C 0.012 3.988 16 C -0.541 4.541 17 H 0.079 0.921 18 C -0.165 4.165 19 N -0.529 5.529 20 Si 0.764 3.236 21 H -0.181 1.181 22 H -0.212 1.212 23 H -0.216 1.216 24 C -0.237 4.237 25 C -0.212 4.212 26 C 0.021 3.979 27 C -0.125 4.125 28 H 0.046 0.954 29 C -0.189 4.189 30 C -0.048 4.048 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.141 0.859 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.237 0.763 41 H 0.033 0.967 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.120 0.880 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.068 0.932 52 H 0.100 0.900 53 H 0.080 0.920 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.766 -18.638 -6.940 21.007 hybrid contribution -0.819 0.161 0.598 1.027 sum -7.585 -18.477 -6.341 20.956 Atomic orbital electron populations 1.21305 0.91050 1.02524 1.02085 1.22477 0.96055 0.94078 1.05874 0.92320 1.23288 1.02474 1.01079 0.93001 1.22576 0.92808 0.99784 0.92834 0.86997 1.60321 1.05128 1.52932 1.07560 1.22382 0.89674 0.92799 1.02808 1.22245 0.98549 0.91196 0.89238 1.46739 1.66371 1.11873 1.09426 1.16270 0.78468 0.83175 0.82715 1.90801 1.65734 1.46475 1.50129 1.45138 1.68146 1.12533 1.11364 1.20602 0.98039 0.82735 0.93238 1.19149 0.87822 1.00312 0.91566 1.20642 0.98593 1.31332 1.03494 0.92054 1.25544 1.01530 0.93982 0.95420 1.70029 1.30735 1.17290 1.34880 0.85827 0.80900 0.78514 0.78364 1.18127 1.21214 1.21607 1.22928 1.04933 0.94283 1.01568 1.22863 1.03307 0.93130 1.01903 1.21364 0.94401 1.01350 0.80774 1.20871 0.96061 0.98708 0.96828 0.95441 1.21637 1.01639 1.02996 0.92660 1.20902 0.99345 0.98745 0.85812 0.90444 0.93066 0.91822 0.85894 0.89953 0.88675 0.91137 0.88945 0.91887 0.76311 0.96720 0.90987 0.93203 0.91079 0.90685 0.89317 0.89463 0.87957 0.92406 0.92117 0.93200 0.90015 0.91992 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 10.19 71.98 0.73 -1.60 16 2 C -0.17 -4.49 6.34 -10.77 -0.07 -4.55 16 3 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.16 -3.61 8.96 30.62 0.27 -3.33 16 5 C 0.03 0.62 4.65 44.92 0.21 0.83 16 6 H 0.11 1.91 8.09 -2.39 -0.02 1.89 16 7 N -0.54 -13.37 4.30 -886.59 -3.81 -17.18 16 8 C 0.05 1.03 5.37 87.05 0.47 1.49 16 9 C 0.11 2.73 6.21 86.48 0.54 3.27 16 10 N -0.61 -19.73 2.54 -835.14 -2.12 -21.85 16 11 C 0.69 30.49 8.19 179.05 1.47 31.96 16 12 O -0.65 -34.38 15.82 -4.00 -0.06 -34.44 16 13 N -0.72 -31.53 5.31 -478.54 -2.54 -34.08 16 14 C 0.18 9.13 5.30 86.38 0.46 9.58 16 15 C 0.01 0.60 1.71 -52.93 -0.09 0.51 16 16 C -0.50 -26.77 8.98 25.60 0.23 -26.54 16 17 H 0.06 3.20 7.90 -2.91 -0.02 3.17 16 18 C 0.04 2.04 5.05 84.65 0.43 2.47 16 19 N -0.89 -52.79 11.13 21.45 0.24 -52.55 16 20 Si 0.94 44.16 29.59 68.60 2.03 46.19 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 24 C -0.20 -8.95 9.88 30.60 0.30 -8.64 16 25 C -0.17 -7.00 9.94 30.60 0.30 -6.70 16 26 C 0.14 3.98 4.70 87.38 0.41 4.39 16 27 C -0.10 -2.80 2.87 -11.83 -0.03 -2.83 16 28 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 29 C -0.13 -2.64 9.14 71.98 0.66 -1.98 16 30 C 0.08 1.74 4.16 84.72 0.35 2.10 16 31 H 0.08 1.23 7.90 -2.39 -0.02 1.21 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.12 2.02 8.05 -2.39 -0.02 2.00 16 35 H 0.08 2.17 7.79 -2.39 -0.02 2.15 16 36 H 0.10 1.66 6.49 -2.39 -0.02 1.64 16 37 H 0.07 1.04 7.14 -2.39 -0.02 1.02 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.83 5.92 -2.39 -0.01 1.81 16 40 H 0.40 15.58 6.08 -92.71 -0.56 15.02 16 41 H 0.01 0.76 7.97 -2.38 -0.02 0.74 16 42 H 0.07 4.37 5.47 -2.39 -0.01 4.36 16 43 H 0.26 14.89 8.32 -92.71 -0.77 14.12 16 44 H 0.07 3.09 8.10 -2.39 -0.02 3.07 16 45 H 0.07 3.42 8.14 -2.38 -0.02 3.40 16 46 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 47 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 48 H 0.10 1.97 8.10 -2.39 -0.02 1.95 16 49 H 0.06 1.86 7.32 -2.39 -0.02 1.84 16 50 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 52 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.06 1.01 7.18 -2.39 -0.02 0.99 16 54 H 0.06 1.37 7.66 -2.38 -0.02 1.35 16 Total: -1.00 -72.07 416.73 0.67 -71.40 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: 0.30 Total: 42.10 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 6.64 Total: 0.42 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -8.24 Total: -125.66 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.06 Total: -34.44 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -72.07 0.67 -71.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580750400.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.819 kcal (2) G-P(sol) polarization free energy of solvation -72.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds