Wall clock time and date at job start Tue Mar 31 2020 19:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.55009 * 2 1 4 4 C 1.53005 * 117.49704 * 214.33168 * 2 1 3 5 5 C 1.52998 * 117.51675 * 145.70580 * 2 1 3 6 6 H 1.08999 * 117.49917 * 214.96991 * 5 2 1 7 7 N 1.46906 * 117.50093 * 359.97438 * 5 2 1 8 8 C 1.44765 * 110.99898 * 167.70123 * 7 5 2 9 9 C 1.54027 * 109.67978 * 217.86098 * 8 7 5 10 10 N 1.47781 * 111.55460 * 320.00503 * 9 8 7 11 11 C 1.34785 * 118.54575 * 138.09354 * 10 9 8 12 12 O 1.21588 * 120.00003 * 181.31476 * 11 10 9 13 13 N 1.34775 * 119.99870 * 1.30837 * 11 10 9 14 14 C 1.46499 * 119.99588 * 175.99671 * 13 11 10 15 15 C 1.53005 * 109.46957 * 183.96537 * 14 13 11 16 16 C 1.50701 * 115.55008 * 316.89396 * 15 14 13 17 17 H 1.08001 * 119.99922 * 120.09924 * 16 15 14 18 18 C 1.37878 * 119.99836 * 300.09565 * 16 15 14 19 19 N 1.31512 * 120.00225 * 353.33939 * 18 16 15 20 20 Si 1.86805 * 119.99930 * 173.33489 * 18 16 15 21 21 H 1.48506 * 109.46813 * 59.99843 * 20 18 16 22 22 H 1.48496 * 109.46897 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47010 * 300.00294 * 20 18 16 24 24 C 1.53001 * 117.49900 * 171.21965 * 15 14 13 25 25 C 1.53001 * 117.49629 * 102.56043 * 15 14 13 26 26 C 1.44676 * 122.90869 * 318.11519 * 10 9 8 27 27 C 1.54942 * 109.52655 * 89.07596 * 26 10 9 28 28 H 1.09001 * 109.42545 * 50.60557 * 27 26 10 29 29 C 1.52999 * 109.38645 * 170.46898 * 27 26 10 30 30 C 1.46257 * 110.99985 * 291.19495 * 7 5 2 31 31 H 1.08994 * 109.47342 * 193.88319 * 1 2 3 32 32 H 1.09002 * 109.46878 * 313.87796 * 1 2 3 33 33 H 1.08998 * 109.46853 * 73.87877 * 1 2 3 34 34 H 1.08997 * 117.49641 * 359.97438 * 4 2 1 35 35 H 1.08998 * 117.49581 * 144.97494 * 4 2 1 36 36 H 1.09000 * 109.43492 * 337.92611 * 8 7 5 37 37 H 1.09000 * 109.42874 * 97.80126 * 8 7 5 38 38 H 1.09000 * 109.06134 * 199.47800 * 9 8 7 39 39 H 1.08993 * 109.00777 * 80.50178 * 9 8 7 40 40 H 0.97000 * 119.99628 * 356.00608 * 13 11 10 41 41 H 1.08995 * 109.47592 * 303.96855 * 14 13 11 42 42 H 1.08999 * 109.46614 * 63.97204 * 14 13 11 43 43 H 0.97002 * 120.00055 * 185.03295 * 19 18 16 44 44 H 1.08998 * 117.49687 * 0.02562 * 24 15 14 45 45 H 1.08998 * 117.49475 * 145.02082 * 24 15 14 46 46 H 1.09002 * 117.49985 * 214.98336 * 25 15 14 47 47 H 1.09000 * 117.49746 * 359.97438 * 25 15 14 48 48 H 1.09002 * 109.46097 * 329.05846 * 26 10 9 49 49 H 1.09003 * 109.45545 * 209.08667 * 26 10 9 50 50 H 1.09002 * 109.47144 * 180.23690 * 29 27 26 51 51 H 1.08992 * 109.47246 * 300.24242 * 29 27 26 52 52 H 1.08996 * 109.46655 * 60.24557 * 29 27 26 53 53 H 1.08993 * 108.50811 * 269.81701 * 30 7 5 54 54 H 1.08999 * 108.50306 * 27.44463 * 30 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1208 -0.7654 5 6 2.2369 -1.1210 0.7645 6 1 3.1721 -0.8751 1.2676 7 7 1.3946 -2.1151 1.4432 8 6 2.1790 -3.2540 1.8714 9 6 1.3631 -4.5465 1.6818 10 7 -0.0537 -4.3540 2.0554 11 6 -1.0062 -4.8962 1.2709 12 8 -2.1807 -4.7340 1.5402 13 7 -0.6566 -5.6182 0.1878 14 6 -1.6877 -6.2806 -0.6148 15 6 -1.0229 -7.1072 -1.7175 16 6 0.1236 -6.4374 -2.4302 17 1 1.1062 -6.8853 -2.4124 18 6 -0.0819 -5.2528 -3.1051 19 7 -1.2998 -4.7748 -3.2387 20 14 1.3696 -4.3267 -3.8297 21 1 2.0619 -5.1889 -4.8210 22 1 0.8852 -3.0927 -4.4990 23 1 2.3156 -3.9620 -2.7446 24 6 -1.9166 -8.0397 -2.5376 25 6 -0.9396 -8.6211 -1.5126 26 6 -0.4637 -3.6088 3.2258 27 6 -0.6310 -2.1136 2.8553 28 1 -1.2608 -2.0278 1.9698 29 6 -1.2884 -1.3721 4.0210 30 6 0.6902 -1.5183 2.5775 31 1 -0.3634 -0.9976 0.2466 32 1 -0.3633 0.7123 0.7408 33 1 -0.3633 0.2854 -0.9872 34 1 1.6112 -1.8583 -1.2686 35 1 3.1711 -0.8745 -1.2693 36 1 3.0910 -3.3103 1.2771 37 1 2.4389 -3.1402 2.9238 38 1 1.7915 -5.3324 2.3038 39 1 1.4174 -4.8505 0.6365 40 1 0.2777 -5.6992 -0.0600 41 1 -2.2799 -6.9360 0.0236 42 1 -2.3361 -5.5290 -1.0651 43 1 -1.4532 -3.9812 -3.7750 44 1 -2.9783 -8.0639 -2.2918 45 1 -1.6751 -8.1689 -3.5926 46 1 -0.0558 -9.1327 -1.8937 47 1 -1.3581 -9.0281 -0.5921 48 1 0.2940 -3.7077 4.0031 49 1 -1.4127 -4.0006 3.5917 50 1 -1.4106 -0.3208 3.7602 51 1 -2.2645 -1.8113 4.2268 52 1 -0.6583 -1.4558 4.9064 53 1 1.3118 -1.6260 3.4663 54 1 0.5533 -0.4553 2.3793 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580750406.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:46 Heat of formation + Delta-G solvation = 22.417047 kcal Electronic energy + Delta-G solvation = -32144.459811 eV Core-core repulsion = 28310.644342 eV Total energy + Delta-G solvation = -3833.815469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.51596 -40.10002 -38.59302 -37.62161 -35.67200 -34.73855 -34.37848 -34.05380 -29.72463 -29.52325 -28.46813 -27.45623 -26.31688 -25.94351 -23.38695 -22.92898 -22.19238 -21.67382 -21.19817 -20.60923 -20.20641 -19.07308 -18.12012 -17.50578 -16.92509 -16.67865 -16.48152 -16.32589 -16.05199 -15.81704 -15.49706 -14.94767 -14.71719 -14.45106 -14.35536 -14.27084 -13.83507 -13.66534 -13.58546 -13.45242 -13.39420 -13.16907 -12.90646 -12.83712 -12.76591 -12.71475 -12.43341 -12.38584 -12.29751 -12.01934 -11.93247 -11.74536 -11.51130 -11.42183 -11.10197 -10.98723 -10.86666 -10.74350 -10.50633 -10.11831 -9.78118 -9.19879 -9.11801 -8.07273 -6.19481 1.41692 1.43981 1.49616 1.93737 2.40017 2.43130 2.74243 2.79486 3.11204 3.32447 3.57084 3.83172 3.87754 3.94966 3.96226 4.02796 4.05146 4.25932 4.29772 4.38330 4.44005 4.51128 4.53922 4.59949 4.62935 4.71609 4.72933 4.74881 4.77988 4.80020 4.82683 4.89178 4.90632 4.93878 4.97864 4.99431 5.00988 5.12800 5.14966 5.25121 5.29646 5.33685 5.39813 5.48876 5.53281 5.60483 5.80244 5.85884 5.97673 6.13066 6.28958 6.33081 6.40388 6.84976 7.29761 7.48319 7.84570 8.98315 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.010560 B = 0.005376 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.909323 B = 5206.913449 C = 6748.548812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.134 4.134 3 H 0.127 0.873 4 C -0.181 4.181 5 C 0.024 3.976 6 H 0.113 0.887 7 N -0.530 5.530 8 C 0.055 3.945 9 C 0.113 3.887 10 N -0.607 5.607 11 C 0.692 3.308 12 O -0.652 6.652 13 N -0.710 5.710 14 C 0.201 3.799 15 C 0.011 3.989 16 C -0.504 4.504 17 H 0.062 0.938 18 C 0.041 3.959 19 N -0.898 5.898 20 Si 0.937 3.063 21 H -0.274 1.274 22 H -0.299 1.299 23 H -0.256 1.256 24 C -0.182 4.182 25 C -0.178 4.178 26 C 0.143 3.857 27 C -0.103 4.103 28 H 0.033 0.967 29 C -0.132 4.132 30 C 0.076 3.924 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.403 0.597 41 H 0.027 0.973 42 H 0.029 0.971 43 H 0.255 0.745 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.099 0.901 49 H 0.059 0.941 50 H 0.062 0.938 51 H 0.049 0.951 52 H 0.078 0.922 53 H 0.056 0.944 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.043 8.521 14.215 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.153 4.153 3 H 0.145 0.855 4 C -0.219 4.219 5 C -0.084 4.084 6 H 0.130 0.870 7 N -0.253 5.253 8 C -0.074 4.074 9 C -0.010 4.010 10 N -0.343 5.343 11 C 0.393 3.607 12 O -0.536 6.536 13 N -0.366 5.366 14 C 0.076 3.924 15 C 0.011 3.989 16 C -0.541 4.541 17 H 0.081 0.919 18 C -0.161 4.161 19 N -0.534 5.534 20 Si 0.763 3.237 21 H -0.200 1.200 22 H -0.225 1.225 23 H -0.181 1.181 24 C -0.220 4.220 25 C -0.215 4.215 26 C 0.019 3.981 27 C -0.124 4.124 28 H 0.052 0.948 29 C -0.190 4.190 30 C -0.050 4.050 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.243 0.757 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.117 0.883 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.068 0.932 52 H 0.097 0.903 53 H 0.074 0.926 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.812 8.629 14.067 19.199 hybrid contribution 0.803 0.545 -0.990 1.386 sum 10.616 9.174 13.077 19.180 Atomic orbital electron populations 1.21283 0.93830 1.01711 1.00878 1.22455 0.94971 0.94432 1.03404 0.85510 1.23107 1.02549 1.01696 0.94527 1.22543 0.97136 0.96202 0.92489 0.87018 1.60283 1.28842 1.07470 1.28717 1.22318 0.95168 0.89204 1.00748 1.22179 0.80013 0.98307 1.00495 1.46710 1.05194 1.55666 1.26685 1.16259 0.84815 0.79004 0.80616 1.90780 1.18741 1.68289 1.75742 1.45164 1.11389 1.53251 1.26793 1.20218 0.88697 0.93780 0.89732 1.19122 0.97154 0.87438 0.95214 1.20522 0.94276 1.06143 1.33189 0.91940 1.25538 0.97044 0.97515 0.96000 1.70088 1.21567 1.23108 1.38629 0.85946 0.80826 0.77810 0.79121 1.19989 1.22519 1.18060 1.22702 0.95052 1.08076 0.96203 1.22982 1.01100 0.97721 0.99727 1.21382 1.00595 0.90051 0.86035 1.20891 0.97055 0.95797 0.98615 0.94814 1.21639 1.00428 0.99774 0.97152 1.20935 0.94374 0.98469 0.91268 0.93737 0.91213 0.93832 0.92277 0.87287 0.89222 0.90996 0.89237 0.92225 0.75697 0.95438 0.95298 0.93565 0.91270 0.91182 0.89432 0.89626 0.88297 0.92298 0.91943 0.93188 0.90327 0.92629 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.29 8.65 71.98 0.62 -2.67 16 2 C -0.13 -3.07 6.07 -10.79 -0.07 -3.14 16 3 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.18 -4.86 10.18 30.60 0.31 -4.55 16 5 C 0.02 0.54 4.63 44.91 0.21 0.74 16 6 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 7 N -0.53 -13.05 3.39 -886.62 -3.01 -16.06 16 8 C 0.05 1.13 5.52 87.05 0.48 1.62 16 9 C 0.11 2.99 6.37 86.48 0.55 3.54 16 10 N -0.61 -20.01 2.54 -835.15 -2.12 -22.13 16 11 C 0.69 30.53 8.22 179.05 1.47 32.00 16 12 O -0.65 -33.82 15.76 -3.99 -0.06 -33.88 16 13 N -0.71 -32.18 5.25 -478.53 -2.51 -34.69 16 14 C 0.20 10.09 5.32 86.38 0.46 10.55 16 15 C 0.01 0.55 1.73 -52.93 -0.09 0.46 16 16 C -0.50 -25.74 7.56 25.60 0.19 -25.54 16 17 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 18 C 0.04 2.19 5.35 84.66 0.45 2.64 16 19 N -0.90 -51.67 12.29 21.45 0.26 -51.41 16 20 Si 0.94 42.13 29.55 68.60 2.03 44.16 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 22 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 C -0.18 -8.37 9.96 30.62 0.30 -8.06 16 25 C -0.18 -7.34 9.89 30.62 0.30 -7.03 16 26 C 0.14 3.93 4.74 87.38 0.41 4.35 16 27 C -0.10 -2.66 2.86 -11.83 -0.03 -2.70 16 28 H 0.03 1.22 7.41 -2.39 -0.02 1.20 16 29 C -0.13 -2.56 9.14 71.98 0.66 -1.90 16 30 C 0.08 1.64 3.18 84.72 0.27 1.91 16 31 H 0.04 1.54 5.89 -2.39 -0.01 1.53 16 32 H 0.07 1.60 7.88 -2.39 -0.02 1.58 16 33 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.09 1.71 7.64 -2.39 -0.02 1.69 16 37 H 0.07 1.11 7.14 -2.39 -0.02 1.10 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 1.90 5.62 -2.39 -0.01 1.88 16 40 H 0.40 17.37 4.86 -92.71 -0.45 16.92 16 41 H 0.03 1.35 7.98 -2.39 -0.02 1.33 16 42 H 0.03 1.70 7.38 -2.39 -0.02 1.68 16 43 H 0.26 14.48 8.32 -92.71 -0.77 13.71 16 44 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 45 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 46 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 47 H 0.09 3.21 8.11 -2.39 -0.02 3.19 16 48 H 0.10 1.97 8.10 -2.39 -0.02 1.95 16 49 H 0.06 1.89 7.25 -2.39 -0.02 1.88 16 50 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 53 H 0.06 0.93 7.18 -2.39 -0.02 0.91 16 54 H 0.07 1.46 5.99 -2.39 -0.01 1.45 16 Total: -1.00 -68.18 411.73 1.52 -66.66 By element: Atomic # 1 Polarization: 44.71 SS G_CDS: 0.42 Total: 45.13 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 6.51 Total: 2.22 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -7.37 Total: -124.29 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.06 Total: -33.88 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -68.18 1.52 -66.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580750406.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.078 kcal (2) G-P(sol) polarization free energy of solvation -68.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds