Wall clock time and date at job start Tue Mar 31 2020 18:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 111.00935 * 2 1 4 4 C 1.56222 * 111.15132 * 124.26807 * 2 1 3 5 5 N 1.49292 * 106.51328 * 94.43405 * 4 2 1 6 6 C 1.34778 * 127.10512 * 171.35540 * 5 4 2 7 7 O 1.21585 * 119.99814 * 179.97438 * 6 5 4 8 8 N 1.34774 * 120.00025 * 359.97438 * 6 5 4 9 9 C 1.46502 * 119.99932 * 180.02562 * 8 6 5 10 10 C 1.53043 * 109.45908 * 275.02926 * 9 8 6 11 11 C 1.53195 * 109.31275 * 178.60058 * 10 9 8 12 12 N 1.46923 * 108.76104 * 54.65317 * 11 10 9 13 13 C 1.36943 * 120.62690 * 126.36406 * 12 11 10 14 14 H 1.08001 * 119.99960 * 208.01673 * 13 12 11 15 15 C 1.38813 * 119.99787 * 28.02073 * 13 12 11 16 16 N 1.31612 * 120.00068 * 17.52580 * 15 13 12 17 17 Si 1.86807 * 119.99763 * 197.52279 * 15 13 12 18 18 H 1.48499 * 109.46882 * 94.06685 * 17 15 13 19 19 H 1.48495 * 109.47023 * 214.06866 * 17 15 13 20 20 H 1.48503 * 109.46968 * 334.06939 * 17 15 13 21 21 C 1.46920 * 118.74587 * 306.38416 * 12 11 10 22 22 C 1.53039 * 109.45890 * 154.97699 * 9 8 6 23 23 C 1.42711 * 105.79313 * 351.33955 * 5 4 2 24 24 H 1.08999 * 108.17235 * 284.12449 * 23 5 4 25 25 C 1.50520 * 128.14354 * 151.69779 * 23 5 4 26 26 C 1.56277 * 101.76179 * 198.70896 * 25 23 5 27 27 C 1.55698 * 105.93543 * 24.25473 * 26 25 23 28 28 C 1.51216 * 104.70853 * 7.19569 * 27 26 25 29 29 H 1.09007 * 111.07030 * 83.92361 * 28 27 26 30 30 H 1.09000 * 109.46827 * 297.18938 * 1 2 3 31 31 H 1.09000 * 109.46909 * 57.18598 * 1 2 3 32 32 H 1.09000 * 109.47118 * 177.18329 * 1 2 3 33 33 H 1.08994 * 109.47021 * 182.81296 * 3 2 1 34 34 H 1.09003 * 109.46891 * 302.81047 * 3 2 1 35 35 H 1.09001 * 109.46620 * 62.81106 * 3 2 1 36 36 H 1.08998 * 110.05018 * 335.17337 * 4 2 1 37 37 H 1.09006 * 110.09426 * 213.72120 * 4 2 1 38 38 H 0.97003 * 119.99919 * 0.02562 * 8 6 5 39 39 H 1.09000 * 109.45903 * 34.99999 * 9 8 6 40 40 H 1.08998 * 109.49471 * 298.56636 * 10 9 8 41 41 H 1.09005 * 109.49767 * 58.66590 * 10 9 8 42 42 H 1.09006 * 109.59713 * 294.87224 * 11 10 9 43 43 H 1.08995 * 109.70393 * 174.50556 * 11 10 9 44 44 H 0.97007 * 119.99805 * 179.97438 * 16 15 13 45 45 H 1.09004 * 109.58695 * 293.82341 * 21 12 11 46 46 H 1.08997 * 109.59037 * 173.39832 * 21 12 11 47 47 H 1.09003 * 109.49494 * 301.33038 * 22 9 8 48 48 H 1.08995 * 109.49877 * 61.43524 * 22 9 8 49 49 H 1.08995 * 110.97375 * 80.58829 * 25 23 5 50 50 H 1.09004 * 111.00045 * 316.83924 * 25 23 5 51 51 H 1.08996 * 110.16005 * 265.13889 * 26 25 23 52 52 H 1.08997 * 110.16301 * 143.37273 * 26 25 23 53 53 H 1.09003 * 110.40909 * 126.03421 * 27 26 25 54 54 H 1.08993 * 110.40986 * 248.35126 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0786 1.4284 0.0000 4 6 2.0937 -0.8204 1.2041 5 7 2.3501 -2.2001 0.6946 6 6 2.9857 -3.1993 1.3379 7 8 3.1230 -4.2798 0.7975 8 7 3.4692 -3.0009 2.5802 9 6 4.1606 -4.0869 3.2793 10 6 3.1326 -4.9786 3.9795 11 6 3.8565 -6.1327 4.6801 12 7 4.8799 -5.5749 5.5746 13 6 4.9157 -5.9251 6.8980 14 1 5.3187 -5.2383 7.6276 15 6 4.4340 -7.1628 7.3017 16 7 4.2672 -8.1240 6.4183 17 14 4.0226 -7.4640 9.0988 18 1 2.5788 -7.2018 9.3267 19 1 4.3306 -8.8742 9.4475 20 1 4.8312 -6.5554 9.9507 21 6 5.8641 -4.6341 5.0224 22 6 5.1176 -3.4970 4.3176 23 6 1.7826 -2.2425 -0.6142 24 1 0.7000 -2.3179 -0.5130 25 6 2.2046 -3.0914 -1.7833 26 6 1.5506 -2.3309 -2.9817 27 6 1.3711 -0.8589 -2.5070 28 6 2.0769 -0.7975 -1.1711 29 1 3.1463 -0.6303 -1.3003 30 1 -0.3633 0.4696 0.9141 31 1 -0.3633 0.5569 -0.8637 32 1 -0.3633 -1.0264 -0.0505 33 1 3.1670 1.3995 -0.0504 34 1 1.6890 1.9672 -0.8638 35 1 1.7705 1.9358 0.9142 36 1 1.3619 -0.8501 2.0113 37 1 3.0230 -0.3744 1.5588 38 1 3.3593 -2.1390 3.0115 39 1 4.7257 -4.6799 2.5601 40 1 2.5842 -4.3919 4.7164 41 1 2.4369 -5.3798 3.2424 42 1 4.3310 -6.7722 3.9358 43 1 3.1420 -6.7159 5.2610 44 1 3.9309 -8.9891 6.7005 45 1 6.5023 -5.1515 4.3060 46 1 6.4728 -4.2266 5.8295 47 1 5.8351 -2.8436 3.8213 48 1 4.5503 -2.9245 5.0514 49 1 1.8039 -4.1013 -1.6969 50 1 3.2902 -3.1115 -1.8798 51 1 0.5818 -2.7692 -3.2210 52 1 2.2054 -2.3675 -3.8523 53 1 1.8358 -0.1720 -3.2144 54 1 0.3133 -0.6239 -2.3892 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590804275.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:26 Heat of formation + Delta-G solvation = -22.355429 kcal Electronic energy + Delta-G solvation = -30715.049983 eV Core-core repulsion = 26879.293034 eV Total energy + Delta-G solvation = -3835.756949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.29886 -40.49105 -38.87534 -36.36600 -35.92389 -34.82484 -33.78271 -31.77351 -31.21524 -29.01729 -28.51848 -28.15120 -27.32566 -26.62857 -23.97554 -23.89223 -22.51826 -21.82381 -21.20889 -20.49347 -19.50994 -18.88896 -18.30560 -17.84351 -17.03855 -16.70343 -16.35871 -16.02909 -15.65801 -15.41366 -15.35191 -14.99427 -14.83988 -14.75103 -14.46452 -14.27636 -14.25162 -13.99182 -13.55302 -13.33445 -13.20167 -13.03833 -12.82128 -12.67518 -12.64510 -12.61850 -12.41618 -12.29669 -12.16485 -12.12509 -12.03485 -11.87556 -11.57465 -11.56187 -11.43702 -11.34702 -11.22652 -11.19042 -10.97624 -10.59659 -10.11843 -9.40683 -8.73481 -7.88242 -5.34774 1.46917 1.48362 1.57437 1.58113 2.12272 2.50992 2.79785 3.20369 3.27850 3.52353 3.65038 3.72305 3.85227 3.94334 4.06191 4.06859 4.08885 4.31341 4.32650 4.42879 4.44432 4.45247 4.52971 4.58432 4.64105 4.64607 4.77147 4.77901 4.81176 4.86134 4.89509 4.97695 5.01491 5.04286 5.05880 5.09854 5.11505 5.15565 5.18240 5.21564 5.27692 5.29302 5.36874 5.43042 5.44118 5.52846 5.58550 5.59669 5.63566 5.67667 6.20592 6.37420 6.97949 7.11862 7.59928 7.82736 8.36175 9.19082 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.022427 B = 0.002470 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.215356 B =11335.454993 C =11740.901100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C -0.131 4.131 4 C 0.104 3.896 5 N -0.623 5.623 6 C 0.712 3.288 7 O -0.633 6.633 8 N -0.724 5.724 9 C 0.182 3.818 10 C -0.128 4.128 11 C 0.185 3.815 12 N -0.609 5.609 13 C -0.261 4.261 14 H 0.076 0.924 15 C -0.056 4.056 16 N -0.939 5.939 17 Si 0.970 3.030 18 H -0.287 1.287 19 H -0.297 1.297 20 H -0.262 1.262 21 C 0.142 3.858 22 C -0.119 4.119 23 C 0.118 3.882 24 H 0.063 0.937 25 C -0.112 4.112 26 C -0.113 4.113 27 C -0.103 4.103 28 C -0.098 4.098 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.407 0.593 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.039 0.961 42 H -0.013 1.013 43 H 0.055 0.945 44 H 0.249 0.751 45 H 0.011 0.989 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.076 0.924 49 H 0.047 0.953 50 H 0.050 0.950 51 H 0.075 0.925 52 H 0.077 0.923 53 H 0.084 0.916 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.713 25.005 -17.067 31.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.053 4.053 3 C -0.189 4.189 4 C -0.017 4.017 5 N -0.360 5.360 6 C 0.414 3.586 7 O -0.514 6.514 8 N -0.378 5.378 9 C 0.076 3.924 10 C -0.169 4.169 11 C 0.058 3.942 12 N -0.333 5.333 13 C -0.391 4.391 14 H 0.093 0.907 15 C -0.251 4.251 16 N -0.585 5.585 17 Si 0.798 3.202 18 H -0.214 1.214 19 H -0.224 1.224 20 H -0.187 1.187 21 C 0.016 3.984 22 C -0.159 4.159 23 C 0.012 3.988 24 H 0.081 0.919 25 C -0.150 4.150 26 C -0.151 4.151 27 C -0.141 4.141 28 C -0.117 4.117 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.243 0.757 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.005 0.995 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.029 0.971 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.066 0.934 50 H 0.068 0.932 51 H 0.094 0.906 52 H 0.095 0.905 53 H 0.103 0.897 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.593 24.009 -17.346 30.577 hybrid contribution -0.104 -1.128 1.129 1.599 sum -7.696 22.881 -16.217 29.083 Atomic orbital electron populations 1.21891 0.92589 1.01847 1.03340 1.21124 0.96550 0.95350 0.92274 1.21738 1.00775 0.93073 1.03280 1.23287 1.01491 0.79236 0.97727 1.46792 1.59553 1.12560 1.17071 1.15777 0.78378 0.83030 0.81414 1.90900 1.65424 1.26242 1.68820 1.45109 1.61274 1.16525 1.14921 1.20510 0.92178 0.87172 0.92519 1.22306 0.98069 0.98269 0.98248 1.20436 0.90846 0.92045 0.90862 1.44357 1.30847 1.51498 1.06551 1.19599 1.37860 0.97480 0.84183 0.90685 1.25903 1.02646 0.94882 1.01633 1.70224 1.50344 1.02867 1.35097 0.85203 0.78057 0.76688 0.80209 1.21389 1.22434 1.18660 1.21040 0.90981 0.90083 0.96254 1.22131 0.98246 0.98446 0.97062 1.21401 0.96813 0.98009 0.82562 0.91940 1.21760 1.00189 0.98270 0.94780 1.22826 1.01071 0.94800 0.96386 1.21668 1.01666 0.96031 0.94736 1.22591 1.00618 0.93618 0.94916 0.90699 0.91349 0.90365 0.93410 0.92537 0.90856 0.91257 0.90374 0.89793 0.75699 0.92911 0.92120 0.94201 0.99457 0.92705 0.94188 0.97107 0.91111 0.89166 0.90558 0.93444 0.93154 0.90612 0.90462 0.89724 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 7.60 71.98 0.55 -0.80 16 2 C -0.05 -0.59 0.94 -51.43 -0.05 -0.63 16 3 C -0.13 -0.96 8.63 71.98 0.62 -0.34 16 4 C 0.10 1.61 5.63 86.96 0.49 2.10 16 5 N -0.62 -15.52 3.22 -805.93 -2.59 -18.11 16 6 C 0.71 23.97 8.49 179.05 1.52 25.49 16 7 O -0.63 -27.68 15.73 -3.98 -0.06 -27.74 16 8 N -0.72 -21.59 5.05 -457.68 -2.31 -23.90 16 9 C 0.18 6.65 2.42 45.02 0.11 6.76 16 10 C -0.13 -5.51 5.65 30.67 0.17 -5.34 16 11 C 0.18 9.71 5.31 86.36 0.46 10.17 16 12 N -0.61 -31.44 2.99 -699.10 -2.09 -33.53 16 13 C -0.26 -14.49 9.58 84.03 0.81 -13.69 16 14 H 0.08 3.96 7.89 -2.91 -0.02 3.93 16 15 C -0.06 -3.18 4.90 84.86 0.42 -2.76 16 16 N -0.94 -57.91 11.22 21.65 0.24 -57.67 16 17 Si 0.97 45.53 29.59 68.60 2.03 47.56 16 18 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 19 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 21 C 0.14 5.88 6.52 86.36 0.56 6.44 16 22 C -0.12 -3.84 5.55 30.67 0.17 -3.67 16 23 C 0.12 2.61 2.80 46.52 0.13 2.74 16 24 H 0.06 1.38 5.83 -2.39 -0.01 1.36 16 25 C -0.11 -2.64 5.97 30.93 0.18 -2.45 16 26 C -0.11 -1.64 6.93 32.67 0.23 -1.41 16 27 C -0.10 -1.12 6.38 30.94 0.20 -0.92 16 28 C -0.10 -1.40 2.43 -10.11 -0.02 -1.42 16 29 H 0.07 1.23 8.11 -2.38 -0.02 1.21 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.53 7.34 -2.39 -0.02 0.51 16 32 H 0.05 0.62 6.07 -2.39 -0.01 0.60 16 33 H 0.06 0.46 8.13 -2.39 -0.02 0.44 16 34 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.08 1.12 7.91 -2.39 -0.02 1.10 16 37 H 0.08 1.10 7.78 -2.38 -0.02 1.08 16 38 H 0.41 9.20 7.62 -92.71 -0.71 8.49 16 39 H 0.05 2.26 7.58 -2.39 -0.02 2.25 16 40 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 42 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 43 H 0.05 3.23 6.06 -2.39 -0.01 3.21 16 44 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 45 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.07 2.73 7.93 -2.39 -0.02 2.71 16 47 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 49 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 53 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 54 H 0.08 0.73 6.44 -2.39 -0.02 0.71 16 Total: -1.00 -74.99 401.85 1.91 -73.08 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.16 Total: 20.04 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 6.54 Total: 20.27 kcal Atomic # 7 Polarization: -126.46 SS G_CDS: -6.75 Total: -133.21 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.06 Total: -27.74 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -74.99 1.91 -73.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590804275.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.726 kcal (2) G-P(sol) polarization free energy of solvation -74.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds