Wall clock time and date at job start Tue Mar 31 2020 18:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99694 * 2 1 4 4 C 1.53002 * 109.46687 * 125.00609 * 3 2 1 5 5 C 1.53007 * 110.01747 * 305.16392 * 4 3 2 6 6 N 1.46501 * 109.47188 * 295.12920 * 5 4 3 7 7 C 1.34772 * 119.99863 * 184.99439 * 6 5 4 8 8 O 1.21583 * 120.00064 * 4.95368 * 7 6 5 9 9 N 1.34775 * 119.99948 * 184.95881 * 7 6 5 10 10 C 1.47078 * 120.88465 * 354.70529 * 9 7 6 11 11 C 1.53233 * 108.52137 * 231.16447 * 10 9 7 12 12 N 1.46897 * 109.33914 * 306.16429 * 11 10 9 13 13 C 1.46905 * 110.99748 * 187.25568 * 12 11 10 14 14 C 1.50701 * 109.46662 * 170.00093 * 13 12 11 15 15 H 1.08000 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99917 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00343 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99881 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46934 * 89.99788 * 18 16 14 20 20 H 1.48497 * 109.47306 * 210.00219 * 18 16 14 21 21 H 1.48498 * 109.47328 * 330.00178 * 18 16 14 22 22 C 1.46894 * 111.27053 * 63.10818 * 12 11 10 23 23 C 1.47079 * 120.88221 * 174.68018 * 9 7 6 24 24 C 1.54264 * 110.03439 * 66.55898 * 4 3 2 25 25 C 1.54961 * 104.15907 * 95.75402 * 24 4 3 26 26 C 1.54889 * 102.77906 * 37.88778 * 25 24 4 27 27 C 1.53878 * 110.03048 * 183.77764 * 4 3 2 28 28 H 1.07998 * 119.99930 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99594 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99930 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47333 * 5.00874 * 3 2 1 32 32 H 1.09000 * 109.47227 * 245.00148 * 3 2 1 33 33 H 1.08996 * 109.46917 * 175.12319 * 5 4 3 34 34 H 1.09002 * 109.46722 * 55.12029 * 5 4 3 35 35 H 0.97001 * 120.00267 * 4.98031 * 6 5 4 36 36 H 1.08997 * 109.63343 * 111.44927 * 10 9 7 37 37 H 1.09010 * 109.62322 * 350.86932 * 10 9 7 38 38 H 1.09006 * 109.48976 * 186.20739 * 11 10 9 39 39 H 1.09001 * 109.49756 * 66.13036 * 11 10 9 40 40 H 1.09003 * 109.46964 * 289.99721 * 13 12 11 41 41 H 1.08995 * 109.47308 * 50.00446 * 13 12 11 42 42 H 0.97000 * 120.00359 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.49216 * 56.85031 * 22 12 11 44 44 H 1.09000 * 109.49680 * 176.90435 * 22 12 11 45 45 H 1.08999 * 109.62826 * 9.12965 * 23 9 7 46 46 H 1.09001 * 109.63328 * 248.55170 * 23 9 7 47 47 H 1.09007 * 110.48332 * 214.39824 * 24 4 3 48 48 H 1.08997 * 110.48696 * 337.04181 * 24 4 3 49 49 H 1.09000 * 110.72459 * 279.57398 * 25 24 4 50 50 H 1.09000 * 110.76781 * 156.21928 * 25 24 4 51 51 H 1.09004 * 110.48904 * 203.40217 * 26 25 24 52 52 H 1.09007 * 110.48682 * 80.76008 * 26 25 24 53 53 H 1.09001 * 110.03379 * 359.94944 * 27 4 3 54 54 H 1.09003 * 110.02926 * 121.37887 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 2.2808 1.0686 2.4863 6 7 1.3400 2.1633 2.7369 7 6 0.6352 2.1965 3.8851 8 8 0.8447 1.3693 4.7512 9 7 -0.3021 3.1465 4.0733 10 6 -0.4924 4.2244 3.0909 11 6 -0.4672 5.5665 3.8298 12 7 -1.4507 5.5398 4.9207 13 6 -1.5808 6.8633 5.5447 14 6 -2.7600 6.8624 6.4831 15 1 -3.3531 5.9680 6.6042 16 6 -3.0810 8.0031 7.1880 17 7 -4.1097 8.0022 8.0073 18 14 -2.0538 9.5494 6.9802 19 1 -2.6145 10.3717 5.8781 20 1 -2.0760 10.3317 8.2422 21 1 -0.6543 9.1741 6.6551 22 6 -1.1107 4.5179 5.9197 23 6 -1.1621 3.1327 5.2663 24 6 4.1377 0.2722 0.9843 25 6 5.3124 1.0598 0.3511 26 6 5.2524 2.4188 1.0917 27 6 3.7434 2.6974 1.2495 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6213 1.4027 -0.9314 33 1 2.9915 1.0044 3.3102 34 1 1.7326 0.1300 2.4052 35 1 1.2246 2.8644 2.0765 36 1 -1.4531 4.0993 2.5914 37 1 0.3121 4.1960 2.3558 38 1 -0.7163 6.3689 3.1352 39 1 0.5277 5.7368 4.2411 40 1 -0.6728 7.0929 6.1024 41 1 -1.7325 7.6163 4.7714 42 1 -4.3358 8.8048 8.5029 43 1 -0.1068 4.7027 6.3019 44 1 -1.8261 4.5599 6.7410 45 1 -0.8006 2.3825 5.9697 46 1 -2.1873 2.9025 4.9761 47 1 4.4356 -0.1512 1.9436 48 1 3.7957 -0.5124 0.3095 49 1 5.1536 1.1956 -0.7187 50 1 6.2612 0.5579 0.5412 51 1 5.7242 3.1996 0.4951 52 1 5.7304 2.3425 2.0684 53 1 3.3956 3.3394 0.4401 54 1 3.5497 3.1711 2.2119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601604947.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:50 Heat of formation + Delta-G solvation = -26.477093 kcal Electronic energy + Delta-G solvation = -30279.334398 eV Core-core repulsion = 26443.398720 eV Total energy + Delta-G solvation = -3835.935678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.63739 -40.32495 -39.01229 -35.99779 -35.73629 -35.03986 -34.36575 -32.18635 -31.17298 -30.28915 -29.60243 -27.73596 -26.90093 -25.21893 -24.44104 -23.54543 -22.32784 -21.75528 -20.59642 -20.51738 -19.63041 -19.06494 -18.79312 -17.35248 -17.10686 -16.59931 -16.52883 -16.16349 -16.04927 -15.79836 -15.57738 -15.34366 -15.22557 -14.91045 -14.85820 -14.66086 -14.46058 -14.10158 -13.77623 -13.63465 -13.23640 -13.19343 -12.94204 -12.86485 -12.51406 -12.43708 -12.31785 -12.23936 -11.96902 -11.92345 -11.86965 -11.83546 -11.65920 -11.49275 -11.44170 -11.38309 -11.32783 -11.16955 -10.77344 -10.23728 -10.07496 -9.57959 -9.05567 -8.27517 -6.31141 1.35105 1.37156 1.46970 1.47379 1.61103 2.11091 2.34691 2.89167 3.04536 3.14159 3.58368 3.61267 3.74539 3.93482 4.04527 4.10411 4.17454 4.22918 4.24293 4.32806 4.39547 4.40929 4.51586 4.53151 4.55749 4.62765 4.69179 4.80548 4.81923 4.82557 4.84405 4.93796 4.94861 4.97956 5.00367 5.03836 5.11161 5.11873 5.13723 5.14671 5.28493 5.39099 5.42372 5.46479 5.52091 5.52573 5.56209 5.82564 5.85831 5.95730 6.01977 6.27038 6.61685 6.75469 6.94782 7.32379 7.52679 8.88871 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.002462 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.312740 B =11372.307531 C =11949.581629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.077 4.077 4 C -0.057 4.057 5 C 0.154 3.846 6 N -0.725 5.725 7 C 0.704 3.296 8 O -0.638 6.638 9 N -0.628 5.628 10 C 0.125 3.875 11 C 0.035 3.965 12 N -0.537 5.537 13 C 0.173 3.827 14 C -0.517 4.517 15 H 0.040 0.960 16 C 0.007 3.993 17 N -0.948 5.948 18 Si 0.948 3.052 19 H -0.261 1.261 20 H -0.285 1.285 21 H -0.254 1.254 22 C 0.059 3.941 23 C 0.145 3.855 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.121 4.121 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.406 0.594 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.026 0.974 40 H -0.017 1.017 41 H 0.037 0.963 42 H 0.266 0.734 43 H 0.016 0.984 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.070 0.930 51 H 0.073 0.927 52 H 0.055 0.945 53 H 0.082 0.918 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.360 -13.237 -22.882 32.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.170 4.170 3 C -0.114 4.114 4 C -0.058 4.058 5 C 0.030 3.970 6 N -0.383 5.383 7 C 0.405 3.595 8 O -0.520 6.520 9 N -0.365 5.365 10 C 0.002 3.998 11 C -0.094 4.094 12 N -0.262 5.262 13 C 0.046 3.954 14 C -0.555 4.555 15 H 0.059 0.941 16 C -0.190 4.190 17 N -0.588 5.588 18 Si 0.771 3.229 19 H -0.186 1.186 20 H -0.211 1.211 21 H -0.177 1.177 22 C -0.071 4.071 23 C 0.022 3.978 24 C -0.152 4.152 25 C -0.156 4.156 26 C -0.163 4.163 27 C -0.159 4.159 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.245 0.755 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.044 0.956 40 H 0.000 1.000 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.034 0.966 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.096 0.904 50 H 0.088 0.912 51 H 0.091 0.909 52 H 0.074 0.926 53 H 0.100 0.900 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.962 -13.862 -22.373 32.438 hybrid contribution 0.392 1.254 1.005 1.655 sum 19.354 -12.607 -21.368 31.466 Atomic orbital electron populations 1.23905 0.96451 1.01828 1.01841 1.23019 0.95772 0.99073 0.99183 1.20864 0.97286 0.95239 0.97983 1.21369 0.95047 0.96733 0.92649 1.21342 0.90380 0.88612 0.96707 1.45093 1.44647 1.29666 1.18928 1.15990 0.79266 0.81282 0.82925 1.90861 1.71786 1.44028 1.45316 1.47374 1.36613 1.27954 1.24542 1.21860 1.03477 0.84271 0.90184 1.22602 0.93333 0.98808 0.94608 1.61803 1.46700 1.06184 1.11474 1.19938 0.94205 0.87695 0.93582 1.21260 1.12427 0.98392 1.23419 0.94148 1.25847 0.96229 1.02433 0.94484 1.70048 1.29444 1.30215 1.29116 0.85712 0.80027 0.79056 0.78092 1.18573 1.21109 1.17744 1.22237 0.98217 0.91619 0.94983 1.21427 0.93948 0.95958 0.86510 1.22473 0.94295 0.97129 1.01266 1.22481 0.98004 0.95105 1.00006 1.22349 0.95583 0.98012 1.00328 1.22328 0.95641 0.95779 1.02105 0.88871 0.88817 0.86775 0.91315 0.89073 0.93428 0.92662 0.75535 0.89595 0.87403 0.88084 0.95613 0.99971 0.94456 0.92465 0.96574 0.91067 0.89952 0.90757 0.91969 0.90070 0.90415 0.91160 0.90867 0.92621 0.89964 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.93 14.32 67.77 0.97 -1.96 16 2 C -0.15 -1.86 7.46 25.64 0.19 -1.67 16 3 C -0.08 -0.75 4.28 29.85 0.13 -0.62 16 4 C -0.06 -0.66 0.41 -51.45 -0.02 -0.68 16 5 C 0.15 2.88 4.15 86.38 0.36 3.24 16 6 N -0.73 -14.88 4.64 -478.54 -2.22 -17.10 16 7 C 0.70 21.02 8.30 179.06 1.49 22.51 16 8 O -0.64 -24.65 15.78 -3.98 -0.06 -24.71 16 9 N -0.63 -18.18 3.01 -835.95 -2.52 -20.70 16 10 C 0.12 2.82 6.54 86.35 0.56 3.38 16 11 C 0.04 1.02 5.62 86.38 0.49 1.50 16 12 N -0.54 -21.21 4.62 -899.82 -4.16 -25.36 16 13 C 0.17 8.03 3.79 85.56 0.32 8.36 16 14 C -0.52 -29.40 8.96 25.60 0.23 -29.17 16 15 H 0.04 2.57 7.37 -2.91 -0.02 2.54 16 16 C 0.01 0.43 5.47 84.66 0.46 0.89 16 17 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 18 Si 0.95 43.41 27.47 68.60 1.88 45.30 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 22 C 0.06 2.31 5.46 86.38 0.47 2.78 16 23 C 0.15 4.92 6.61 86.35 0.57 5.49 16 24 C -0.11 -1.15 5.75 31.69 0.18 -0.97 16 25 C -0.12 -0.99 6.91 31.91 0.22 -0.77 16 26 C -0.13 -1.28 6.83 31.67 0.22 -1.06 16 27 C -0.12 -1.34 5.48 31.32 0.17 -1.16 16 28 H 0.09 1.35 7.84 -2.91 -0.02 1.33 16 29 H 0.09 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.11 1.23 7.04 -2.91 -0.02 1.21 16 31 H 0.07 0.65 6.90 -2.39 -0.02 0.64 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 1.09 8.00 -2.39 -0.02 1.07 16 34 H 0.06 1.17 6.93 -2.39 -0.02 1.15 16 35 H 0.41 6.14 4.65 -92.71 -0.43 5.71 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.11 1.58 5.74 -2.38 -0.01 1.57 16 38 H 0.10 2.54 7.99 -2.38 -0.02 2.52 16 39 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 40 H -0.02 -0.83 7.18 -2.39 -0.02 -0.84 16 41 H 0.04 1.65 7.40 -2.39 -0.02 1.64 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 3.22 6.67 -2.39 -0.02 3.20 16 45 H 0.08 2.93 7.04 -2.39 -0.02 2.91 16 46 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.06 0.75 7.79 -2.38 -0.02 0.73 16 48 H 0.08 0.68 6.49 -2.39 -0.02 0.67 16 49 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 50 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 51 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 52 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 53 H 0.08 0.68 7.67 -2.39 -0.02 0.67 16 54 H 0.05 0.80 7.24 -2.39 -0.02 0.79 16 Total: -1.00 -72.73 406.13 0.62 -72.11 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.38 Total: 19.03 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 7.01 Total: 10.09 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -8.59 Total: -121.81 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.06 Total: -24.71 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.30 kcal Total: -72.73 0.62 -72.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601604947.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.633 kcal (2) G-P(sol) polarization free energy of solvation -72.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds