Wall clock time and date at job start Tue Mar 31 2020 19:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.46778 * 2 1 4 4 C 1.52999 * 109.46950 * 240.00279 * 2 1 3 5 5 N 1.46500 * 109.47555 * 59.99977 * 4 2 1 6 6 C 1.34768 * 120.00087 * 180.02562 * 5 4 2 7 7 O 1.21592 * 120.00289 * 354.91964 * 6 5 4 8 8 N 1.34777 * 120.00074 * 174.91473 * 6 5 4 9 9 C 1.47082 * 120.88544 * 184.71293 * 8 6 5 10 10 C 1.53691 * 108.27458 * 128.75714 * 9 8 6 11 11 N 1.46895 * 109.25910 * 54.08751 * 10 9 8 12 12 C 1.46904 * 111.00191 * 172.60550 * 11 10 9 13 13 C 1.50694 * 109.47105 * 294.29948 * 12 11 10 14 14 H 1.08001 * 120.00211 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00149 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99777 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00146 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47158 * 90.00237 * 17 15 13 19 19 H 1.48499 * 109.47369 * 210.00337 * 17 15 13 20 20 H 1.48504 * 109.47254 * 330.00284 * 17 15 13 21 21 C 1.46903 * 111.27027 * 296.75627 * 11 10 9 22 22 C 1.47082 * 120.87915 * 4.99951 * 8 6 5 23 23 C 1.50702 * 109.46998 * 119.99913 * 2 1 3 24 24 C 1.30524 * 124.44453 * 119.97877 * 23 2 1 25 25 C 1.51100 * 111.10267 * 180.26453 * 24 23 2 26 26 C 1.54797 * 104.64544 * 343.19758 * 25 24 23 27 27 C 1.51099 * 124.44964 * 299.99899 * 23 2 1 28 28 H 1.08994 * 109.47226 * 299.99924 * 1 2 3 29 29 H 1.09002 * 109.47505 * 60.00101 * 1 2 3 30 30 H 1.09003 * 109.46567 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47211 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47476 * 299.99918 * 3 2 1 33 33 H 1.09004 * 109.47174 * 60.00053 * 3 2 1 34 34 H 1.08998 * 109.46840 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.46865 * 299.99356 * 4 2 1 36 36 H 0.97003 * 119.99717 * 359.97438 * 5 4 2 37 37 H 1.08996 * 109.62809 * 248.52999 * 9 8 6 38 38 H 1.09001 * 109.62467 * 9.10869 * 9 8 6 39 39 H 1.08999 * 109.65060 * 294.08164 * 10 9 8 40 40 H 1.09005 * 109.42294 * 173.95342 * 10 9 8 41 41 H 1.09001 * 109.46860 * 54.30495 * 12 11 10 42 42 H 1.09000 * 109.47088 * 174.30176 * 12 11 10 43 43 H 0.97002 * 119.99867 * 179.97438 * 16 15 13 44 44 H 1.09006 * 109.48657 * 303.14114 * 21 11 10 45 45 H 1.08999 * 109.49719 * 183.06426 * 21 11 10 46 46 H 1.09004 * 109.62965 * 350.89083 * 22 8 6 47 47 H 1.08996 * 109.63185 * 111.47284 * 22 8 6 48 48 H 1.08002 * 124.45109 * 359.97438 * 24 23 2 49 49 H 1.09004 * 110.38786 * 102.13016 * 25 24 23 50 50 H 1.09004 * 110.38538 * 224.50498 * 25 24 23 51 51 H 1.09004 * 111.24953 * 266.87522 * 26 25 24 52 52 H 1.08998 * 110.89787 * 142.88489 * 26 25 24 53 53 H 1.09000 * 110.38725 * 315.22924 * 27 23 2 54 54 H 1.09001 * 110.38570 * 77.48973 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5517 -0.0306 -2.4455 6 6 1.8769 -0.4913 -3.6695 7 8 2.6495 -1.4233 -3.7829 8 7 1.3455 0.0809 -4.7680 9 6 1.6051 -0.4700 -6.1068 10 6 0.2568 -0.6604 -6.8194 11 7 -0.4832 0.6084 -6.8033 12 6 -1.6984 0.5196 -7.6240 13 6 -1.3156 0.3377 -9.0702 14 1 -0.2739 0.2921 -9.3515 15 6 -2.2954 0.2283 -10.0341 16 7 -3.5639 0.2834 -9.6915 17 14 -1.8210 0.0021 -11.8266 18 1 -1.7092 -1.4473 -12.1299 19 1 -2.8609 0.6107 -12.6946 20 1 -0.5155 0.6630 -12.0804 21 6 -0.8042 1.0208 -5.4304 22 6 0.4958 1.2766 -4.6603 23 6 2.0324 -0.7104 1.2305 24 6 2.7855 -1.7763 1.2119 25 6 3.1060 -2.2405 2.6136 26 6 2.7732 -1.0260 3.5138 27 6 1.7299 -0.2826 2.6478 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 -0.7216 -1.2490 35 1 1.6767 -1.7489 -1.2492 36 1 0.9937 0.7579 -2.3564 37 1 2.2276 0.2226 -6.6733 38 1 2.1115 -1.4309 -6.0155 39 1 -0.3240 -1.4267 -6.3060 40 1 0.4319 -0.9663 -7.8509 41 1 -2.2966 -0.3307 -7.2966 42 1 -2.2787 1.4358 -7.5143 43 1 -4.2532 0.2068 -10.3697 44 1 -1.3703 0.2310 -4.9364 45 1 -1.3984 1.9342 -5.4544 46 1 0.2682 1.4709 -3.6122 47 1 1.0135 2.1338 -5.0905 48 1 3.1303 -2.2651 0.3126 49 1 2.4859 -3.0961 2.8813 50 1 4.1626 -2.4953 2.6969 51 1 3.6539 -0.4066 3.6831 52 1 2.3375 -1.3504 4.4588 53 1 1.8486 0.7958 2.7524 54 1 0.7196 -0.5815 2.9272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601616152.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:37 Heat of formation + Delta-G solvation = -27.929816 kcal Electronic energy + Delta-G solvation = -29725.735514 eV Core-core repulsion = 25889.736841 eV Total energy + Delta-G solvation = -3835.998673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.62399 -40.36219 -39.08544 -37.29844 -35.99165 -34.55228 -34.02221 -32.00833 -30.13862 -29.90038 -28.58911 -28.16872 -27.58366 -26.68212 -24.56318 -23.95082 -22.48975 -21.72943 -21.29355 -20.71315 -19.39129 -18.50463 -18.16215 -17.43452 -16.83302 -16.70709 -16.52723 -16.31871 -16.00992 -15.85587 -15.43695 -15.28790 -15.18537 -15.10414 -14.50050 -14.33835 -14.03650 -13.93027 -13.72337 -13.53627 -13.27784 -13.08539 -12.89953 -12.76704 -12.73977 -12.58563 -12.51758 -12.37774 -12.31910 -12.18239 -12.15301 -11.92932 -11.82872 -11.75330 -11.65143 -11.53907 -11.38032 -11.16639 -10.61832 -10.28449 -9.60858 -9.56410 -9.04439 -8.20608 -6.30116 1.30456 1.42763 1.43138 1.54769 1.56884 2.07693 2.40801 2.83962 3.11766 3.22303 3.50118 3.59637 3.92579 3.94466 3.95943 4.04479 4.09697 4.13423 4.23591 4.24728 4.27358 4.43057 4.53007 4.57964 4.63503 4.65674 4.71079 4.80538 4.81429 4.85061 4.90403 4.93936 4.94338 4.96990 5.01151 5.02021 5.05882 5.09676 5.17126 5.22551 5.25299 5.26518 5.37747 5.41974 5.43416 5.47416 5.64167 5.70938 5.89780 6.01379 6.03659 6.25467 6.58245 6.85352 6.90212 7.39542 7.48320 8.90397 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.029228 B = 0.002023 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.744825 B =13840.739952 C =14216.994476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.020 4.020 3 C -0.136 4.136 4 C 0.153 3.847 5 N -0.730 5.730 6 C 0.704 3.296 7 O -0.635 6.635 8 N -0.628 5.628 9 C 0.146 3.854 10 C 0.057 3.943 11 N -0.537 5.537 12 C 0.209 3.791 13 C -0.523 4.523 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.038 3.962 22 C 0.127 3.873 23 C -0.121 4.121 24 C -0.187 4.187 25 C -0.100 4.100 26 C -0.122 4.122 27 C -0.088 4.088 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.407 0.593 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.009 0.991 40 H 0.080 0.920 41 H -0.042 1.042 42 H 0.012 0.988 43 H 0.264 0.736 44 H 0.018 0.982 45 H 0.091 0.909 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.112 0.888 49 H 0.076 0.924 50 H 0.071 0.929 51 H 0.073 0.927 52 H 0.083 0.917 53 H 0.080 0.920 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.935 2.621 27.450 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.020 4.020 3 C -0.194 4.194 4 C 0.029 3.971 5 N -0.389 5.389 6 C 0.406 3.594 7 O -0.517 6.517 8 N -0.365 5.365 9 C 0.022 3.978 10 C -0.072 4.072 11 N -0.262 5.262 12 C 0.082 3.918 13 C -0.561 4.561 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.793 3.207 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.188 1.188 21 C -0.092 4.092 22 C 0.004 3.996 23 C -0.121 4.121 24 C -0.205 4.205 25 C -0.137 4.137 26 C -0.160 4.160 27 C -0.125 4.125 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.247 0.753 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.027 0.973 40 H 0.098 0.902 41 H -0.024 1.024 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.037 0.963 45 H 0.109 0.891 46 H 0.125 0.875 47 H 0.107 0.893 48 H 0.130 0.870 49 H 0.094 0.906 50 H 0.089 0.911 51 H 0.092 0.908 52 H 0.101 0.899 53 H 0.098 0.902 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.601 2.313 27.129 29.596 hybrid contribution -1.077 -0.832 -1.026 1.704 sum 10.524 1.480 26.103 28.184 Atomic orbital electron populations 1.21851 0.92616 1.02099 1.02969 1.19467 0.96511 0.95916 0.90113 1.21843 1.01161 0.93337 1.03026 1.21222 0.98295 0.95082 0.82502 1.45148 1.56628 1.33719 1.03404 1.15970 0.80480 0.81780 0.81219 1.90861 1.41038 1.33479 1.86319 1.47409 1.52440 1.31178 1.05483 1.21584 0.95674 0.99825 0.80721 1.22365 0.94109 0.90130 1.00587 1.61997 1.23900 1.30114 1.10186 1.19378 0.86368 0.93742 0.92265 1.21468 0.93340 1.49009 0.92294 0.91645 1.25895 0.94770 0.95014 1.03974 1.70080 1.00425 1.51562 1.35359 0.85397 0.78219 0.78316 0.78778 1.20143 1.20829 1.18756 1.22529 0.97025 1.00586 0.89012 1.21851 0.89710 0.87154 1.00873 1.21838 0.98349 0.96757 0.95186 1.23324 1.00508 0.97999 0.98632 1.21380 1.01726 0.98770 0.91826 1.22484 0.99052 0.96254 0.98165 1.21274 0.99800 1.01144 0.90301 0.90419 0.92016 0.93307 0.92837 0.91805 0.90457 0.92638 0.93301 0.75308 0.90224 0.89783 0.97305 0.90154 1.02449 0.96957 0.92733 0.96338 0.89074 0.87543 0.89313 0.87033 0.90592 0.91072 0.90822 0.89853 0.90161 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.20 71.98 0.59 -1.19 16 2 C -0.02 -0.28 0.71 -52.93 -0.04 -0.32 16 3 C -0.14 -1.57 8.17 71.98 0.59 -0.98 16 4 C 0.15 3.16 3.38 86.38 0.29 3.46 16 5 N -0.73 -16.06 4.87 -478.54 -2.33 -18.39 16 6 C 0.70 21.60 8.31 179.06 1.49 23.09 16 7 O -0.64 -24.59 15.83 -4.01 -0.06 -24.65 16 8 N -0.63 -18.67 3.00 -835.04 -2.51 -21.17 16 9 C 0.15 4.83 6.61 86.50 0.57 5.40 16 10 C 0.06 2.26 5.47 86.54 0.47 2.73 16 11 N -0.54 -22.29 4.62 -898.88 -4.15 -26.44 16 12 C 0.21 10.86 4.72 85.55 0.40 11.27 16 13 C -0.52 -29.07 8.41 25.60 0.22 -28.86 16 14 H 0.07 3.55 7.13 -2.91 -0.02 3.53 16 15 C 0.00 0.09 5.46 84.65 0.46 0.55 16 16 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 17 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 21 C 0.04 1.21 5.62 86.38 0.49 1.70 16 22 C 0.13 3.07 6.59 86.35 0.57 3.64 16 23 C -0.12 -1.72 4.77 -15.87 -0.08 -1.80 16 24 C -0.19 -3.02 9.71 26.26 0.26 -2.76 16 25 C -0.10 -1.26 6.82 30.59 0.21 -1.05 16 26 C -0.12 -1.19 7.20 31.76 0.23 -0.96 16 27 C -0.09 -0.92 6.39 30.53 0.20 -0.73 16 28 H 0.08 0.77 8.01 -2.39 -0.02 0.75 16 29 H 0.06 0.75 6.86 -2.39 -0.02 0.74 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.66 6.86 -2.39 -0.02 0.65 16 33 H 0.08 0.67 7.42 -2.39 -0.02 0.65 16 34 H 0.06 1.29 7.78 -2.39 -0.02 1.27 16 35 H 0.05 1.18 7.78 -2.39 -0.02 1.16 16 36 H 0.41 6.73 3.66 -92.71 -0.34 6.39 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.08 2.88 7.09 -2.39 -0.02 2.87 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.08 3.40 6.67 -2.38 -0.02 3.38 16 41 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 42 H 0.01 0.68 7.97 -2.39 -0.02 0.66 16 43 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 45 H 0.09 2.75 7.99 -2.39 -0.02 2.74 16 46 H 0.11 1.75 5.63 -2.39 -0.01 1.73 16 47 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.11 2.08 6.77 -2.91 -0.02 2.06 16 49 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 50 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 53 H 0.08 0.69 7.39 -2.39 -0.02 0.67 16 54 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -70.23 410.02 0.70 -69.54 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.53 Total: 17.30 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.91 Total: 13.19 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -8.71 Total: -121.33 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.06 Total: -24.65 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -70.23 0.70 -69.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601616152.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.607 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds