Wall clock time and date at job start Tue Mar 31 2020 19:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.03417 * 2 1 4 4 C 1.54495 * 110.00774 * 238.90395 * 2 1 3 5 5 C 1.55956 * 102.74103 * 218.13039 * 4 2 1 6 6 H 1.08997 * 113.40345 * 156.88638 * 5 4 2 7 7 C 1.53010 * 106.58466 * 281.12239 * 5 4 2 8 8 C 1.52679 * 110.69538 * 163.13602 * 7 5 4 9 9 C 1.53236 * 108.67671 * 298.03985 * 8 7 5 10 10 C 1.52866 * 108.42154 * 63.19667 * 9 8 7 11 11 C 1.51187 * 111.24224 * 300.78701 * 10 9 8 12 12 H 1.08999 * 108.58142 * 173.19682 * 11 10 9 13 13 N 1.46516 * 113.00507 * 293.60594 * 11 10 9 14 14 C 1.34777 * 126.02390 * 329.78205 * 13 11 10 15 15 O 1.21593 * 119.99486 * 0.02562 * 14 13 11 16 16 N 1.34781 * 120.00518 * 180.02562 * 14 13 11 17 17 C 1.46501 * 120.00101 * 179.97438 * 16 14 13 18 18 C 1.53035 * 109.46025 * 275.06550 * 17 16 14 19 19 C 1.53193 * 109.31244 * 178.61506 * 18 17 16 20 20 N 1.46917 * 108.77442 * 54.63520 * 19 18 17 21 21 C 1.36940 * 120.63220 * 126.36878 * 20 19 18 22 22 H 1.07997 * 120.00366 * 207.69663 * 21 20 19 23 23 C 1.38816 * 119.99593 * 27.69134 * 21 20 19 24 24 N 1.31618 * 120.00055 * 17.36563 * 23 21 20 25 25 Si 1.86801 * 119.99863 * 197.36104 * 23 21 20 26 26 H 1.48506 * 109.47039 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46956 * 120.00406 * 25 23 21 28 28 H 1.48506 * 109.47254 * 240.00315 * 25 23 21 29 29 C 1.46930 * 118.74161 * 306.39195 * 20 19 18 30 30 C 1.53037 * 109.45746 * 154.99610 * 17 16 14 31 31 H 1.09009 * 109.46544 * 300.30158 * 1 2 3 32 32 H 1.09004 * 109.47201 * 60.29731 * 1 2 3 33 33 H 1.08994 * 109.47463 * 180.30133 * 1 2 3 34 34 H 1.09001 * 110.90529 * 99.73570 * 4 2 1 35 35 H 1.09005 * 110.56447 * 336.37112 * 4 2 1 36 36 H 1.09005 * 109.23086 * 42.82469 * 7 5 4 37 37 H 1.09002 * 109.23041 * 283.45443 * 7 5 4 38 38 H 1.09004 * 109.59775 * 178.27953 * 8 7 5 39 39 H 1.08995 * 109.73400 * 57.88355 * 8 7 5 40 40 H 1.09001 * 109.67855 * 303.46207 * 9 8 7 41 41 H 1.09006 * 109.70806 * 182.94487 * 9 8 7 42 42 H 1.08992 * 109.12919 * 180.33099 * 10 9 8 43 43 H 1.09003 * 109.12585 * 61.23549 * 10 9 8 44 44 H 0.96995 * 119.99420 * 359.97438 * 16 14 13 45 45 H 1.09004 * 109.45740 * 35.02551 * 17 16 14 46 46 H 1.08998 * 109.49819 * 298.56739 * 18 17 16 47 47 H 1.09007 * 109.49939 * 58.66302 * 18 17 16 48 48 H 1.09006 * 109.58560 * 294.84793 * 19 18 17 49 49 H 1.08997 * 109.58569 * 174.42512 * 19 18 17 50 50 H 0.97003 * 119.99811 * 179.97438 * 24 23 21 51 51 H 1.09007 * 109.58366 * 293.82050 * 29 20 19 52 52 H 1.08995 * 109.58947 * 173.39732 * 29 20 19 53 53 H 1.08996 * 109.50007 * 301.34121 * 30 17 16 54 54 H 1.08995 * 109.49768 * 61.40343 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9034 1.0240 0.0000 4 6 2.0586 -0.7498 -1.2431 5 6 3.3006 -1.5095 -0.6842 6 1 3.5746 -2.3842 -1.2740 7 6 4.4350 -0.4865 -0.5957 8 6 5.5532 -0.9977 0.3095 9 6 4.9912 -1.1922 1.7217 10 6 3.9084 -2.2699 1.6666 11 6 2.7943 -1.8791 0.7223 12 1 2.1116 -2.7229 0.6225 13 7 2.0318 -0.7170 1.1860 14 6 1.8214 -0.3684 2.4708 15 8 2.2848 -1.0455 3.3681 16 7 1.0972 0.7307 2.7610 17 6 0.8681 1.1093 4.1575 18 6 -0.3420 0.3460 4.7007 19 6 -0.5576 0.7182 6.1710 20 7 -0.6683 2.1793 6.2775 21 6 -1.7458 2.7541 6.8972 22 1 -2.0694 3.7436 6.6102 23 6 -2.4220 2.0647 7.8945 24 7 -1.8534 1.0341 8.4836 25 14 -4.1388 2.5996 8.4002 26 1 -4.5493 3.7754 7.5913 27 1 -5.0923 1.4844 8.1712 28 1 -4.1398 2.9640 9.8399 29 6 0.3986 3.0123 5.7059 30 6 0.6035 2.6143 4.2409 31 1 -0.3633 0.5186 0.8874 32 1 -0.3634 0.5092 -0.8927 33 1 -0.3634 -1.0276 0.0054 34 1 2.3535 -0.0487 -2.0239 35 1 1.3110 -1.4511 -1.6139 36 1 4.0451 0.4479 -0.1918 37 1 4.8347 -0.3064 -1.5936 38 1 6.3642 -0.2698 0.3355 39 1 5.9276 -1.9487 -0.0694 40 1 4.5598 -0.2564 2.0772 41 1 5.7888 -1.5075 2.3946 42 1 3.4962 -2.4134 2.6653 43 1 4.3527 -3.2055 1.3268 44 1 0.7279 1.2710 2.0451 45 1 1.7490 0.8621 4.7500 46 1 -1.2283 0.6115 4.1245 47 1 -0.1624 -0.7261 4.6194 48 1 0.2892 0.3718 6.7636 49 1 -1.4746 0.2547 6.5346 50 1 -2.3259 0.5526 9.1807 51 1 1.3233 2.8530 6.2607 52 1 0.1124 4.0625 5.7627 53 1 1.4560 3.1568 3.8323 54 1 -0.2914 2.8586 3.6685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610707180.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:36 Heat of formation + Delta-G solvation = -34.722754 kcal Electronic energy + Delta-G solvation = -31397.135828 eV Core-core repulsion = 27560.842591 eV Total energy + Delta-G solvation = -3836.293237 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.09442 -40.11626 -38.69473 -36.74907 -35.87529 -33.89521 -33.29532 -31.96578 -31.60625 -31.16276 -30.07516 -26.90061 -26.74347 -24.46095 -23.92680 -23.49268 -22.97022 -22.31342 -21.22762 -20.86793 -20.00394 -18.79482 -18.24474 -17.28046 -17.01328 -16.72604 -16.04902 -15.85230 -15.60212 -15.40688 -15.36108 -15.32135 -14.93745 -14.78692 -14.66369 -14.32945 -14.05623 -13.78353 -13.45812 -13.35717 -13.18724 -13.15533 -13.02586 -12.67875 -12.66925 -12.59651 -12.50489 -12.36583 -12.20318 -12.09007 -12.02226 -11.86983 -11.69286 -11.54789 -11.39878 -11.37416 -11.21124 -10.94213 -10.59852 -10.51348 -10.05515 -9.38808 -8.73419 -7.88097 -5.34287 1.46251 1.47835 1.58942 1.65471 2.22674 2.50905 2.96281 3.27991 3.55415 3.60198 3.65667 3.80483 3.86189 4.02557 4.08169 4.09901 4.21010 4.32024 4.34315 4.35766 4.45361 4.47748 4.55160 4.59254 4.64939 4.65746 4.69186 4.77546 4.80802 4.85885 4.89976 5.02141 5.03152 5.05939 5.07713 5.10050 5.13166 5.17188 5.25834 5.29080 5.31066 5.34753 5.36942 5.40199 5.44090 5.53721 5.62024 5.65918 5.68707 5.73754 6.19726 6.37388 7.08431 7.12121 7.68927 7.82919 8.36130 9.19210 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.022606 B = 0.002749 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.315295 B =10181.547696 C =10534.824117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.119 3.881 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.088 4.088 6 H 0.121 0.879 7 C -0.107 4.107 8 C -0.115 4.115 9 C -0.105 4.105 10 C -0.134 4.134 11 C 0.156 3.844 12 H 0.052 0.948 13 N -0.623 5.623 14 C 0.717 3.283 15 O -0.626 6.626 16 N -0.728 5.728 17 C 0.182 3.818 18 C -0.127 4.127 19 C 0.185 3.815 20 N -0.609 5.609 21 C -0.260 4.260 22 H 0.075 0.925 23 C -0.056 4.056 24 N -0.939 5.939 25 Si 0.970 3.030 26 H -0.261 1.261 27 H -0.292 1.292 28 H -0.293 1.293 29 C 0.143 3.857 30 C -0.120 4.120 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.404 0.596 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.040 0.960 48 H -0.013 1.013 49 H 0.055 0.945 50 H 0.249 0.751 51 H 0.011 0.989 52 H 0.069 0.931 53 H 0.088 0.912 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.276 -2.531 -27.632 29.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 H 0.098 0.902 4 C -0.151 4.151 5 C -0.107 4.107 6 H 0.139 0.861 7 C -0.145 4.145 8 C -0.152 4.152 9 C -0.143 4.143 10 C -0.171 4.171 11 C 0.053 3.947 12 H 0.070 0.930 13 N -0.361 5.361 14 C 0.419 3.581 15 O -0.507 6.507 16 N -0.385 5.385 17 C 0.077 3.923 18 C -0.167 4.167 19 C 0.058 3.942 20 N -0.333 5.333 21 C -0.390 4.390 22 H 0.093 0.907 23 C -0.251 4.251 24 N -0.585 5.585 25 Si 0.798 3.202 26 H -0.185 1.185 27 H -0.219 1.219 28 H -0.220 1.220 29 C 0.017 3.983 30 C -0.160 4.160 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.242 0.758 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.059 0.941 48 H 0.005 0.995 49 H 0.073 0.927 50 H 0.058 0.942 51 H 0.029 0.971 52 H 0.088 0.912 53 H 0.106 0.894 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.530 -3.042 -26.785 29.319 hybrid contribution -1.142 0.035 1.222 1.673 sum 10.388 -3.007 -25.563 27.756 Atomic orbital electron populations 1.22282 0.94638 1.02499 1.02967 1.21974 0.94332 0.96839 0.85214 0.90205 1.22972 0.97001 0.99765 0.95360 1.22489 0.95300 0.99594 0.93292 0.86096 1.21500 0.94908 0.97709 1.00339 1.21520 0.97829 1.01920 0.93925 1.21337 0.97236 0.97845 0.97897 1.21458 0.95965 0.99071 1.00642 1.21005 0.92267 0.87112 0.94350 0.93010 1.47527 1.55591 1.30061 1.02926 1.15685 0.79092 0.81254 0.82079 1.90836 1.57684 1.55550 1.46672 1.45368 1.56696 1.27885 1.08509 1.20465 0.96330 0.94873 0.80644 1.22288 0.98020 0.98330 0.98081 1.20442 0.98336 0.84261 0.91135 1.44361 1.21809 1.01342 1.65750 1.19613 1.04901 1.02061 1.12465 0.90742 1.25888 1.03221 0.99408 0.96560 1.70228 1.37572 1.24228 1.26463 0.85171 0.79941 0.77770 0.77338 1.18511 1.21940 1.22028 1.21028 0.90247 0.95218 0.91799 1.22126 1.02396 0.93132 0.98312 0.93636 0.88643 0.92838 0.87497 0.89508 0.93207 0.89593 0.91885 0.90587 0.95132 0.93103 0.92290 0.90202 0.75828 0.92924 0.92355 0.94114 0.99453 0.92676 0.94207 0.97107 0.91211 0.89369 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 9.04 71.98 0.65 -1.78 16 2 C 0.12 1.77 2.31 45.33 0.10 1.87 16 3 H 0.08 1.09 7.83 -2.39 -0.02 1.07 16 4 C -0.11 -1.01 5.85 32.13 0.19 -0.83 16 5 C -0.09 -1.01 3.68 -9.43 -0.03 -1.05 16 6 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 7 C -0.11 -1.29 4.89 30.49 0.15 -1.14 16 8 C -0.11 -1.71 5.92 30.57 0.18 -1.53 16 9 C -0.11 -2.41 5.86 30.63 0.18 -2.23 16 10 C -0.13 -3.21 4.82 29.96 0.14 -3.06 16 11 C 0.16 3.18 2.85 44.73 0.13 3.31 16 12 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 13 N -0.62 -14.50 2.73 -788.24 -2.15 -16.65 16 14 C 0.72 23.18 7.52 179.05 1.35 24.53 16 15 O -0.63 -26.03 13.50 -4.01 -0.05 -26.09 16 16 N -0.73 -21.66 4.65 -457.68 -2.13 -23.78 16 17 C 0.18 6.67 2.42 45.02 0.11 6.78 16 18 C -0.13 -5.42 5.65 30.67 0.17 -5.25 16 19 C 0.18 9.71 5.31 86.36 0.46 10.17 16 20 N -0.61 -31.50 2.99 -699.10 -2.09 -33.59 16 21 C -0.26 -14.47 9.59 84.03 0.81 -13.67 16 22 H 0.07 3.94 7.89 -2.91 -0.02 3.92 16 23 C -0.06 -3.19 4.91 84.86 0.42 -2.77 16 24 N -0.94 -57.79 11.19 21.65 0.24 -57.55 16 25 Si 0.97 45.56 29.59 68.60 2.03 47.59 16 26 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 29 C 0.14 5.94 6.52 86.36 0.56 6.50 16 30 C -0.12 -3.92 5.55 30.67 0.17 -3.75 16 31 H 0.04 0.83 5.87 -2.38 -0.01 0.82 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 0.51 7.97 -2.39 -0.02 0.49 16 35 H 0.09 0.66 7.85 -2.38 -0.02 0.65 16 36 H 0.05 0.75 6.91 -2.38 -0.02 0.74 16 37 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.03 0.87 7.51 -2.39 -0.02 0.85 16 41 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.06 1.97 5.64 -2.39 -0.01 1.96 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.40 9.53 5.81 -92.71 -0.54 8.99 16 45 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 46 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 48 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 49 H 0.05 3.24 6.03 -2.39 -0.01 3.23 16 50 H 0.25 14.82 8.31 -92.71 -0.77 14.04 16 51 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 52 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 53 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 54 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -73.74 393.91 1.91 -71.83 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.33 Total: 22.13 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 5.73 Total: 16.11 kcal Atomic # 7 Polarization: -125.45 SS G_CDS: -6.13 Total: -131.58 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.05 Total: -26.09 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -73.74 1.91 -71.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610707180.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.112 kcal (2) G-P(sol) polarization free energy of solvation -73.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds