Wall clock time and date at job start Tue Mar 31 2020 18:44:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 N 1.40083 * 126.03137 * 2 1
4 4 C 1.30838 * 108.20398 * 179.97438 * 3 2 1
5 5 C 1.39878 * 108.20190 * 359.77897 * 4 3 2
6 6 C 1.34942 * 126.03861 * 179.97438 * 2 1 3
7 7 C 1.50694 * 126.12988 * 359.97438 * 6 2 1
8 8 H 1.08999 * 109.47161 * 331.14986 * 7 6 2
9 9 O 1.42905 * 109.47325 * 211.15352 * 7 6 2
10 10 C 1.53003 * 109.47359 * 91.15213 * 7 6 2
11 11 C 1.53117 * 109.52344 * 185.00247 * 10 7 6
12 12 C 1.53034 * 109.28084 * 182.44279 * 11 10 7
13 13 N 1.46848 * 109.52713 * 59.17482 * 12 11 10
14 14 C 1.46890 * 111.00272 * 174.16586 * 13 12 11
15 15 C 1.52995 * 109.47261 * 80.65986 * 14 13 12
16 16 C 1.53000 * 109.47029 * 312.61633 * 15 14 13
17 17 C 1.53000 * 109.47305 * 72.62412 * 15 14 13
18 18 C 1.53005 * 109.47193 * 192.62079 * 15 14 13
19 19 C 1.50696 * 109.47294 * 180.02562 * 18 15 14
20 20 H 1.08001 * 120.00096 * 359.97438 * 19 18 15
21 21 C 1.37876 * 120.00163 * 180.02562 * 19 18 15
22 22 N 1.31516 * 119.99873 * 359.97438 * 21 19 18
23 23 Si 1.86807 * 120.00006 * 180.02562 * 21 19 18
24 24 H 1.48494 * 109.47093 * 359.97438 * 23 21 19
25 25 H 1.48494 * 109.47069 * 119.99627 * 23 21 19
26 26 H 1.48497 * 109.46788 * 239.99507 * 23 21 19
27 27 C 1.46853 * 111.19658 * 298.26560 * 13 12 11
28 28 C 1.53037 * 109.52407 * 61.74020 * 27 13 12
29 29 H 1.08995 * 109.47046 * 274.22461 * 1 2 3
30 30 H 1.08999 * 109.47341 * 34.23484 * 1 2 3
31 31 H 1.09008 * 109.46754 * 154.22580 * 1 2 3
32 32 H 1.08007 * 125.89996 * 180.02562 * 4 3 2
33 33 H 1.07999 * 126.04125 * 180.23351 * 5 4 3
34 34 H 0.96698 * 113.99798 * 299.18885 * 9 7 6
35 35 H 1.08999 * 109.57054 * 305.15641 * 10 7 6
36 36 H 1.09004 * 109.50826 * 62.49536 * 11 10 7
37 37 H 1.09001 * 109.53230 * 302.40052 * 11 10 7
38 38 H 1.09000 * 109.45950 * 299.15945 * 12 11 10
39 39 H 1.09000 * 109.45491 * 179.18778 * 12 11 10
40 40 H 1.09007 * 109.47171 * 200.65962 * 14 13 12
41 41 H 1.09002 * 109.47057 * 320.65763 * 14 13 12
42 42 H 1.09001 * 109.46729 * 73.29303 * 16 15 14
43 43 H 1.09004 * 109.47085 * 193.28489 * 16 15 14
44 44 H 1.08994 * 109.47771 * 313.29287 * 16 15 14
45 45 H 1.08996 * 109.47310 * 25.47217 * 17 15 14
46 46 H 1.08994 * 109.47132 * 145.48226 * 17 15 14
47 47 H 1.09003 * 109.46403 * 265.47563 * 17 15 14
48 48 H 1.09003 * 109.47038 * 300.00170 * 18 15 14
49 49 H 1.09004 * 109.46861 * 59.99954 * 18 15 14
50 50 H 0.97004 * 119.99553 * 180.02562 * 22 21 19
51 51 H 1.08998 * 109.45717 * 181.75408 * 27 13 12
52 52 H 1.09003 * 109.45786 * 301.72077 * 27 13 12
53 53 H 1.09006 * 109.50329 * 180.88374 * 28 27 13
54 54 H 1.08994 * 109.53658 * 60.78113 * 28 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2890 1.1328 0.0000
4 6 3.5346 0.7323 0.0006
5 6 3.5437 -0.6664 0.0061
6 6 2.2589 -1.0912 0.0005
7 6 1.7975 -2.5257 0.0017
8 1 0.8295 -2.5956 0.4979
9 8 2.7494 -3.3318 0.6989
10 6 1.6684 -3.0212 -1.4401
11 6 1.0814 -4.4354 -1.4446
12 6 1.0114 -4.9489 -2.8845
13 7 2.3586 -4.9569 -3.4688
14 6 2.3506 -5.5732 -4.8021
15 6 1.8703 -4.5506 -5.8338
16 6 0.6058 -3.8609 -5.3178
17 6 2.9639 -3.5055 -6.0633
18 6 1.5608 -5.2629 -7.1521
19 6 1.0884 -4.2555 -8.1685
20 1 1.0156 -3.2117 -7.9008
21 6 0.7479 -4.6665 -9.4398
22 7 0.8360 -5.9377 -9.7655
23 14 0.1630 -3.4177 -10.6999
24 1 0.1534 -2.0646 -10.0882
25 1 1.0795 -3.4268 -11.8682
26 1 -1.2095 -3.7691 -11.1447
27 6 2.9239 -3.6025 -3.5185
28 6 3.0511 -3.0489 -2.0974
29 1 -0.3633 0.0757 1.0248
30 1 -0.3634 0.8496 -0.5781
31 1 -0.3633 -0.9255 -0.4469
32 1 4.4053 1.3713 0.0011
33 1 4.4211 -1.2961 0.0114
34 1 3.6324 -3.3272 0.3047
35 1 1.0128 -2.3530 -1.9985
36 1 0.0791 -4.4148 -1.0164
37 1 1.7162 -5.0953 -0.8534
38 1 0.3648 -4.2967 -3.4716
39 1 0.6073 -5.9612 -2.8897
40 1 3.3585 -5.9007 -5.0571
41 1 1.6789 -6.4317 -4.8015
42 1 0.8703 -3.1672 -4.5197
43 1 0.1321 -3.3136 -6.1328
44 1 -0.0858 -4.6104 -4.9332
45 1 3.9359 -3.9390 -5.8280
46 1 2.9502 -3.1883 -7.1060
47 1 2.7845 -2.6446 -5.4193
48 1 2.4617 -5.7543 -7.5197
49 1 0.7817 -6.0074 -6.9886
50 1 0.5969 -6.2267 -10.6601
51 1 3.9088 -3.6369 -3.9842
52 1 2.2684 -2.9566 -4.1026
53 1 3.4560 -2.0376 -2.1357
54 1 3.7176 -3.6861 -1.5163
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000857061039.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:44:33
Heat of formation + Delta-G solvation = 31.792742 kcal
Electronic energy + Delta-G solvation = -31169.337321 eV
Core-core repulsion = 27335.928413 eV
Total energy + Delta-G solvation = -3833.408908 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.39887 -41.35677 -38.96644 -36.66588 -34.72314 -34.23626 -33.18189 -32.02444
-31.35442 -29.11252 -28.82205 -28.08046 -27.60673 -26.55881 -24.57467 -23.76429
-22.76309 -22.02171 -20.78459 -20.43840 -19.78169 -18.52838 -18.26159 -17.20370
-16.75392 -16.49988 -16.38524 -16.27358 -16.03014 -15.68271 -15.61876 -15.14107
-14.57079 -14.51886 -14.44622 -14.28219 -14.00139 -13.91819 -13.74413 -13.48708
-13.36957 -13.21879 -12.98144 -12.76523 -12.68120 -12.57915 -12.38540 -12.30675
-12.22526 -11.94631 -11.92158 -11.58167 -11.54371 -11.45507 -11.34032 -11.17763
-11.03221 -10.84967 -10.82156 -10.53435 -10.17963 -9.44056 -8.78536 -8.15661
-6.23320 0.88304 1.36693 1.38316 1.49500 1.63072 1.90281 2.40643
3.16740 3.17236 3.35492 3.48947 3.71117 3.77712 3.81090 4.03719
4.12128 4.12749 4.18900 4.27314 4.38025 4.39097 4.44111 4.50069
4.59616 4.64028 4.74352 4.76329 4.78596 4.82061 4.82491 4.83865
4.89054 4.96741 5.01485 5.04081 5.09266 5.15639 5.18815 5.20924
5.29624 5.32460 5.45811 5.48321 5.54555 5.59302 5.65802 5.74509
5.83587 5.90067 6.07836 6.26356 6.33526 6.40305 6.66297 6.77494
6.91727 7.43705 8.95545
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.015911 B = 0.002846 C = 0.002636
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1759.339971 B = 9835.123288 C =10620.325083
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -0.375 5.375
3 N -0.336 5.336
4 C 0.038 3.962
5 C -0.274 4.274
6 C 0.054 3.946
7 C 0.189 3.811
8 H 0.117 0.883
9 O -0.551 6.551
10 C -0.103 4.103
11 C -0.096 4.096
12 C 0.019 3.981
13 N -0.525 5.525
14 C 0.072 3.928
15 C -0.083 4.083
16 C -0.135 4.135
17 C -0.138 4.138
18 C 0.044 3.956
19 C -0.512 4.512
20 H 0.062 0.938
21 C -0.003 4.003
22 N -0.936 5.936
23 Si 0.953 3.047
24 H -0.263 1.263
25 H -0.282 1.282
26 H -0.282 1.282
27 C 0.033 3.967
28 C -0.111 4.111
29 H 0.088 0.912
30 H 0.090 0.910
31 H 0.106 0.894
32 H 0.204 0.796
33 H 0.164 0.836
34 H 0.388 0.612
35 H 0.070 0.930
36 H 0.078 0.922
37 H 0.072 0.928
38 H 0.062 0.938
39 H 0.063 0.937
40 H 0.064 0.936
41 H 0.055 0.945
42 H 0.073 0.927
43 H 0.040 0.960
44 H 0.051 0.949
45 H 0.052 0.948
46 H 0.037 0.963
47 H 0.071 0.929
48 H -0.015 1.015
49 H -0.017 1.017
50 H 0.260 0.740
51 H 0.073 0.927
52 H 0.056 0.944
53 H 0.073 0.927
54 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.338 9.146 23.397 25.230
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 N -0.158 5.158
3 N -0.158 5.158
4 C -0.146 4.146
5 C -0.303 4.303
6 C -0.074 4.074
7 C 0.128 3.872
8 H 0.135 0.865
9 O -0.358 6.358
10 C -0.123 4.123
11 C -0.134 4.134
12 C -0.108 4.108
13 N -0.248 5.248
14 C -0.056 4.056
15 C -0.085 4.085
16 C -0.191 4.191
17 C -0.195 4.195
18 C 0.006 3.994
19 C -0.550 4.550
20 H 0.081 0.919
21 C -0.200 4.200
22 N -0.577 5.577
23 Si 0.779 3.221
24 H -0.187 1.187
25 H -0.208 1.208
26 H -0.208 1.208
27 C -0.094 4.094
28 C -0.148 4.148
29 H 0.106 0.894
30 H 0.109 0.891
31 H 0.125 0.875
32 H 0.221 0.779
33 H 0.181 0.819
34 H 0.239 0.761
35 H 0.089 0.911
36 H 0.097 0.903
37 H 0.091 0.909
38 H 0.079 0.921
39 H 0.082 0.918
40 H 0.082 0.918
41 H 0.074 0.926
42 H 0.091 0.909
43 H 0.059 0.941
44 H 0.070 0.930
45 H 0.071 0.929
46 H 0.056 0.944
47 H 0.090 0.910
48 H 0.003 0.997
49 H 0.002 0.998
50 H 0.069 0.931
51 H 0.091 0.909
52 H 0.074 0.926
53 H 0.091 0.909
54 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 1.168 9.637 23.977 25.868
hybrid contribution 0.151 0.098 -2.322 2.329
sum 1.319 9.735 21.656 23.780
Atomic orbital electron populations
1.22177 0.72989 1.05684 1.04619 1.48698 1.07496 1.02968 1.56680
1.77319 1.02942 1.09235 1.26299 1.24307 0.95453 0.95880 0.98997
1.21458 0.96825 0.95112 1.16915 1.22154 0.92184 0.91746 1.01361
1.20284 0.93175 0.81097 0.92687 0.86545 1.86596 1.24397 1.68581
1.56192 1.21735 0.98273 0.97551 0.94710 1.21502 1.01434 0.95003
0.95460 1.22835 0.90442 1.01489 0.96064 1.62255 1.22064 1.20193
1.20307 1.22212 1.00415 0.95928 0.87089 1.21084 0.95574 0.96165
0.95643 1.22373 0.97116 0.99748 0.99908 1.22404 0.97306 0.98403
1.01351 1.18974 0.93909 0.94420 0.92048 1.21608 1.42265 0.94723
0.96446 0.91945 1.25886 0.96455 0.96802 1.00828 1.70110 1.50581
1.16487 1.20546 0.85574 0.77792 0.79692 0.79078 1.18671 1.20823
1.20795 1.22920 1.00151 0.89324 0.97041 1.21684 0.96559 1.01090
0.95516 0.89384 0.89101 0.87535 0.77906 0.81859 0.76084 0.91115
0.90309 0.90912 0.92054 0.91824 0.91785 0.92646 0.90897 0.94051
0.93043 0.92871 0.94359 0.91043 0.99709 0.99824 0.93147 0.90903
0.92636 0.90865 0.90311
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.01 11.16 127.77 1.43 2.43 16
2 N -0.37 -7.06 4.01 -356.03 -1.43 -8.49 16
3 N -0.34 -7.64 12.58 -57.01 -0.72 -8.36 16
4 C 0.04 0.71 12.03 85.24 1.03 1.73 16
5 C -0.27 -4.57 8.79 21.99 0.19 -4.38 16
6 C 0.05 0.93 5.52 41.41 0.23 1.15 16
7 C 0.19 2.68 2.73 29.85 0.08 2.76 16
8 H 0.12 1.43 7.57 -2.39 -0.02 1.41 16
9 O -0.55 -8.38 12.58 -148.98 -1.87 -10.25 16
10 C -0.10 -1.61 2.08 -10.71 -0.02 -1.64 16
11 C -0.10 -1.66 5.30 30.64 0.16 -1.50 16
12 C 0.02 0.45 4.60 86.32 0.40 0.84 16
13 N -0.53 -13.73 4.86 -896.37 -4.35 -18.09 16
14 C 0.07 2.38 4.93 86.30 0.43 2.81 16
15 C -0.08 -3.14 0.52 -52.18 -0.03 -3.17 16
16 C -0.14 -4.68 6.44 71.98 0.46 -4.22 16
17 C -0.14 -4.86 7.15 71.98 0.51 -4.35 16
18 C 0.04 2.24 3.99 29.85 0.12 2.36 16
19 C -0.51 -27.94 7.01 25.60 0.18 -27.76 16
20 H 0.06 3.29 6.21 -2.91 -0.02 3.27 16
21 C 0.00 -0.16 5.46 84.65 0.46 0.30 16
22 N -0.94 -56.78 13.29 21.45 0.28 -56.50 16
23 Si 0.95 44.15 29.54 68.60 2.03 46.18 16
24 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16
25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16
26 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16
27 C 0.03 0.76 3.48 86.32 0.30 1.06 16
28 C -0.11 -1.91 4.66 30.65 0.14 -1.76 16
29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16
30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16
31 H 0.11 0.82 7.43 -2.38 -0.02 0.80 16
32 H 0.20 2.49 8.06 -2.91 -0.02 2.47 16
33 H 0.16 1.96 7.52 -2.91 -0.02 1.94 16
34 H 0.39 4.25 6.23 -74.06 -0.46 3.79 16
35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16
36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16
37 H 0.07 1.36 7.77 -2.39 -0.02 1.34 16
38 H 0.06 1.53 3.55 -2.39 -0.01 1.52 16
39 H 0.06 1.56 7.93 -2.39 -0.02 1.54 16
40 H 0.06 2.17 7.79 -2.38 -0.02 2.15 16
41 H 0.05 1.94 7.72 -2.39 -0.02 1.92 16
42 H 0.07 2.11 4.16 -2.39 -0.01 2.10 16
43 H 0.04 1.64 6.30 -2.38 -0.02 1.62 16
44 H 0.05 1.74 6.41 -2.39 -0.02 1.72 16
45 H 0.05 1.73 6.50 -2.39 -0.02 1.71 16
46 H 0.04 1.58 6.35 -2.39 -0.02 1.56 16
47 H 0.07 2.17 5.15 -2.39 -0.01 2.15 16
48 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16
49 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16
50 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16
51 H 0.07 1.79 6.34 -2.39 -0.02 1.78 16
52 H 0.06 1.45 2.67 -2.39 -0.01 1.44 16
53 H 0.07 1.24 6.56 -2.38 -0.02 1.23 16
54 H 0.08 1.22 6.57 -2.39 -0.02 1.21 16
Total: -1.00 -69.46 385.99 0.46 -69.00
By element:
Atomic # 1 Polarization: 19.38 SS G_CDS: 0.45 Total: 19.83 kcal
Atomic # 6 Polarization: -39.39 SS G_CDS: 6.07 Total: -33.32 kcal
Atomic # 7 Polarization: -85.22 SS G_CDS: -6.22 Total: -91.44 kcal
Atomic # 8 Polarization: -8.38 SS G_CDS: -1.87 Total: -10.25 kcal
Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal
Total: -69.46 0.46 -69.00 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000857061039.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.788 kcal
(2) G-P(sol) polarization free energy of solvation -69.459 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.329 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.996 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.793 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds