Wall clock time and date at job start Tue Mar 31 2020 18:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.52127 * 2 1 4 4 C 1.53187 * 109.50123 * 239.92017 * 2 1 3 5 5 N 1.46927 * 108.77463 * 185.41375 * 4 2 1 6 6 C 1.36937 * 120.62820 * 233.62563 * 5 4 2 7 7 H 1.07999 * 119.99743 * 151.82204 * 6 5 4 8 8 C 1.38812 * 119.99921 * 331.82139 * 6 5 4 9 9 N 1.31614 * 120.00428 * 343.08134 * 8 6 5 10 10 Si 1.86806 * 119.99729 * 163.08430 * 8 6 5 11 11 H 1.48500 * 109.47066 * 60.00080 * 10 8 6 12 12 H 1.48505 * 109.46868 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47438 * 299.99806 * 10 8 6 14 14 C 1.46926 * 118.74092 * 53.60339 * 5 4 2 15 15 C 1.53185 * 108.77427 * 306.39384 * 14 5 4 16 16 C 1.53040 * 109.31667 * 54.63598 * 15 14 5 17 17 H 1.09000 * 109.46071 * 58.64882 * 16 15 14 18 18 N 1.46501 * 109.46285 * 178.61146 * 16 15 14 19 19 C 1.34770 * 119.99996 * 274.99851 * 18 16 15 20 20 O 1.21274 * 120.00205 * 0.02562 * 19 18 16 21 21 C 1.50704 * 119.99708 * 180.02562 * 19 18 16 22 22 H 1.09002 * 109.57692 * 299.99992 * 21 19 18 23 23 C 1.53136 * 109.57980 * 60.26303 * 21 19 18 24 24 N 1.46900 * 109.36895 * 119.81350 * 23 21 19 25 25 C 1.46946 * 111.05783 * 297.99316 * 24 23 21 26 26 C 1.53675 * 109.31065 * 62.02070 * 25 24 23 27 27 C 1.53380 * 109.57744 * 179.73932 * 21 19 18 28 28 C 1.53396 * 108.59344 * 181.35547 * 27 21 19 29 29 C 1.46945 * 111.05967 * 61.99304 * 24 23 21 30 30 H 1.08992 * 109.47355 * 299.92192 * 1 2 3 31 31 H 1.09001 * 109.46920 * 59.92286 * 1 2 3 32 32 H 1.09005 * 109.46946 * 179.91576 * 1 2 3 33 33 H 1.08994 * 109.47076 * 180.08127 * 3 2 1 34 34 H 1.09001 * 109.46602 * 300.07916 * 3 2 1 35 35 H 1.09002 * 109.46812 * 60.07602 * 3 2 1 36 36 H 1.09002 * 109.58334 * 305.19682 * 4 2 1 37 37 H 1.09001 * 109.58987 * 65.47979 * 4 2 1 38 38 H 0.96997 * 120.00514 * 180.02562 * 9 8 6 39 39 H 1.08997 * 109.58624 * 186.60127 * 14 5 4 40 40 H 1.09005 * 109.58140 * 66.17947 * 14 5 4 41 41 H 1.09005 * 109.49888 * 174.58482 * 15 14 5 42 42 H 1.08997 * 109.50120 * 294.67777 * 15 14 5 43 43 H 0.97005 * 119.99411 * 95.00085 * 18 16 15 44 44 H 1.09005 * 109.48609 * 239.78425 * 23 21 19 45 45 H 1.08997 * 109.49087 * 359.84294 * 23 21 19 46 46 H 1.08998 * 109.49317 * 181.92477 * 25 24 23 47 47 H 1.09000 * 109.48587 * 301.99554 * 25 24 23 48 48 H 1.08994 * 109.50415 * 240.24025 * 26 25 24 49 49 H 1.08997 * 109.82080 * 119.87009 * 26 25 24 50 50 H 1.09003 * 110.11609 * 60.58857 * 27 21 19 51 51 H 1.09001 * 109.47124 * 298.98874 * 28 27 21 52 52 H 1.09004 * 109.68478 * 178.73603 * 28 27 21 53 53 H 1.09004 * 109.49273 * 58.00288 * 29 24 23 54 54 H 1.09004 * 109.48714 * 178.07326 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0414 -0.7237 -1.2495 5 7 3.5047 -0.8290 -1.1694 6 6 4.2937 -0.3784 -2.1939 7 1 5.2961 -0.0314 -1.9910 8 6 3.8051 -0.3676 -3.4932 9 7 2.7421 -1.0794 -3.8025 10 14 4.6564 0.6571 -4.8027 11 1 6.0619 0.2013 -4.9517 12 1 3.9449 0.4973 -6.0963 13 1 4.6395 2.0867 -4.4012 14 6 4.1054 -1.4265 0.0310 15 6 3.5708 -0.6948 1.2661 16 6 2.0408 -0.7229 1.2484 17 1 1.6968 -1.7571 1.2354 18 7 1.5264 -0.0528 2.4454 19 6 1.3971 -0.7384 3.5984 20 8 1.7069 -1.9100 3.6453 21 6 0.8674 -0.0492 4.8295 22 1 1.5203 0.7834 5.0914 23 6 -0.5461 0.4733 4.5570 24 7 -1.4861 -0.1517 5.4970 25 6 -1.5221 -1.6096 5.3168 26 6 -0.1315 -2.1928 5.6129 27 6 0.8137 -1.0462 5.9938 28 6 0.2404 -0.3313 7.2239 29 6 -1.1559 0.1986 6.8854 30 1 -0.3633 0.5126 0.8906 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1312 1.4412 -0.0015 34 1 1.6772 1.9566 -0.8893 35 1 1.6795 1.9558 0.8907 36 1 1.6054 -1.7216 -1.2979 37 1 1.7617 -0.1592 -2.1390 38 1 2.4008 -1.0721 -4.7104 39 1 5.1896 -1.3244 -0.0135 40 1 3.8376 -2.4816 0.0869 41 1 3.9334 -1.1894 2.1673 42 1 3.9158 0.3391 1.2542 43 1 1.2789 0.8844 2.4078 44 1 -0.5655 1.5552 4.6886 45 1 -0.8347 0.2257 3.5355 46 1 -2.2509 -2.0429 6.0018 47 1 -1.8044 -1.8422 4.2900 48 1 0.2475 -2.6987 4.7250 49 1 -0.1961 -2.9021 6.4379 50 1 1.8128 -1.4247 6.2096 51 1 0.8903 0.5002 7.4966 52 1 0.1734 -1.0309 8.0571 53 1 -1.1714 1.2824 7.0006 54 1 -1.8878 -0.2496 7.5574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940744697.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:33 Heat of formation + Delta-G solvation = -33.206132 kcal Electronic energy + Delta-G solvation = -31806.015095 eV Core-core repulsion = 27969.787625 eV Total energy + Delta-G solvation = -3836.227471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.28529 -40.80932 -39.12750 -36.27800 -34.37341 -33.87839 -33.17159 -32.40122 -31.78112 -30.85617 -28.13800 -27.61129 -26.92335 -25.07606 -24.03883 -23.80471 -23.56522 -22.30160 -21.32475 -19.78328 -18.99243 -18.30177 -18.10868 -17.42380 -17.31483 -16.89427 -16.66151 -16.20779 -15.76998 -15.64589 -15.25125 -15.05636 -14.92973 -14.49071 -14.20846 -13.94260 -13.86976 -13.75900 -13.28813 -13.14506 -13.13194 -13.03547 -13.01040 -12.96701 -12.85535 -12.68331 -12.59542 -12.48413 -12.44010 -12.32541 -11.99436 -11.90019 -11.83323 -11.63164 -11.33800 -11.29547 -11.16352 -11.06602 -10.52825 -10.48868 -9.90309 -9.17918 -8.67791 -7.86405 -5.31953 1.48068 1.49328 1.56445 1.70587 2.22549 2.51779 3.04368 3.28648 3.49926 3.62224 3.68307 3.75061 3.86817 3.98666 4.06050 4.10200 4.13155 4.24271 4.30870 4.34450 4.36584 4.41810 4.45059 4.50604 4.60139 4.65592 4.66796 4.80411 4.84900 4.86583 4.96340 4.97239 4.99263 5.03101 5.04446 5.10058 5.12296 5.17149 5.22441 5.22622 5.26573 5.30672 5.35172 5.43700 5.44141 5.60657 5.64368 5.70768 5.75271 6.08767 6.16886 6.39486 6.66093 7.15463 7.35794 7.84940 8.38490 9.20101 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.027798 B = 0.002863 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.027312 B = 9777.675899 C =10022.228409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 C -0.119 4.119 4 C 0.196 3.804 5 N -0.602 5.602 6 C -0.259 4.259 7 H 0.066 0.934 8 C -0.047 4.047 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.279 1.279 12 H -0.296 1.296 13 H -0.274 1.274 14 C 0.144 3.856 15 C -0.126 4.126 16 C 0.178 3.822 17 H 0.047 0.953 18 N -0.707 5.707 19 C 0.514 3.486 20 O -0.578 6.578 21 C -0.131 4.131 22 H 0.121 0.879 23 C 0.062 3.938 24 N -0.531 5.531 25 C 0.055 3.945 26 C -0.159 4.159 27 C -0.068 4.068 28 C -0.142 4.142 29 C 0.051 3.949 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.073 0.927 36 H -0.018 1.018 37 H 0.063 0.937 38 H 0.250 0.750 39 H 0.056 0.944 40 H 0.000 1.000 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.410 0.590 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.064 0.936 50 H 0.064 0.936 51 H 0.079 0.921 52 H 0.072 0.928 53 H 0.093 0.907 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.907 7.735 22.578 25.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.089 4.089 3 C -0.176 4.176 4 C 0.070 3.930 5 N -0.325 5.325 6 C -0.389 4.389 7 H 0.084 0.916 8 C -0.242 4.242 9 N -0.581 5.581 10 Si 0.793 3.207 11 H -0.205 1.205 12 H -0.222 1.222 13 H -0.200 1.200 14 C 0.018 3.982 15 C -0.166 4.166 16 C 0.073 3.927 17 H 0.066 0.934 18 N -0.358 5.358 19 C 0.302 3.698 20 O -0.458 6.458 21 C -0.154 4.154 22 H 0.139 0.861 23 C -0.067 4.067 24 N -0.251 5.251 25 C -0.073 4.073 26 C -0.198 4.198 27 C -0.087 4.087 28 C -0.181 4.181 29 C -0.077 4.077 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.000 1.000 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.018 0.982 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.248 0.752 44 H 0.130 0.870 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.098 0.902 52 H 0.091 0.909 53 H 0.111 0.889 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.262 7.088 22.339 25.201 hybrid contribution 1.433 -0.429 -1.277 1.967 sum -7.829 6.660 21.062 23.436 Atomic orbital electron populations 1.21707 0.93411 1.01074 1.02297 1.21325 0.95935 0.96988 0.94616 1.21659 1.01226 0.93689 1.01064 1.20586 0.82502 0.94911 0.94991 1.44250 1.02115 1.69552 1.16565 1.19423 0.98296 1.34684 0.86503 0.91629 1.25756 0.99398 1.00160 0.98893 1.70177 1.27282 1.41764 1.18864 0.85389 0.77875 0.79280 0.78182 1.20477 1.22218 1.20026 1.20951 0.96777 0.93640 0.86845 1.22222 0.95605 1.01422 0.97344 1.20510 0.92960 0.95380 0.83844 0.93434 1.46086 1.65529 1.14863 1.09341 1.21127 0.76807 0.86713 0.85157 1.90633 1.51474 1.18307 1.85346 1.22145 1.00910 1.00044 0.92319 0.86124 1.22321 0.86520 1.00779 0.97057 1.62535 1.48095 1.09035 1.05446 1.22260 0.95802 0.87642 1.01621 1.22481 0.96627 0.98338 1.02314 1.20876 0.99081 0.94726 0.94061 1.22256 0.98416 1.00888 0.96565 1.22329 0.94920 1.01974 0.88440 0.90458 0.92626 0.94353 0.93120 0.93800 0.90871 1.00023 0.91916 0.94123 0.92513 0.98174 0.92651 0.90775 0.75215 0.87012 0.91062 0.89613 0.92287 0.92092 0.91690 0.91718 0.90182 0.90934 0.88861 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.31 71.98 0.60 -3.17 16 2 C -0.09 -3.00 0.56 -52.10 -0.03 -3.03 16 3 C -0.12 -3.70 7.83 71.98 0.56 -3.14 16 4 C 0.20 9.33 3.98 86.36 0.34 9.68 16 5 N -0.60 -30.09 2.43 -699.11 -1.70 -31.78 16 6 C -0.26 -14.07 9.58 84.03 0.81 -13.26 16 7 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16 8 C -0.05 -2.58 4.92 84.86 0.42 -2.16 16 9 N -0.93 -55.13 11.19 21.65 0.24 -54.88 16 10 Si 0.96 44.41 29.59 68.60 2.03 46.44 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 14 C 0.14 6.31 6.52 86.36 0.56 6.87 16 15 C -0.13 -4.49 5.31 30.67 0.16 -4.33 16 16 C 0.18 5.98 1.57 45.02 0.07 6.05 16 17 H 0.05 1.93 7.58 -2.39 -0.02 1.91 16 18 N -0.71 -17.55 4.04 -442.41 -1.79 -19.34 16 19 C 0.51 13.46 6.56 87.66 0.58 14.03 16 20 O -0.58 -20.38 13.40 -3.01 -0.04 -20.42 16 21 C -0.13 -2.33 2.59 -11.37 -0.03 -2.36 16 22 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 23 C 0.06 0.94 5.61 86.35 0.48 1.42 16 24 N -0.53 -8.50 5.22 -894.06 -4.67 -13.17 16 25 C 0.06 1.04 6.12 86.52 0.53 1.57 16 26 C -0.16 -3.46 5.45 30.95 0.17 -3.29 16 27 C -0.07 -1.29 2.60 -10.40 -0.03 -1.31 16 28 C -0.14 -1.79 5.74 30.77 0.18 -1.61 16 29 C 0.05 0.60 6.09 86.34 0.53 1.12 16 30 H 0.08 1.77 7.36 -2.39 -0.02 1.75 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.05 1.79 5.97 -2.39 -0.01 1.78 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.63 6.58 -2.39 -0.02 1.61 16 36 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H 0.06 3.35 6.06 -2.39 -0.01 3.34 16 38 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 39 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 40 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 41 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.07 2.50 6.34 -2.39 -0.02 2.49 16 43 H 0.41 7.71 6.57 -92.70 -0.61 7.10 16 44 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.07 1.26 7.46 -2.39 -0.02 1.24 16 46 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.06 1.79 5.57 -2.39 -0.01 1.78 16 49 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.06 1.46 8.12 -2.39 -0.02 1.44 16 51 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 53 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 54 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -67.71 390.41 0.24 -67.47 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.26 Total: 22.60 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 5.90 Total: 3.09 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -7.91 Total: -119.18 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.04 Total: -20.42 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -67.71 0.24 -67.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940744697.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.264 kcal (2) G-P(sol) polarization free energy of solvation -67.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds