Wall clock time and date at job start Tue Mar 31 2020 19:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.01700 * 2 1 4 4 C 1.54266 * 110.03121 * 238.61124 * 2 1 3 5 5 C 1.54894 * 104.31305 * 216.98718 * 4 2 1 6 6 C 1.55238 * 102.58338 * 37.93170 * 5 4 2 7 7 H 1.09006 * 110.46947 * 80.77225 * 6 5 4 8 8 C 1.53003 * 110.46855 * 203.39183 * 6 5 4 9 9 C 1.50699 * 109.46890 * 289.80878 * 8 6 5 10 10 O 1.21285 * 120.00557 * 0.02562 * 9 8 6 11 11 N 1.34782 * 119.99566 * 179.97438 * 9 8 6 12 12 C 1.47073 * 120.88466 * 359.72713 * 11 9 8 13 13 C 1.53688 * 108.28049 * 128.75184 * 12 11 9 14 14 N 1.46902 * 109.25755 * 54.08337 * 13 12 11 15 15 C 1.46899 * 111.00294 * 172.60808 * 14 13 12 16 16 C 1.53951 * 113.73997 * 38.04352 * 15 14 13 17 17 N 1.47811 * 86.03472 * 222.08308 * 16 15 14 18 18 C 1.36934 * 134.45681 * 204.64527 * 17 16 15 19 19 H 1.07998 * 120.00019 * 179.86900 * 18 17 16 20 20 C 1.38812 * 119.99930 * 359.86293 * 18 17 16 21 21 N 1.31622 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99800 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47336 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46966 * 120.00337 * 22 20 18 25 25 H 1.48497 * 109.46810 * 239.99980 * 22 20 18 26 26 C 1.47581 * 91.05034 * 24.54972 * 17 16 15 27 27 C 1.46901 * 111.26810 * 296.75935 * 14 13 12 28 28 C 1.47078 * 120.87857 * 180.02562 * 11 9 8 29 29 C 1.53869 * 110.07634 * 121.41682 * 2 1 3 30 30 H 1.08994 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46753 * 299.93794 * 1 2 3 32 32 H 1.09002 * 109.47167 * 59.93435 * 1 2 3 33 33 H 1.09002 * 110.48629 * 335.73471 * 4 2 1 34 34 H 1.08998 * 110.48744 * 98.24375 * 4 2 1 35 35 H 1.08996 * 110.75388 * 156.31523 * 5 4 2 36 36 H 1.08993 * 110.76071 * 279.69749 * 5 4 2 37 37 H 1.08996 * 109.46787 * 49.80874 * 8 6 5 38 38 H 1.08995 * 109.47205 * 169.81284 * 8 6 5 39 39 H 1.09001 * 109.62803 * 248.52164 * 12 11 9 40 40 H 1.09000 * 109.62936 * 9.09621 * 12 11 9 41 41 H 1.09001 * 109.64903 * 294.08198 * 13 12 11 42 42 H 1.09001 * 109.42273 * 173.94608 * 13 12 11 43 43 H 1.08996 * 112.94439 * 169.63044 * 15 14 13 44 44 H 1.08997 * 113.76802 * 336.35052 * 16 15 14 45 45 H 1.08996 * 113.76901 * 107.74282 * 16 15 14 46 46 H 0.97000 * 119.99809 * 179.97438 * 21 20 18 47 47 H 1.09003 * 113.76757 * 221.14927 * 26 17 16 48 48 H 1.09001 * 113.87483 * 89.77182 * 26 17 16 49 49 H 1.09006 * 109.49287 * 303.14716 * 27 14 13 50 50 H 1.09001 * 109.49221 * 183.06497 * 27 14 13 51 51 H 1.09001 * 109.63005 * 350.89539 * 28 11 9 52 52 H 1.08996 * 109.63130 * 111.28225 * 28 11 9 53 53 H 1.08999 * 110.04012 * 238.59163 * 29 2 1 54 54 H 1.09003 * 110.03070 * 0.02690 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7549 -1.2372 5 6 3.3159 -1.4992 -0.7235 6 6 2.8891 -1.9398 0.7026 7 1 2.2793 -2.8421 0.6563 8 6 4.1196 -2.1680 1.5828 9 6 4.8468 -3.4037 1.1188 10 8 4.4230 -4.0390 0.1766 11 7 5.9689 -3.8022 1.7503 12 6 6.5039 -3.0426 2.8904 13 6 6.7417 -4.0202 4.0521 14 7 7.5916 -5.1253 3.5891 15 6 7.9880 -5.9895 4.7089 16 6 6.8764 -6.1999 5.7531 17 7 7.9387 -6.0317 6.7671 18 6 8.0990 -6.4387 8.0647 19 1 8.9973 -6.1791 8.6050 20 6 7.1068 -7.1849 8.6856 21 7 6.0121 -7.5016 8.0270 22 14 7.3252 -7.7395 10.4560 23 1 8.6328 -7.2570 10.9682 24 1 6.2307 -7.1794 11.2888 25 1 7.2853 -9.2227 10.5185 26 6 8.7576 -5.2514 5.8192 27 6 6.9276 -5.9023 2.5339 28 6 6.6943 -5.0048 1.3135 29 6 2.0582 -0.7533 1.2333 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5129 0.8906 32 1 -0.3633 0.5149 -0.8894 33 1 1.3145 -1.4658 -1.5968 34 1 2.3266 -0.0528 -2.0267 35 1 3.5346 -2.3649 -1.3486 36 1 4.1722 -0.8264 -0.6799 37 1 4.7835 -1.3066 1.5095 38 1 3.8063 -2.2983 2.6186 39 1 7.4445 -2.5705 2.6067 40 1 5.7852 -2.2808 3.1924 41 1 5.7873 -4.4162 4.3991 42 1 7.2380 -3.4976 4.8698 43 1 8.4654 -6.9139 4.3840 44 1 6.1286 -5.4070 5.7644 45 1 6.4394 -7.1982 5.7344 46 1 5.3189 -8.0234 8.4609 47 1 9.8198 -5.4939 5.8533 48 1 8.5652 -4.1789 5.8489 49 1 5.9705 -6.2720 2.9020 50 1 7.5588 -6.7446 2.2506 51 1 6.1015 -5.5411 0.5725 52 1 7.6513 -4.7172 0.8782 53 1 2.6876 -0.0949 1.8319 54 1 1.2245 -1.1198 1.8323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941524278.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:33 Heat of formation + Delta-G solvation = -1.449478 kcal Electronic energy + Delta-G solvation = -29873.846997 eV Core-core repulsion = 26038.996598 eV Total energy + Delta-G solvation = -3834.850399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.49122 -40.46892 -39.19034 -37.82816 -35.18291 -33.94555 -33.48421 -32.10872 -30.55993 -29.75453 -28.43219 -27.26612 -26.62104 -25.23812 -24.72382 -24.29336 -22.51783 -21.32509 -20.61900 -20.23506 -19.53880 -18.73923 -18.16146 -17.33056 -16.95955 -16.78069 -16.52398 -16.19028 -16.03373 -15.84854 -15.58875 -15.48803 -14.66355 -14.49831 -14.28676 -14.22089 -13.91051 -13.86024 -13.64341 -13.39896 -13.35297 -13.22309 -13.10867 -12.84005 -12.67242 -12.63834 -12.25520 -12.19073 -12.08282 -11.92868 -11.84972 -11.73417 -11.61882 -11.56529 -11.53370 -11.43917 -11.38485 -11.19218 -10.87434 -10.67415 -9.74718 -9.24699 -8.86769 -7.92548 -5.26548 1.43738 1.44566 1.55164 1.66612 2.01101 2.43717 2.85130 3.27782 3.47155 3.48892 3.68290 3.77196 3.84630 3.86585 3.96689 4.01951 4.17676 4.22376 4.26582 4.34860 4.38690 4.46069 4.50407 4.58835 4.60665 4.63366 4.67827 4.73290 4.75136 4.78668 4.81734 4.84097 4.88317 4.94567 4.95442 5.00216 5.06219 5.11070 5.13243 5.18153 5.21587 5.25858 5.35506 5.37155 5.41767 5.46549 5.51239 5.56822 5.63262 5.89006 6.06220 6.13243 6.46322 6.88846 7.20450 7.58583 8.53808 9.23767 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.002249 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.126922 B =12446.448786 C =13424.478942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.120 4.120 5 C -0.114 4.114 6 C -0.076 4.076 7 H 0.054 0.946 8 C -0.129 4.129 9 C 0.509 3.491 10 O -0.581 6.581 11 N -0.617 5.617 12 C 0.120 3.880 13 C 0.035 3.965 14 N -0.515 5.515 15 C 0.064 3.936 16 C 0.133 3.867 17 N -0.640 5.640 18 C -0.229 4.229 19 H 0.087 0.913 20 C -0.072 4.072 21 N -0.957 5.957 22 Si 0.979 3.021 23 H -0.262 1.262 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.131 3.869 27 C 0.046 3.954 28 C 0.124 3.876 29 C -0.114 4.114 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.022 0.978 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.023 0.977 45 H 0.026 0.974 46 H 0.246 0.754 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.015 0.985 50 H 0.096 0.904 51 H 0.082 0.918 52 H 0.089 0.911 53 H 0.081 0.919 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 17.286 -17.725 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.099 0.901 4 C -0.158 4.158 5 C -0.152 4.152 6 C -0.095 4.095 7 H 0.073 0.927 8 C -0.168 4.168 9 C 0.300 3.700 10 O -0.461 6.461 11 N -0.350 5.350 12 C -0.003 4.003 13 C -0.093 4.093 14 N -0.239 5.239 15 C -0.046 4.046 16 C 0.006 3.994 17 N -0.368 5.368 18 C -0.357 4.357 19 H 0.105 0.895 20 C -0.264 4.264 21 N -0.606 5.606 22 Si 0.807 3.193 23 H -0.186 1.186 24 H -0.221 1.221 25 H -0.221 1.221 26 C 0.006 3.994 27 C -0.083 4.083 28 C 0.001 3.999 29 C -0.152 4.152 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.131 0.869 41 H 0.040 0.960 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.041 0.959 45 H 0.045 0.955 46 H 0.055 0.945 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.033 0.967 50 H 0.114 0.886 51 H 0.100 0.900 52 H 0.107 0.893 53 H 0.099 0.901 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.676 17.025 -18.139 25.147 hybrid contribution -1.043 -1.407 1.623 2.388 sum -4.720 15.618 -16.516 23.216 Atomic orbital electron populations 1.21888 0.94925 1.01445 1.01991 1.21740 0.95799 0.99587 0.94245 0.90098 1.22443 0.96880 0.98781 0.97649 1.22547 0.97901 0.99117 0.95620 1.21756 0.94760 0.98176 0.94776 0.92737 1.21847 0.97684 0.95592 1.01708 1.21311 0.79773 0.86994 0.81943 1.90650 1.67130 1.58104 1.30258 1.48369 1.25815 1.27711 1.33082 1.22120 1.01261 0.93220 0.83660 1.22702 0.95369 0.93173 0.98104 1.62078 1.41054 1.10723 1.10041 1.23841 0.96501 0.95995 0.88247 1.22849 0.92129 0.97812 0.86600 1.46208 1.19392 1.60945 1.10211 1.19477 1.02310 1.26337 0.87607 0.89510 1.25662 0.96403 1.01712 1.02640 1.70042 1.09115 1.43952 1.37522 0.84994 0.77712 0.77179 0.79374 1.18586 1.22053 1.22067 1.22790 0.95653 0.95151 0.85780 1.22440 0.97095 0.96644 0.92146 1.21613 0.97156 0.85656 0.95458 1.22300 0.99246 0.96061 0.97571 0.93449 0.92194 0.92330 0.92525 0.91069 0.93235 0.91029 0.86171 0.87737 0.88562 0.86881 0.96000 0.89096 0.88195 0.95925 0.95540 0.94483 0.92393 0.92651 0.96710 0.88554 0.90007 0.89322 0.90072 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.84 71.98 0.64 -1.14 16 2 C -0.10 -1.23 3.50 -10.07 -0.04 -1.26 16 3 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.12 -1.81 6.35 31.67 0.20 -1.61 16 5 C -0.11 -2.07 5.77 32.01 0.18 -1.88 16 6 C -0.08 -1.37 2.45 -9.60 -0.02 -1.39 16 7 H 0.05 1.28 7.90 -2.38 -0.02 1.26 16 8 C -0.13 -2.13 3.42 29.85 0.10 -2.02 16 9 C 0.51 12.29 7.52 87.66 0.66 12.95 16 10 O -0.58 -18.35 14.19 -3.05 -0.04 -18.39 16 11 N -0.62 -13.91 3.00 -817.00 -2.45 -16.36 16 12 C 0.12 2.20 6.53 86.50 0.56 2.76 16 13 C 0.04 0.92 4.49 86.53 0.39 1.31 16 14 N -0.52 -14.68 4.76 -875.00 -4.16 -18.85 16 15 C 0.06 2.30 4.03 46.67 0.19 2.48 16 16 C 0.13 6.31 6.81 86.44 0.59 6.90 16 17 N -0.64 -32.55 3.70 -716.68 -2.65 -35.20 16 18 C -0.23 -12.81 10.70 84.03 0.90 -11.91 16 19 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 20 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 21 N -0.96 -58.71 11.39 21.65 0.25 -58.46 16 22 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 26 C 0.13 5.03 8.42 86.48 0.73 5.76 16 27 C 0.05 1.22 5.62 86.40 0.49 1.71 16 28 C 0.12 2.92 6.60 86.36 0.57 3.49 16 29 C -0.11 -1.56 6.03 31.32 0.19 -1.37 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.94 7.85 -2.39 -0.02 0.93 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 1.16 7.30 -2.39 -0.02 1.14 16 36 H 0.07 1.13 7.97 -2.39 -0.02 1.11 16 37 H 0.12 1.35 7.87 -2.39 -0.02 1.33 16 38 H 0.10 1.53 7.67 -2.39 -0.02 1.51 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.11 1.47 6.02 -2.39 -0.01 1.46 16 41 H 0.02 0.70 6.45 -2.39 -0.02 0.68 16 42 H 0.09 2.43 6.06 -2.39 -0.01 2.42 16 43 H 0.10 3.62 8.04 -2.39 -0.02 3.60 16 44 H 0.02 1.11 5.65 -2.39 -0.01 1.10 16 45 H 0.03 1.46 7.16 -2.39 -0.02 1.44 16 46 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 47 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.06 1.96 6.23 -2.39 -0.01 1.94 16 49 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 50 H 0.10 2.36 8.04 -2.39 -0.02 2.34 16 51 H 0.08 2.11 7.06 -2.39 -0.02 2.10 16 52 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 53 H 0.08 0.87 7.84 -2.39 -0.02 0.85 16 54 H 0.06 0.91 7.67 -2.39 -0.02 0.89 16 Total: -1.00 -71.57 402.69 0.62 -70.96 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.86 Total: 17.22 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 6.79 Total: 11.12 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -9.02 Total: -128.87 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.04 Total: -18.39 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -71.57 0.62 -70.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941524278.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.510 kcal (2) G-P(sol) polarization free energy of solvation -71.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds